Protein–RNA interactions for Protein: Q96QK1

VPS35, Vacuolar protein sorting-associated protein 35, humanhuman

Predictions only

Length 796 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35Q96QK1 LINC00368-201ENST00000422994 650 ntTSL 1 (best) BASIC2.36□□□□□ -2.03
VPS35Q96QK1 PTGES3P4-201ENST00000426243 356 ntBASIC2.36□□□□□ -2.03
VPS35Q96QK1 MICF-203ENST00000432679 129 ntBASIC2.36□□□□□ -2.03
VPS35Q96QK1 AC025038.1-201ENST00000433249 336 ntTSL 3 BASIC2.36□□□□□ -2.03
VPS35Q96QK1 COX6CP12-201ENST00000446748 202 ntBASIC2.36□□□□□ -2.03
VPS35Q96QK1 AC092001.1-201ENST00000453012 261 ntBASIC2.36□□□□□ -2.03
VPS35Q96QK1 AC026436.1-201ENST00000510537 270 ntBASIC2.36□□□□□ -2.03
VPS35Q96QK1 AC025524.2-207ENST00000520097 506 ntTSL 3 BASIC2.36□□□□□ -2.03
VPS35Q96QK1 AC108471.2-204ENST00000526807 784 ntTSL 5 BASIC2.36□□□□□ -2.03
VPS35Q96QK1 AC021269.2-201ENST00000532318 330 ntBASIC2.36□□□□□ -2.03
VPS35Q96QK1 AC078880.1-201ENST00000546696 553 ntTSL 4 BASIC2.36□□□□□ -2.03
VPS35Q96QK1 AC011611.4-201ENST00000547721 779 ntTSL 2 BASIC2.36□□□□□ -2.03
VPS35Q96QK1 AL512310.1-201ENST00000548639 172 ntBASIC2.36□□□□□ -2.03
VPS35Q96QK1 LINC01570-201ENST00000561572 434 ntTSL 3 BASIC2.36□□□□□ -2.03
VPS35Q96QK1 AC023824.2-201ENST00000566185 400 ntBASIC2.36□□□□□ -2.03
VPS35Q96QK1 ROCK1P1-201ENST00000573767 549 ntBASIC2.36□□□□□ -2.03
VPS35Q96QK1 AC022893.3-201ENST00000607665 437 ntBASIC2.36□□□□□ -2.03
VPS35Q96QK1 AL355816.2-201ENST00000610049 647 ntBASIC2.36□□□□□ -2.03
VPS35Q96QK1 AC130324.3-201ENST00000614165 542 ntBASIC2.36□□□□□ -2.03
VPS35Q96QK1 LINC01002-202ENST00000631412 459 ntTSL 5 BASIC2.36□□□□□ -2.03
VPS35Q96QK1 MIR7157-201ENST00000635801 60 ntBASIC2.36□□□□□ -2.03
VPS35Q96QK1 AC004944.1-201ENST00000517807 3059 ntBASIC2.36□□□□□ -2.03
VPS35Q96QK1 KCNIP4-207ENST00000509207 1301 ntTSL 1 (best) BASIC2.36□□□□□ -2.03
VPS35Q96QK1 RFESD-202ENST00000380005 2587 ntTSL 2 BASIC2.36□□□□□ -2.03
VPS35Q96QK1 OR13G1-202ENST00000642119 2568 ntAPPRIS P1 BASIC2.36□□□□□ -2.03
VPS35Q96QK1 SNORD114-30-201ENST00000364448 72 ntBASIC2.35□□□□□ -2.03
VPS35Q96QK1 Z98749.2-208ENST00000381646 500 ntBASIC2.35□□□□□ -2.03
VPS35Q96QK1 RNU6-946P-201ENST00000383878 107 ntBASIC2.35□□□□□ -2.03
VPS35Q96QK1 RNU6-19P-201ENST00000384718 107 ntBASIC2.35□□□□□ -2.03
VPS35Q96QK1 MIR218-1-201ENST00000384999 110 ntBASIC2.35□□□□□ -2.03
VPS35Q96QK1 MIR301A-201ENST00000385261 86 ntBASIC2.35□□□□□ -2.03
VPS35Q96QK1 MIR147B-201ENST00000390185 80 ntBASIC2.35□□□□□ -2.03
