Protein–RNA interactions for Protein: P27658

COL8A1, Collagen alpha-1(VIII) chain, humanhuman

Predictions only

Length 744 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL8A1P27658 YWHAEP7-201ENST00000617508 639 ntTSL 3 BASIC4.45□□□□□ -1.7
COL8A1P27658 SNHG5-214ENST00000623001 598 ntTSL 2 BASIC4.45□□□□□ -1.7
COL8A1P27658 SPTY2D1-AS1-204ENST00000634992 373 ntAPPRIS P5 TSL 5 BASIC4.45□□□□□ -1.7
COL8A1P27658 MIR6844-201ENST00000637122 62 ntBASIC4.45□□□□□ -1.7
COL8A1P27658 PSG1-201ENST00000244296 2276 ntAPPRIS P3 TSL 1 (best) BASIC4.45□□□□□ -1.7
COL8A1P27658 AC139769.2-201ENST00000599944 2291 ntTSL 2 BASIC4.45□□□□□ -1.7
COL8A1P27658 RIMS1-212ENST00000517827 3065 ntTSL 2 BASIC4.45□□□□□ -1.7
COL8A1P27658 CUL1P1-201ENST00000509510 2425 ntBASIC4.45□□□□□ -1.7
COL8A1P27658 FAM135A-202ENST00000361499 5042 ntAPPRIS ALT1 TSL 1 (best) BASIC4.45□□□□□ -1.7
COL8A1P27658 SLMAP-206ENST00000428312 4132 ntTSL 1 (best) BASIC4.45□□□□□ -1.7
COL8A1P27658 TIPARP-207ENST00000542783 3681 ntAPPRIS P1 TSL 1 (best) BASIC4.45□□□□□ -1.7
COL8A1P27658 GPALPP1-201ENST00000357537 5368 ntTSL 1 (best) BASIC4.45□□□□□ -1.7
COL8A1P27658 VWC2L-202ENST00000427124 4480 ntTSL 1 (best) BASIC4.45□□□□□ -1.7
COL8A1P27658 ORMDL1-201ENST00000325795 2692 ntAPPRIS P1 TSL 1 (best) BASIC4.45□□□□□ -1.7
COL8A1P27658 DYNC1I2-201ENST00000340296 2589 ntAPPRIS P4 TSL 1 (best) BASIC4.45□□□□□ -1.7
COL8A1P27658 LINC00630-205ENST00000440496 2101 ntTSL 1 (best) BASIC4.45□□□□□ -1.7
COL8A1P27658 MAPK10-263ENST00000641052 4307 ntBASIC4.45□□□□□ -1.7
COL8A1P27658 SKP1-209ENST00000522552 1683 ntAPPRIS ALT1 TSL 1 (best) BASIC4.45□□□□□ -1.7
COL8A1P27658 AP001029.2-203ENST00000589795 4910 ntBASIC4.45□□□□□ -1.7
COL8A1P27658 DNAH12-203ENST00000389536 2613 ntTSL 5 BASIC4.44□□□□□ -1.7
COL8A1P27658 TTC3-204ENST00000399017 10363 ntAPPRIS P1 TSL 1 (best) BASIC4.44□□□□□ -1.7
COL8A1P27658 EPHA4-202ENST00000409854 3454 ntTSL 1 (best) BASIC4.44□□□□□ -1.7
COL8A1P27658 CAV1-205ENST00000405348 2443 ntAPPRIS ALT1 TSL 5 BASIC4.44□□□□□ -1.7
COL8A1P27658 SLC16A9-201ENST00000395347 3646 ntAPPRIS P1 TSL 2 BASIC4.44□□□□□ -1.7
COL8A1P27658 IBTK-206ENST00000503631 3560 ntTSL 1 (best) BASIC4.44□□□□□ -1.7
COL8A1P27658 snoU2_19.4-201ENST00000364329 80 ntBASIC4.44□□□□□ -1.7
COL8A1P27658 RNU5E-7P-201ENST00000365290 117 ntBASIC4.44□□□□□ -1.7
