Protein–RNA interactions for Protein: Q3LFD5

USP41, Putative ubiquitin carboxyl-terminal hydrolase 41, humanhuman

Predictions only

Length 358 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP41Q3LFD5 AL445259.1-201ENST00000587106 2984 ntTSL 5 BASIC3.15□□□□□ -1.9
USP41Q3LFD5 AF165147.1-201ENST00000433310 6103 ntTSL 2 BASIC3.15□□□□□ -1.9
USP41Q3LFD5 TRDN-201ENST00000334268 4770 ntAPPRIS P3 TSL 1 (best) BASIC3.15□□□□□ -1.91
USP41Q3LFD5 RNU6-1287P-201ENST00000362914 107 ntBASIC3.15□□□□□ -1.91
USP41Q3LFD5 RNU4-12P-201ENST00000365233 139 ntBASIC3.15□□□□□ -1.91
USP41Q3LFD5 RNU6-1029P-201ENST00000384109 107 ntBASIC3.15□□□□□ -1.91
USP41Q3LFD5 RNU6-140P-201ENST00000384566 108 ntBASIC3.15□□□□□ -1.91
USP41Q3LFD5 RNU6-1060P-201ENST00000384664 107 ntBASIC3.15□□□□□ -1.91
USP41Q3LFD5 RNU6-1158P-201ENST00000391167 107 ntBASIC3.15□□□□□ -1.91
USP41Q3LFD5 CISD1P1-201ENST00000393907 327 ntBASIC3.15□□□□□ -1.91
USP41Q3LFD5 RNU6ATAC16P-201ENST00000408591 138 ntBASIC3.15□□□□□ -1.91
USP41Q3LFD5 RNA5SP111-201ENST00000411386 101 ntBASIC3.15□□□□□ -1.91
USP41Q3LFD5 AL645937.1-202ENST00000421799 937 ntBASIC3.15□□□□□ -1.91
USP41Q3LFD5 AL355674.1-201ENST00000423681 648 ntTSL 1 (best) BASIC3.15□□□□□ -1.91
USP41Q3LFD5 ZNF863P-201ENST00000426746 417 ntBASIC3.15□□□□□ -1.91
USP41Q3LFD5 AC105272.1-201ENST00000438604 198 ntBASIC3.15□□□□□ -1.91
USP41Q3LFD5 RPS24P13-201ENST00000442520 397 ntBASIC3.15□□□□□ -1.91
USP41Q3LFD5 AC007879.3-202ENST00000448786 823 ntTSL 1 (best) BASIC3.15□□□□□ -1.91
USP41Q3LFD5 AC234781.5-202ENST00000453508 426 ntTSL 3 BASIC3.15□□□□□ -1.91
USP41Q3LFD5 LINC01038-201ENST00000457858 428 ntTSL 3 BASIC3.15□□□□□ -1.91
USP41Q3LFD5 RN7SL20P-201ENST00000488827 297 ntBASIC3.15□□□□□ -1.91
USP41Q3LFD5 LINC02101-201ENST00000505861 725 ntTSL 4 BASIC3.15□□□□□ -1.91
USP41Q3LFD5 AC113385.1-201ENST00000511468 563 ntTSL 4 BASIC3.15□□□□□ -1.91
USP41Q3LFD5 SNORA31.1-201ENST00000515993 133 ntBASIC3.15□□□□□ -1.91
USP41Q3LFD5 SNORA31.5-201ENST00000516190 133 ntBASIC3.15□□□□□ -1.91
USP41Q3LFD5 Y_RNA.693-201ENST00000516641 110 ntBASIC3.15□□□□□ -1.91
USP41Q3LFD5 HDAC2-AS2-206ENST00000517965 850 ntTSL 3 BASIC3.15□□□□□ -1.91
USP41Q3LFD5 SPINK7-205ENST00000523535 299 ntTSL 2 BASIC3.15□□□□□ -1.91
USP41Q3LFD5 AC104383.1-201ENST00000530297 370 ntBASIC3.15□□□□□ -1.91
USP41Q3LFD5 AK6P1-201ENST00000540219 478 ntBASIC3.15□□□□□ -1.91
USP41Q3LFD5 AC023796.2-201ENST00000545410 451 ntTSL 3 BASIC3.15□□□□□ -1.91
