Protein–RNA interactions for Protein: Q8IX90

SKA3, Spindle and kinetochore-associated protein 3, humanhuman

Predictions only

Length 412 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SKA3Q8IX90 AF241725.1-201ENST00000416182 480 ntTSL 3 BASIC2.23□□□□□ -2.05
SKA3Q8IX90 AC090960.1-201ENST00000421072 306 ntBASIC2.23□□□□□ -2.05
SKA3Q8IX90 AC016710.1-201ENST00000421326 466 ntTSL 3 BASIC2.23□□□□□ -2.05
SKA3Q8IX90 AC005062.1-206ENST00000424516 710 ntTSL 3 BASIC2.23□□□□□ -2.05
SKA3Q8IX90 AC098614.2-201ENST00000426040 255 ntBASIC2.23□□□□□ -2.05
SKA3Q8IX90 AL512656.1-201ENST00000427492 401 ntTSL 2 BASIC2.23□□□□□ -2.05
SKA3Q8IX90 HMGB1P9-201ENST00000429856 646 ntBASIC2.23□□□□□ -2.05
SKA3Q8IX90 RPS12P2-201ENST00000439728 269 ntBASIC2.23□□□□□ -2.05
SKA3Q8IX90 LINC01758-201ENST00000448001 458 ntTSL 3 BASIC2.23□□□□□ -2.05
SKA3Q8IX90 SRI-210ENST00000490437 570 ntTSL 2 BASIC2.23□□□□□ -2.05
SKA3Q8IX90 RPL39P36-201ENST00000490784 156 ntBASIC2.23□□□□□ -2.05
SKA3Q8IX90 AC139453.3-201ENST00000493276 369 ntBASIC2.23□□□□□ -2.05
SKA3Q8IX90 AC020703.1-201ENST00000505051 521 ntTSL 3 BASIC2.23□□□□□ -2.05
SKA3Q8IX90 HMGB3P3-201ENST00000510526 400 ntBASIC2.23□□□□□ -2.05
SKA3Q8IX90 AC074131.1-201ENST00000514662 253 ntTSL 2 BASIC2.23□□□□□ -2.05
SKA3Q8IX90 RNU1-103P-201ENST00000516502 125 ntBASIC2.23□□□□□ -2.05
SKA3Q8IX90 IGLV3-17-201ENST00000519099 244 ntBASIC2.23□□□□□ -2.05
SKA3Q8IX90 AP002453.2-201ENST00000533503 320 ntBASIC2.23□□□□□ -2.05
SKA3Q8IX90 OR5V1-216ENST00000543825 1048 ntAPPRIS P1 BASIC2.23□□□□□ -2.05
SKA3Q8IX90 AC013417.1-201ENST00000549896 271 ntTSL 5 BASIC2.23□□□□□ -2.05
SKA3Q8IX90 AC025281.1-201ENST00000567026 265 ntBASIC2.23□□□□□ -2.05
SKA3Q8IX90 MIR5092-201ENST00000583139 88 ntBASIC2.23□□□□□ -2.05
SKA3Q8IX90 AC005771.1-201ENST00000585581 349 ntBASIC2.23□□□□□ -2.05
SKA3Q8IX90 TCF4-AS2-201ENST00000586467 445 ntTSL 2 BASIC2.23□□□□□ -2.05
SKA3Q8IX90 AC005498.1-201ENST00000592125 465 ntBASIC2.23□□□□□ -2.05
SKA3Q8IX90 AL355598.1-201ENST00000604169 202 ntBASIC2.23□□□□□ -2.05
SKA3Q8IX90 OR4C16-201ENST00000623907 933 ntAPPRIS P1 BASIC2.23□□□□□ -2.05
SKA3Q8IX90 WARS-244ENST00000627608 123 ntTSL 5 BASIC2.23□□□□□ -2.05
SKA3Q8IX90 AC110994.2-201ENST00000635481 492 ntBASIC2.23□□□□□ -2.05
SKA3Q8IX90 AL512643.1-201ENST00000635735 524 ntBASIC2.23□□□□□ -2.05
SKA3Q8IX90 AASDH-207ENST00000513376 3241 ntTSL 1 (best) BASIC2.23□□□□□ -2.05
SKA3Q8IX90 ENAM-201ENST00000396073 5679 ntAPPRIS P1 TSL 1 (best) BASIC2.23□□□□□ -2.05