VPS35Q96QK1 USP9YP6-201ENST00000413550 854 ntBASIC2.35□□□□□ -2.03
VPS35Q96QK1 AC092809.3-201ENST00000415453 231 ntBASIC2.35□□□□□ -2.03
VPS35Q96QK1 MTND1P23-201ENST00000416931 372 ntBASIC2.35□□□□□ -2.03
VPS35Q96QK1 AL445989.1-202ENST00000418943 776 ntTSL 2 BASIC2.35□□□□□ -2.03
VPS35Q96QK1 AL138775.1-201ENST00000429539 575 ntTSL 1 (best) BASIC2.35□□□□□ -2.03
VPS35Q96QK1 AC093899.1-201ENST00000457984 376 ntBASIC2.35□□□□□ -2.03
VPS35Q96QK1 OARD1-209ENST00000471367 401 ntTSL 2 BASIC2.35□□□□□ -2.03
VPS35Q96QK1 AP002075.1-201ENST00000505091 603 ntTSL 3 BASIC2.35□□□□□ -2.03
VPS35Q96QK1 AL359273.1-202ENST00000505585 905 ntTSL 1 (best) BASIC2.35□□□□□ -2.03
VPS35Q96QK1 AC008892.1-201ENST00000511861 384 ntTSL 3 BASIC2.35□□□□□ -2.03
VPS35Q96QK1 RNU6-572P-201ENST00000516724 80 ntBASIC2.35□□□□□ -2.03
VPS35Q96QK1 RNA5SP337-201ENST00000517007 109 ntBASIC2.35□□□□□ -2.03
VPS35Q96QK1 RNU6-1315P-201ENST00000517187 99 ntBASIC2.35□□□□□ -2.03
VPS35Q96QK1 AC107882.1-201ENST00000530837 477 ntTSL 3 BASIC2.35□□□□□ -2.03
VPS35Q96QK1 AC135628.1-201ENST00000568867 534 ntBASIC2.35□□□□□ -2.03
VPS35Q96QK1 MIR4782-201ENST00000577987 79 ntBASIC2.35□□□□□ -2.03
VPS35Q96QK1 MIR5694-201ENST00000581190 76 ntBASIC2.35□□□□□ -2.03
VPS35Q96QK1 AL021997.1-201ENST00000605757 193 ntBASIC2.35□□□□□ -2.03
VPS35Q96QK1 AC010678.1-201ENST00000614118 713 ntBASIC2.35□□□□□ -2.03
VPS35Q96QK1 AC092140.2-201ENST00000618027 521 ntBASIC2.35□□□□□ -2.03
VPS35Q96QK1 AC008781.3-201ENST00000622826 335 ntTSL 2 BASIC2.35□□□□□ -2.03
VPS35Q96QK1 PISRT1-201ENST00000626175 531 ntBASIC2.35□□□□□ -2.03
VPS35Q96QK1 CU459211.1-201ENST00000635667 749 ntBASIC2.35□□□□□ -2.03
VPS35Q96QK1 IGHVIII-44-202ENST00000636235 289 ntBASIC2.35□□□□□ -2.03
VPS35Q96QK1 TBC1D15-210ENST00000485960 2489 ntAPPRIS P1 TSL 1 (best) BASIC2.35□□□□□ -2.03
VPS35Q96QK1 TTK-202ENST00000369798 3010 ntAPPRIS P3 TSL 1 (best) BASIC2.35□□□□□ -2.03
VPS35Q96QK1 CASC1-205ENST00000545133 2146 ntAPPRIS ALT2 TSL 2 BASIC2.35□□□□□ -2.03
VPS35Q96QK1 TSLP-202ENST00000379706 2411 ntTSL 1 (best) BASIC2.34□□□□□ -2.03
VPS35Q96QK1 PARPBP-203ENST00000392911 1916 ntTSL 5 BASIC2.34□□□□□ -2.03
VPS35Q96QK1 MTND5P30-201ENST00000452896 1731 ntBASIC2.34□□□□□ -2.03
VPS35Q96QK1 HSPE1P11-201ENST00000339579 310 ntBASIC2.34□□□□□ -2.03
VPS35Q96QK1 KLRF1-202ENST00000354855 838 ntTSL 1 (best) BASIC2.34□□□□□ -2.03
VPS35Q96QK1 RNU6-960P-201ENST00000364056 120 ntBASIC2.34□□□□□ -2.03
VPS35Q96QK1 U8.8-201ENST00000365399 135 ntBASIC2.34□□□□□ -2.03