USP41Q3LFD5 AC091534.1-202ENST00000549953 468 ntTSL 5 BASIC3.15□□□□□ -1.91
USP41Q3LFD5 HMGB1P33-201ENST00000563485 527 ntBASIC3.15□□□□□ -1.91
USP41Q3LFD5 MIR3609-201ENST00000582661 80 ntBASIC3.15□□□□□ -1.91
USP41Q3LFD5 MIR4672-201ENST00000583126 81 ntBASIC3.15□□□□□ -1.91
USP41Q3LFD5 MIR4298-201ENST00000584380 73 ntBASIC3.15□□□□□ -1.91
USP41Q3LFD5 AC016866.2-201ENST00000585251 502 ntTSL 2 BASIC3.15□□□□□ -1.91
USP41Q3LFD5 AC008521.1-201ENST00000587471 187 ntBASIC3.15□□□□□ -1.91
USP41Q3LFD5 ZNF788-206ENST00000596883 692 ntTSL 3 BASIC3.15□□□□□ -1.91
USP41Q3LFD5 AC007621.1-201ENST00000604544 437 ntBASIC3.15□□□□□ -1.91
USP41Q3LFD5 HSPE1P7-201ENST00000604681 321 ntBASIC3.15□□□□□ -1.91
USP41Q3LFD5 U4.5-201ENST00000617137 123 ntBASIC3.15□□□□□ -1.91
USP41Q3LFD5 AL354950.2-201ENST00000617939 290 ntBASIC3.15□□□□□ -1.91
USP41Q3LFD5 SMAD5-AS1_1.1-201ENST00000619886 266 ntBASIC3.15□□□□□ -1.91
USP41Q3LFD5 AC007318.2-201ENST00000620999 243 ntBASIC3.15□□□□□ -1.91
USP41Q3LFD5 AC011155.2-201ENST00000623202 216 ntBASIC3.15□□□□□ -1.91
USP41Q3LFD5 LINC01002-215ENST00000632203 314 ntTSL 5 BASIC3.15□□□□□ -1.91
USP41Q3LFD5 AL512643.1-201ENST00000635735 524 ntBASIC3.15□□□□□ -1.91
USP41Q3LFD5 Z99571.1-201ENST00000636677 394 ntBASIC3.15□□□□□ -1.91
USP41Q3LFD5 AL365440.2-201ENST00000419738 2597 ntTSL 2 BASIC3.15□□□□□ -1.91
USP41Q3LFD5 AC096644.4-201ENST00000563417 2912 ntBASIC3.15□□□□□ -1.91
USP41Q3LFD5 NXPE1-204ENST00000536271 2289 ntTSL 1 (best) BASIC3.14□□□□□ -1.91
USP41Q3LFD5 RNU6-1322P-201ENST00000364309 107 ntBASIC3.14□□□□□ -1.91
USP41Q3LFD5 Y_RNA.481-201ENST00000384373 102 ntBASIC3.14□□□□□ -1.91
USP41Q3LFD5 MDM2-208ENST00000393410 732 ntTSL 1 (best) BASIC3.14□□□□□ -1.91
USP41Q3LFD5 RNA5SP38-201ENST00000410750 119 ntBASIC3.14□□□□□ -1.91
USP41Q3LFD5 RNU6-387P-201ENST00000411331 105 ntBASIC3.14□□□□□ -1.91
USP41Q3LFD5 USP9YP6-201ENST00000413550 854 ntBASIC3.14□□□□□ -1.91
USP41Q3LFD5 AL109914.1-201ENST00000414740 146 ntTSL 5 BASIC3.14□□□□□ -1.91
USP41Q3LFD5 AC133106.1-201ENST00000419029 397 ntTSL 3 BASIC3.14□□□□□ -1.91
USP41Q3LFD5 RBM6-203ENST00000421682 684 ntTSL 2 BASIC3.14□□□□□ -1.91
USP41Q3LFD5 AC092047.1-201ENST00000424997 240 ntBASIC3.14□□□□□ -1.91
USP41Q3LFD5 ELOCP14-201ENST00000428070 331 ntBASIC3.14□□□□□ -1.91
USP41Q3LFD5 ELOCP7-201ENST00000439968 331 ntBASIC3.14□□□□□ -1.91
USP41Q3LFD5 FDX1P2-201ENST00000450769 375 ntBASIC3.14□□□□□ -1.91
USP41Q3LFD5 UQCRHP3-201ENST00000451503 251 ntBASIC3.14□□□□□ -1.91