COL8A1P27658 RNA5SP187-201ENST00000384400 119 ntBASIC4.44□□□□□ -1.7
COL8A1P27658 RNU6-159P-201ENST00000391080 106 ntBASIC4.44□□□□□ -1.7
COL8A1P27658 Y_RNA.595-201ENST00000410403 105 ntBASIC4.44□□□□□ -1.7
COL8A1P27658 AC009237.10-201ENST00000414112 510 ntBASIC4.44□□□□□ -1.7
COL8A1P27658 MOBP-203ENST00000415443 577 ntAPPRIS ALT2 TSL 4 BASIC4.44□□□□□ -1.7
COL8A1P27658 RNF10P1-201ENST00000418589 369 ntBASIC4.44□□□□□ -1.7
COL8A1P27658 RPL23AP1-201ENST00000428990 471 ntBASIC4.44□□□□□ -1.7
COL8A1P27658 CYCSP32-201ENST00000440548 321 ntBASIC4.44□□□□□ -1.7
COL8A1P27658 AL359073.1-201ENST00000448036 403 ntBASIC4.44□□□□□ -1.7
COL8A1P27658 AC048351.1-202ENST00000449483 735 ntTSL 3 BASIC4.44□□□□□ -1.7
COL8A1P27658 IGKV1-32-201ENST00000519290 311 ntBASIC4.44□□□□□ -1.7
COL8A1P27658 AC084880.2-201ENST00000536009 501 ntTSL 3 BASIC4.44□□□□□ -1.7
COL8A1P27658 SLC48A1-205ENST00000547002 751 ntTSL 3 BASIC4.44□□□□□ -1.7
COL8A1P27658 AC092078.1-201ENST00000558370 325 ntTSL 3 BASIC4.44□□□□□ -1.7
COL8A1P27658 DEFB117-201ENST00000602356 141 ntBASIC4.44□□□□□ -1.7
COL8A1P27658 AL356218.2-201ENST00000605264 187 ntBASIC4.44□□□□□ -1.7
COL8A1P27658 AL773545.4-201ENST00000637262 310 ntBASIC4.44□□□□□ -1.7
COL8A1P27658 AL513478.4-201ENST00000641636 310 ntBASIC4.44□□□□□ -1.7
COL8A1P27658 AC018529.3-201ENST00000624212 2254 ntBASIC4.44□□□□□ -1.7
COL8A1P27658 CEP97-201ENST00000341893 8361 ntAPPRIS P3 TSL 1 (best) BASIC4.44□□□□□ -1.7
COL8A1P27658 DTNA-231ENST00000598774 2418 ntTSL 1 (best) BASIC4.44□□□□□ -1.7
COL8A1P27658 ZBTB38-201ENST00000321464 3588 ntAPPRIS P1 BASIC4.44□□□□□ -1.7
COL8A1P27658 VCAM1-202ENST00000347652 2812 ntTSL 1 (best) BASIC4.44□□□□□ -1.7
COL8A1P27658 IKZF2-201ENST00000342002 3747 ntAPPRIS ALT2 TSL 1 (best) BASIC4.44□□□□□ -1.7
COL8A1P27658 AC010329.2-201ENST00000595195 2737 ntBASIC4.44□□□□□ -1.7
COL8A1P27658 MYB-239ENST00000534121 2238 ntTSL 1 (best) BASIC4.44□□□□□ -1.7
COL8A1P27658 AC019197.1-201ENST00000638199 3611 ntTSL 5 BASIC4.44□□□□□ -1.7
COL8A1P27658 CKAP5-202ENST00000354558 6428 ntTSL 1 (best) BASIC4.44□□□□□ -1.7
COL8A1P27658 ZNF189-201ENST00000259395 3115 ntTSL 1 (best) BASIC4.43□□□□□ -1.7
COL8A1P27658 SLC15A2-201ENST00000295605 2379 ntTSL 2 BASIC4.43□□□□□ -1.7
COL8A1P27658 CPNE4-214ENST00000617767 3556 ntTSL 2 BASIC4.43□□□□□ -1.7
COL8A1P27658 PLEKHG7-201ENST00000344636 3868 ntTSL 5 BASIC4.43□□□□□ -1.7
