Protein–RNA interactions for Protein: Q02388

COL7A1, Collagen alpha-1(VII) chain, humanhuman

Predictions only

Length 2,944 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1Q02388 AC008834.1-201ENST00000511612 175 ntBASIC0.34□□□□□ -2.35
COL7A1Q02388 LINC02165-201ENST00000563061 443 ntTSL 3 BASIC0.34□□□□□ -2.35
COL7A1Q02388 AC104819.3-201ENST00000603264 540 ntTSL 4 BASIC0.34□□□□□ -2.35
COL7A1Q02388 C7orf66-201ENST00000624695 435 ntTSL 2 BASIC0.34□□□□□ -2.35
COL7A1Q02388 Y_RNA.62-201ENST00000362840 99 ntBASIC0.34□□□□□ -2.36
COL7A1Q02388 SNORA36.1-201ENST00000363424 132 ntBASIC0.34□□□□□ -2.36
COL7A1Q02388 RNU6ATAC2P-201ENST00000387943 126 ntBASIC0.34□□□□□ -2.36
COL7A1Q02388 TRAJ59-201ENST00000390480 54 ntAPPRIS P1 BASIC0.34□□□□□ -2.36
COL7A1Q02388 MRPL35P3-201ENST00000421557 364 ntBASIC0.34□□□□□ -2.36
COL7A1Q02388 AC107081.2-201ENST00000425779 802 ntTSL 5 BASIC0.34□□□□□ -2.36
COL7A1Q02388 OR51AB1P-201ENST00000429046 620 ntBASIC0.34□□□□□ -2.36
COL7A1Q02388 AC245047.4-201ENST00000433189 144 ntBASIC0.34□□□□□ -2.36
COL7A1Q02388 RSL24D1P8-201ENST00000434442 492 ntBASIC0.34□□□□□ -2.36
COL7A1Q02388 AC004383.1-201ENST00000438135 289 ntBASIC0.34□□□□□ -2.36
COL7A1Q02388 SNRPG-205ENST00000449935 428 ntTSL 1 (best) BASIC0.34□□□□□ -2.36
COL7A1Q02388 AP002371.1-201ENST00000463604 433 ntBASIC0.34□□□□□ -2.36
COL7A1Q02388 AC016065.2-201ENST00000514530 444 ntBASIC0.34□□□□□ -2.36
COL7A1Q02388 AP004371.1-201ENST00000525240 214 ntBASIC0.34□□□□□ -2.36
COL7A1Q02388 AC100768.1-201ENST00000525512 506 ntTSL 3 BASIC0.34□□□□□ -2.36
COL7A1Q02388 AL035425.2-201ENST00000563887 563 ntAPPRIS P1 TSL 4 BASIC0.34□□□□□ -2.36
COL7A1Q02388 AC099850.3-201ENST00000577678 321 ntTSL 3 BASIC0.34□□□□□ -2.36
COL7A1Q02388 MIR548Y-201ENST00000582739 110 ntBASIC0.34□□□□□ -2.36
COL7A1Q02388 AL391834.1-201ENST00000609609 560 ntBASIC0.34□□□□□ -2.36
COL7A1Q02388 AC073569.3-201ENST00000619055 682 ntBASIC0.34□□□□□ -2.36
COL7A1Q02388 LINC01515-217ENST00000620859 694 ntTSL 5 BASIC0.34□□□□□ -2.36
COL7A1Q02388 TBC1D31-206ENST00000518805 2201 ntTSL 2 BASIC0.34□□□□□ -2.36
COL7A1Q02388 AL159152.1-201ENST00000635019 2587 ntBASIC0.34□□□□□ -2.36
COL7A1Q02388 MRPL35P1-201ENST00000404272 572 ntBASIC0.34□□□□□ -2.36
COL7A1Q02388 MTND4LP21-201ENST00000415303 295 ntBASIC0.34□□□□□ -2.36
COL7A1Q02388 AC114737.2-201ENST00000421583 173 ntBASIC0.34□□□□□ -2.36
COL7A1Q02388 AC079448.1-201ENST00000449377 373 ntBASIC0.34□□□□□ -2.36
COL7A1Q02388 EIF4EP3-201ENST00000498782 656 ntBASIC0.34□□□□□ -2.36