USP41Q3LFD5 RPL12P25-201ENST00000455592 494 ntBASIC3.14□□□□□ -1.91
USP41Q3LFD5 AL356010.1-201ENST00000456364 102 ntBASIC3.14□□□□□ -1.91
USP41Q3LFD5 AC091179.1-201ENST00000461606 579 ntBASIC3.14□□□□□ -1.91
USP41Q3LFD5 AC126182.1-201ENST00000478134 357 ntBASIC3.14□□□□□ -1.91
USP41Q3LFD5 LINC02377-201ENST00000500169 450 ntTSL 3 BASIC3.14□□□□□ -1.91
USP41Q3LFD5 HIGD1AP13-201ENST00000509878 289 ntBASIC3.14□□□□□ -1.91
USP41Q3LFD5 RNU6-914P-201ENST00000516749 109 ntBASIC3.14□□□□□ -1.91
USP41Q3LFD5 RNU6-711P-201ENST00000517255 106 ntBASIC3.14□□□□□ -1.91
USP41Q3LFD5 MAPK1-204ENST00000544786 951 ntTSL 1 (best) BASIC3.14□□□□□ -1.91
USP41Q3LFD5 AL355076.2-202ENST00000553754 574 ntTSL 4 BASIC3.14□□□□□ -1.91
USP41Q3LFD5 AC025678.1-201ENST00000567861 338 ntBASIC3.14□□□□□ -1.91
USP41Q3LFD5 MTATP6P3-201ENST00000581686 676 ntBASIC3.14□□□□□ -1.91
USP41Q3LFD5 AC136601.2-201ENST00000604356 474 ntBASIC3.14□□□□□ -1.91
USP41Q3LFD5 AL138880.2-201ENST00000616214 239 ntBASIC3.14□□□□□ -1.91
USP41Q3LFD5 MTND5P7-201ENST00000413558 1798 ntBASIC3.14□□□□□ -1.91
USP41Q3LFD5 AC110774.1-201ENST00000623567 2018 ntBASIC3.14□□□□□ -1.91
USP41Q3LFD5 CRISP3-204ENST00000433368 2205 ntAPPRIS ALT2 TSL 5 BASIC3.13□□□□□ -1.91
USP41Q3LFD5 FGF14-201ENST00000376131 12882 ntTSL 1 (best) BASIC3.13□□□□□ -1.91
USP41Q3LFD5 FTLP6-201ENST00000355274 422 ntBASIC3.13□□□□□ -1.91
USP41Q3LFD5 SNORA9.2-201ENST00000365361 133 ntBASIC3.13□□□□□ -1.91
USP41Q3LFD5 PPP3R1-202ENST00000409377 684 ntTSL 3 BASIC3.13□□□□□ -1.91
USP41Q3LFD5 RNA5SP274-201ENST00000410484 108 ntBASIC3.13□□□□□ -1.91
USP41Q3LFD5 AP000473.1-201ENST00000413645 550 ntTSL 3 BASIC3.13□□□□□ -1.91
USP41Q3LFD5 AL078645.1-201ENST00000414377 423 ntTSL 3 BASIC3.13□□□□□ -1.91
USP41Q3LFD5 AC080125.1-201ENST00000414888 684 ntBASIC3.13□□□□□ -1.91
USP41Q3LFD5 MTCYBP8-201ENST00000422855 651 ntBASIC3.13□□□□□ -1.91
USP41Q3LFD5 RPL7P46-201ENST00000425129 740 ntBASIC3.13□□□□□ -1.91
USP41Q3LFD5 RPL36AP53-201ENST00000432891 316 ntBASIC3.13□□□□□ -1.91
USP41Q3LFD5 AL035258.1-201ENST00000439450 439 ntTSL 3 BASIC3.13□□□□□ -1.91
USP41Q3LFD5 LAMTOR5P1-201ENST00000444290 270 ntBASIC3.13□□□□□ -1.91
USP41Q3LFD5 NRG3-AS1-201ENST00000448936 555 ntTSL 2 BASIC3.13□□□□□ -1.91
USP41Q3LFD5 LINC00571-203ENST00000454060 525 ntTSL 3 BASIC3.13□□□□□ -1.91
USP41Q3LFD5 AC046136.1-201ENST00000459855 533 ntTSL 3 BASIC3.13□□□□□ -1.91
USP41Q3LFD5 AC233702.1-201ENST00000482905 502 ntBASIC3.13□□□□□ -1.91
Retrieved 100 of 98,524 protein–RNA pairs in 97.4 ms