SKA3Q8IX90 AL137003.2-201ENST00000606924 2538 ntBASIC2.23□□□□□ -2.05
SKA3Q8IX90 PLCZ1-209ENST00000539875 1398 ntTSL 1 (best) BASIC2.23□□□□□ -2.05
SKA3Q8IX90 DNAH14-210ENST00000439375 13548 ntAPPRIS P1 TSL 5 BASIC2.22□□□□□ -2.05
SKA3Q8IX90 AC073343.1-201ENST00000328239 651 ntBASIC2.22□□□□□ -2.05
SKA3Q8IX90 SNORA20.2-201ENST00000383922 131 ntBASIC2.22□□□□□ -2.05
SKA3Q8IX90 RNU6-641P-201ENST00000384006 107 ntBASIC2.22□□□□□ -2.05
SKA3Q8IX90 RNU6-297P-201ENST00000384636 107 ntBASIC2.22□□□□□ -2.05
SKA3Q8IX90 RNU6-195P-201ENST00000411352 109 ntBASIC2.22□□□□□ -2.05
SKA3Q8IX90 AC127391.1-201ENST00000411737 98 ntBASIC2.22□□□□□ -2.05
SKA3Q8IX90 AC023141.4-201ENST00000412031 328 ntBASIC2.22□□□□□ -2.05
SKA3Q8IX90 NDUFS5P4-201ENST00000412983 318 ntBASIC2.22□□□□□ -2.05
SKA3Q8IX90 AL353729.1-201ENST00000425044 720 ntBASIC2.22□□□□□ -2.05
SKA3Q8IX90 AC020571.1-201ENST00000430904 768 ntTSL 2 BASIC2.22□□□□□ -2.05
SKA3Q8IX90 AL135908.1-201ENST00000431394 446 ntTSL 3 BASIC2.22□□□□□ -2.05
SKA3Q8IX90 MTND2P4-201ENST00000445034 1004 ntBASIC2.22□□□□□ -2.05
SKA3Q8IX90 RPS15AP27-201ENST00000449183 343 ntBASIC2.22□□□□□ -2.05
SKA3Q8IX90 FABP5P13-201ENST00000452144 328 ntBASIC2.22□□□□□ -2.05
SKA3Q8IX90 AL033528.1-201ENST00000453780 140 ntBASIC2.22□□□□□ -2.05
SKA3Q8IX90 AC093899.1-201ENST00000457984 376 ntBASIC2.22□□□□□ -2.05
SKA3Q8IX90 RNA5SP269-201ENST00000459032 137 ntBASIC2.22□□□□□ -2.05
SKA3Q8IX90 snoU109.1-201ENST00000459339 135 ntBASIC2.22□□□□□ -2.05
SKA3Q8IX90 ZBTB20-AS2-201ENST00000478301 372 ntTSL 2 BASIC2.22□□□□□ -2.05
SKA3Q8IX90 AC007182.2-201ENST00000489251 402 ntBASIC2.22□□□□□ -2.05
SKA3Q8IX90 AC121154.1-201ENST00000507299 430 ntTSL 3 BASIC2.22□□□□□ -2.05
SKA3Q8IX90 RPS3A-208ENST00000509736 576 ntTSL 2 BASIC2.22□□□□□ -2.05
SKA3Q8IX90 AC096736.1-201ENST00000512609 947 ntTSL 3 BASIC2.22□□□□□ -2.05
SKA3Q8IX90 AC063919.1-201ENST00000514281 254 ntTSL 3 BASIC2.22□□□□□ -2.05
SKA3Q8IX90 RNU6ATAC13P-201ENST00000516152 131 ntBASIC2.22□□□□□ -2.05
SKA3Q8IX90 Y_RNA.695-201ENST00000516715 107 ntBASIC2.22□□□□□ -2.05
SKA3Q8IX90 AC083973.1-205ENST00000518994 601 ntTSL 2 BASIC2.22□□□□□ -2.05
SKA3Q8IX90 TRIQK-207ENST00000519069 598 ntTSL 4 BASIC2.22□□□□□ -2.05
SKA3Q8IX90 AP003122.3-201ENST00000526316 255 ntBASIC2.22□□□□□ -2.05
SKA3Q8IX90 AC084851.1-201ENST00000529105 249 ntBASIC2.22□□□□□ -2.05
SKA3Q8IX90 AC020661.3-201ENST00000558101 414 ntTSL 3 BASIC2.22□□□□□ -2.05