VPS35Q96QK1 AL445123.1-201ENST00000422023 446 ntTSL 2 BASIC2.34□□□□□ -2.03
VPS35Q96QK1 MTCO3P30-201ENST00000426425 670 ntBASIC2.34□□□□□ -2.03
VPS35Q96QK1 AL121957.1-201ENST00000441532 338 ntTSL 2 BASIC2.34□□□□□ -2.03
VPS35Q96QK1 EPS15P1-201ENST00000448836 336 ntBASIC2.34□□□□□ -2.03
VPS35Q96QK1 LINC01766-201ENST00000453968 362 ntTSL 3 BASIC2.34□□□□□ -2.03
VPS35Q96QK1 AL139824.2-201ENST00000458731 1095 ntBASIC2.34□□□□□ -2.03
VPS35Q96QK1 AP000797.1-201ENST00000478870 387 ntBASIC2.34□□□□□ -2.03
VPS35Q96QK1 AC005178.1-201ENST00000508392 440 ntBASIC2.34□□□□□ -2.03
VPS35Q96QK1 RNU6-581P-201ENST00000516214 105 ntBASIC2.34□□□□□ -2.03
VPS35Q96QK1 RNU7-51P-201ENST00000516560 62 ntBASIC2.34□□□□□ -2.03
VPS35Q96QK1 RNU6-914P-201ENST00000516749 109 ntBASIC2.34□□□□□ -2.03
VPS35Q96QK1 SCARNA3-201ENST00000517097 143 ntBASIC2.34□□□□□ -2.03
VPS35Q96QK1 AC025755.1-201ENST00000521306 278 ntBASIC2.34□□□□□ -2.03
VPS35Q96QK1 ZNF321P-202ENST00000550843 495 ntBASIC2.34□□□□□ -2.03
VPS35Q96QK1 AC011933.3-201ENST00000578226 372 ntTSL 1 (best) BASIC2.34□□□□□ -2.03
VPS35Q96QK1 MIR4513-201ENST00000581077 86 ntBASIC2.34□□□□□ -2.03
VPS35Q96QK1 MIR5007-201ENST00000583098 95 ntBASIC2.34□□□□□ -2.03
VPS35Q96QK1 AC100778.1-201ENST00000583579 332 ntTSL 3 BASIC2.34□□□□□ -2.03
VPS35Q96QK1 MIR4765-201ENST00000585007 77 ntBASIC2.34□□□□□ -2.03
VPS35Q96QK1 AL353778.1-201ENST00000603149 408 ntBASIC2.34□□□□□ -2.03
VPS35Q96QK1 AL031775.1-201ENST00000607014 887 ntBASIC2.34□□□□□ -2.03
VPS35Q96QK1 uc_338.14-201ENST00000613162 166 ntBASIC2.34□□□□□ -2.03
VPS35Q96QK1 CDK1-202ENST00000373809 1613 ntTSL 1 (best) BASIC2.34□□□□□ -2.04
VPS35Q96QK1 LINC01592-202ENST00000518540 2367 ntTSL 2 BASIC2.34□□□□□ -2.04
VPS35Q96QK1 SENP7-206ENST00000394094 4703 ntAPPRIS ALT2 TSL 1 (best) BASIC2.33□□□□□ -2.04
VPS35Q96QK1 CDC27P3-201ENST00000635418 1910 ntBASIC2.33□□□□□ -2.04
VPS35Q96QK1 CCDC30-201ENST00000340612 2664 ntAPPRIS P2 TSL 5 BASIC2.33□□□□□ -2.04
VPS35Q96QK1 IL33-202ENST00000417746 2327 ntTSL 2 BASIC2.33□□□□□ -2.04
VPS35Q96QK1 C6orf62-201ENST00000378102 741 ntTSL 5 BASIC2.33□□□□□ -2.04
VPS35Q96QK1 XGY1-201ENST00000381172 446 ntBASIC2.33□□□□□ -2.04
VPS35Q96QK1 U3.37-201ENST00000408528 213 ntBASIC2.33□□□□□ -2.04
VPS35Q96QK1 USP9YP27-201ENST00000418455 438 ntBASIC2.33□□□□□ -2.04
VPS35Q96QK1 MORF4L1P6-201ENST00000418771 268 ntBASIC2.33□□□□□ -2.04
VPS35Q96QK1 AL109913.1-201ENST00000421173 514 ntBASIC2.33□□□□□ -2.04
Retrieved 100 of 98,524 protein–RNA pairs in 94.9 ms