COL7A1Q02388 AC012312.1-201ENST00000503710 527 ntTSL 2 BASIC0.34□□□□□ -2.36
COL7A1Q02388 SNORA14.1-201ENST00000516113 141 ntBASIC0.34□□□□□ -2.36
COL7A1Q02388 RNU4-77P-201ENST00000516692 156 ntBASIC0.34□□□□□ -2.36
COL7A1Q02388 AC092470.1-201ENST00000546187 132 ntBASIC0.34□□□□□ -2.36
COL7A1Q02388 AL035071.2-201ENST00000565572 459 ntTSL 3 BASIC0.34□□□□□ -2.36
COL7A1Q02388 FAM60CP-201ENST00000591086 664 ntBASIC0.34□□□□□ -2.36
COL7A1Q02388 AP000811.1-201ENST00000603803 651 ntBASIC0.34□□□□□ -2.36
COL7A1Q02388 AC069304.3-201ENST00000603938 1084 ntBASIC0.34□□□□□ -2.36
COL7A1Q02388 HSPE1P7-201ENST00000604681 321 ntBASIC0.34□□□□□ -2.36
COL7A1Q02388 AC159540.2-206ENST00000619371 355 ntTSL 3 BASIC0.34□□□□□ -2.36
COL7A1Q02388 ZBTB41-201ENST00000367405 8478 ntAPPRIS P1 TSL 1 (best) BASIC0.33□□□□□ -2.36
COL7A1Q02388 RNU6-989P-201ENST00000362756 107 ntBASIC0.33□□□□□ -2.36
COL7A1Q02388 MIR601-201ENST00000385256 79 ntBASIC0.33□□□□□ -2.36
COL7A1Q02388 AL356421.1-201ENST00000403255 413 ntBASIC0.33□□□□□ -2.36
COL7A1Q02388 HNRNPDP2-201ENST00000406475 478 ntBASIC0.33□□□□□ -2.36
COL7A1Q02388 EFCAB14-AS1-201ENST00000418985 491 ntTSL 3 BASIC0.33□□□□□ -2.36
COL7A1Q02388 AC064871.1-201ENST00000444562 427 ntTSL 3 BASIC0.33□□□□□ -2.36
COL7A1Q02388 AC109992.2-201ENST00000460977 765 ntTSL 3 BASIC0.33□□□□□ -2.36
COL7A1Q02388 CBX3P3-201ENST00000508108 532 ntBASIC0.33□□□□□ -2.36
COL7A1Q02388 RNU6-567P-201ENST00000516746 107 ntBASIC0.33□□□□□ -2.36
COL7A1Q02388 AC007991.3-201ENST00000517623 502 ntTSL 4 BASIC0.33□□□□□ -2.36
COL7A1Q02388 AC025524.1-201ENST00000518489 606 ntTSL 4 BASIC0.33□□□□□ -2.36
COL7A1Q02388 AC090739.1-201ENST00000522190 708 ntTSL 3 BASIC0.33□□□□□ -2.36
COL7A1Q02388 MIR4493-201ENST00000584016 73 ntBASIC0.33□□□□□ -2.36
COL7A1Q02388 AC012254.4-201ENST00000588843 273 ntBASIC0.33□□□□□ -2.36
COL7A1Q02388 PCNAP1-202ENST00000595299 752 ntBASIC0.33□□□□□ -2.36
COL7A1Q02388 AC018755.4-201ENST00000619715 454 ntBASIC0.33□□□□□ -2.36
COL7A1Q02388 AC097372.5-201ENST00000623665 376 ntBASIC0.33□□□□□ -2.36
COL7A1Q02388 AP003476.1-201ENST00000623984 516 ntBASIC0.33□□□□□ -2.36
COL7A1Q02388 ZNF883-201ENST00000619044 2051 ntAPPRIS P1 TSL 5 BASIC0.33□□□□□ -2.36
COL7A1Q02388 ZNF29P-201ENST00000225587 168 ntBASIC0.33□□□□□ -2.36
COL7A1Q02388 RNU4-32P-201ENST00000363404 141 ntBASIC0.33□□□□□ -2.36
COL7A1Q02388 SNORD118-201ENST00000363593 134 ntBASIC0.33□□□□□ -2.36
COL7A1Q02388 RNU4-67P-201ENST00000364569 141 ntBASIC0.33□□□□□ -2.36