SKA3Q8IX90 MIR5694-201ENST00000581190 76 ntBASIC2.22□□□□□ -2.05
SKA3Q8IX90 AC073544.2-201ENST00000601155 540 ntBASIC2.22□□□□□ -2.05
SKA3Q8IX90 BNIP3P9-201ENST00000603714 553 ntBASIC2.22□□□□□ -2.05
SKA3Q8IX90 SEPT7P9-203ENST00000604116 343 ntBASIC2.22□□□□□ -2.05
SKA3Q8IX90 CERS6-AS1-209ENST00000609766 642 ntTSL 5 BASIC2.22□□□□□ -2.05
SKA3Q8IX90 AC013562.2-201ENST00000611632 603 ntBASIC2.22□□□□□ -2.05
SKA3Q8IX90 AL133173.2-201ENST00000614270 90 ntBASIC2.22□□□□□ -2.05
SKA3Q8IX90 AP001506.1-201ENST00000615444 211 ntBASIC2.22□□□□□ -2.05
SKA3Q8IX90 OR4C15-202ENST00000642128 951 ntAPPRIS P1 BASIC2.22□□□□□ -2.05
SKA3Q8IX90 PLS1-201ENST00000337777 3755 ntAPPRIS P1 TSL 1 (best) BASIC2.22□□□□□ -2.05
SKA3Q8IX90 ELF2P3-201ENST00000445099 1506 ntBASIC2.22□□□□□ -2.05
SKA3Q8IX90 CATSPERB-201ENST00000256343 3623 ntAPPRIS P2 TSL 1 (best) BASIC2.21□□□□□ -2.06
SKA3Q8IX90 CCSAP-202ENST00000366686 4399 ntTSL 2 BASIC2.21□□□□□ -2.06
SKA3Q8IX90 RNU4-91P-201ENST00000364778 135 ntBASIC2.21□□□□□ -2.06
SKA3Q8IX90 MDM4-202ENST00000367180 547 ntTSL 3 BASIC2.21□□□□□ -2.06
SKA3Q8IX90 MIR27B-201ENST00000385129 97 ntBASIC2.21□□□□□ -2.06
SKA3Q8IX90 TRAJ40-201ENST00000390497 61 ntAPPRIS P1 BASIC2.21□□□□□ -2.06
SKA3Q8IX90 TRAJ26-201ENST00000390511 60 ntAPPRIS P1 BASIC2.21□□□□□ -2.06
SKA3Q8IX90 U3.37-201ENST00000408528 213 ntBASIC2.21□□□□□ -2.06
SKA3Q8IX90 AC007064.1-201ENST00000412238 351 ntBASIC2.21□□□□□ -2.06
SKA3Q8IX90 AF274854.1-201ENST00000413236 615 ntBASIC2.21□□□□□ -2.06
SKA3Q8IX90 BPY2DP-201ENST00000422208 265 ntBASIC2.21□□□□□ -2.06
SKA3Q8IX90 AC112518.1-201ENST00000436089 575 ntTSL 4 BASIC2.21□□□□□ -2.06
SKA3Q8IX90 SFTA1P-203ENST00000446372 693 ntTSL 1 (best) BASIC2.21□□□□□ -2.06
SKA3Q8IX90 HTR2A-AS1-202ENST00000452352 384 ntTSL 2 BASIC2.21□□□□□ -2.06
SKA3Q8IX90 SNORD42A-201ENST00000459584 64 ntBASIC2.21□□□□□ -2.06
SKA3Q8IX90 AC128713.1-201ENST00000471495 306 ntBASIC2.21□□□□□ -2.06
SKA3Q8IX90 LNX1-AS1-203ENST00000511989 488 ntTSL 2 BASIC2.21□□□□□ -2.06
SKA3Q8IX90 AC091965.2-201ENST00000512324 613 ntBASIC2.21□□□□□ -2.06
SKA3Q8IX90 AC106744.2-201ENST00000513955 898 ntTSL 5 BASIC2.21□□□□□ -2.06
SKA3Q8IX90 Vault.3-201ENST00000516676 95 ntBASIC2.21□□□□□ -2.06
SKA3Q8IX90 SNORA18.6-201ENST00000516792 115 ntBASIC2.21□□□□□ -2.06
SKA3Q8IX90 RNU6-143P-201ENST00000516942 93 ntBASIC2.21□□□□□ -2.06
SKA3Q8IX90 AC103993.1-201ENST00000521500 1584 ntTSL 5 BASIC2.21□□□□□ -2.06
Retrieved 100 of 98,524 protein–RNA pairs in 186.7 ms