COL7A1Q02388 RNU6-1197P-201ENST00000391183 107 ntBASIC0.33□□□□□ -2.36
COL7A1Q02388 HMGB1P17-201ENST00000403495 628 ntBASIC0.33□□□□□ -2.36
COL7A1Q02388 AL034374.1-201ENST00000406329 351 ntBASIC0.33□□□□□ -2.36
COL7A1Q02388 DPYD-AS2-201ENST00000422259 788 ntTSL 3 BASIC0.33□□□□□ -2.36
COL7A1Q02388 AC024597.1-201ENST00000442753 706 ntTSL 5 BASIC0.33□□□□□ -2.36
COL7A1Q02388 LINC01758-201ENST00000448001 458 ntTSL 3 BASIC0.33□□□□□ -2.36
COL7A1Q02388 AC016751.2-201ENST00000453206 280 ntTSL 5 BASIC0.33□□□□□ -2.36
COL7A1Q02388 AC004884.2-201ENST00000476569 546 ntTSL 4 BASIC0.33□□□□□ -2.36
COL7A1Q02388 SNORA44.1-201ENST00000517031 108 ntBASIC0.33□□□□□ -2.36
COL7A1Q02388 AC239802.1-201ENST00000531288 406 ntTSL 5 BASIC0.33□□□□□ -2.36
COL7A1Q02388 MIR5571-201ENST00000577998 113 ntBASIC0.33□□□□□ -2.36
COL7A1Q02388 AC006116.4-201ENST00000589671 452 ntTSL 2 BASIC0.33□□□□□ -2.36
COL7A1Q02388 AL391516.1-201ENST00000554380 2449 ntBASIC0.33□□□□□ -2.36
COL7A1Q02388 AC245060.5-201ENST00000610778 3293 ntBASIC0.32□□□□□ -2.36
COL7A1Q02388 LINC01967-201ENST00000356047 755 ntTSL 5 BASIC0.32□□□□□ -2.36
COL7A1Q02388 Y_RNA.65-201ENST00000362846 100 ntBASIC0.32□□□□□ -2.36
COL7A1Q02388 Y_RNA.293-201ENST00000364908 93 ntBASIC0.32□□□□□ -2.36
COL7A1Q02388 RNU6-939P-201ENST00000384634 107 ntBASIC0.32□□□□□ -2.36
COL7A1Q02388 U3.29-201ENST00000391296 212 ntBASIC0.32□□□□□ -2.36
COL7A1Q02388 RPS3AP24-201ENST00000407896 734 ntBASIC0.32□□□□□ -2.36
COL7A1Q02388 AL356320.2-201ENST00000417263 507 ntBASIC0.32□□□□□ -2.36
COL7A1Q02388 AP000550.2-201ENST00000417463 774 ntTSL 5 BASIC0.32□□□□□ -2.36
COL7A1Q02388 AC098614.2-201ENST00000426040 255 ntBASIC0.32□□□□□ -2.36
COL7A1Q02388 LINC01052-201ENST00000437777 496 ntTSL 3 BASIC0.32□□□□□ -2.36
COL7A1Q02388 CHODL-AS1-201ENST00000447175 1117 ntTSL 2 BASIC0.32□□□□□ -2.36
COL7A1Q02388 TSPY5P-202ENST00000456541 142 ntTSL 3 BASIC0.32□□□□□ -2.36
COL7A1Q02388 RNU7-27P-201ENST00000459281 62 ntBASIC0.32□□□□□ -2.36
COL7A1Q02388 RPS27P22-201ENST00000478056 241 ntBASIC0.32□□□□□ -2.36
COL7A1Q02388 AC027031.1-201ENST00000517318 489 ntTSL 3 BASIC0.32□□□□□ -2.36
COL7A1Q02388 LY96-202ENST00000518893 430 ntTSL 3 BASIC0.32□□□□□ -2.36
COL7A1Q02388 AC012613.1-201ENST00000522685 387 ntTSL 2 BASIC0.32□□□□□ -2.36
COL7A1Q02388 AC025857.1-201ENST00000525252 377 ntBASIC0.32□□□□□ -2.36
COL7A1Q02388 AP005639.2-201ENST00000527592 928 ntBASIC0.32□□□□□ -2.36
COL7A1Q02388 AP003717.3-201ENST00000544832 1180 ntBASIC0.32□□□□□ -2.36
Retrieved 100 of 98,524 protein–RNA pairs in 107.8 ms