COL8A1P27658 ACSL5-202ENST00000354655 3351 ntAPPRIS P1 TSL 2 BASIC4.43□□□□□ -1.7
COL8A1P27658 ADAM29-213ENST00000615367 3386 ntAPPRIS P1 TSL 5 BASIC4.43□□□□□ -1.7
COL8A1P27658 ADGRL2-206ENST00000370721 5023 ntTSL 5 BASIC4.43□□□□□ -1.7
COL8A1P27658 MIR450A1-201ENST00000362262 91 ntBASIC4.43□□□□□ -1.7
COL8A1P27658 RNU6-235P-201ENST00000362644 107 ntBASIC4.43□□□□□ -1.7
COL8A1P27658 RNU6-915P-201ENST00000364943 103 ntBASIC4.43□□□□□ -1.7
COL8A1P27658 RNU6-294P-201ENST00000364999 102 ntBASIC4.43□□□□□ -1.7
COL8A1P27658 RNU6-407P-201ENST00000365280 104 ntBASIC4.43□□□□□ -1.7
COL8A1P27658 RNU6-245P-201ENST00000384020 107 ntBASIC4.43□□□□□ -1.7
COL8A1P27658 SNORD116-21-201ENST00000384507 92 ntBASIC4.43□□□□□ -1.7
COL8A1P27658 MIR34A-201ENST00000385130 110 ntBASIC4.43□□□□□ -1.7
COL8A1P27658 CACYBP-203ENST00000406752 243 ntTSL 5 BASIC4.43□□□□□ -1.7
COL8A1P27658 AL513331.1-201ENST00000411908 397 ntBASIC4.43□□□□□ -1.7
COL8A1P27658 AL360169.1-201ENST00000435116 143 ntTSL 5 BASIC4.43□□□□□ -1.7
COL8A1P27658 AC124916.1-201ENST00000444020 547 ntBASIC4.43□□□□□ -1.7
COL8A1P27658 AC109327.1-201ENST00000471666 403 ntBASIC4.43□□□□□ -1.7
COL8A1P27658 ARHGEF3-AS1-202ENST00000495939 336 ntTSL 3 BASIC4.43□□□□□ -1.7
COL8A1P27658 SNORD33.1-201ENST00000516213 88 ntBASIC4.43□□□□□ -1.7
COL8A1P27658 AC018442.3-201ENST00000523025 183 ntBASIC4.43□□□□□ -1.7
COL8A1P27658 LINC01570-201ENST00000561572 434 ntTSL 3 BASIC4.43□□□□□ -1.7
COL8A1P27658 UBL5P4-201ENST00000562584 236 ntBASIC4.43□□□□□ -1.7
COL8A1P27658 RN7SL356P-201ENST00000582228 248 ntBASIC4.43□□□□□ -1.7
COL8A1P27658 AP002826.1-201ENST00000608835 315 ntBASIC4.43□□□□□ -1.7
COL8A1P27658 AL078604.3-201ENST00000615580 211 ntBASIC4.43□□□□□ -1.7
COL8A1P27658 Metazoa_SRP.93-201ENST00000622525 276 ntBASIC4.43□□□□□ -1.7
COL8A1P27658 ZNF248-201ENST00000357328 4795 ntAPPRIS P1 TSL 2 BASIC4.43□□□□□ -1.7
COL8A1P27658 NXT2-201ENST00000218004 2692 ntTSL 1 (best) BASIC4.43□□□□□ -1.7
COL8A1P27658 C3orf58-202ENST00000441925 3260 ntTSL 2 BASIC4.43□□□□□ -1.7
COL8A1P27658 PLCB4-204ENST00000378501 5833 ntAPPRIS P4 TSL 5 BASIC4.43□□□□□ -1.7
COL8A1P27658 MAP2-202ENST00000360351 9711 ntAPPRIS P2 TSL 5 BASIC4.42□□□□□ -1.7
COL8A1P27658 FAR2-203ENST00000547116 1787 ntTSL 2 BASIC4.42□□□□□ -1.7
COL8A1P27658 AKAP6-212ENST00000557272 4601 ntTSL 5 BASIC4.42□□□□□ -1.7
COL8A1P27658 NBPF14-206ENST00000614999 10080 ntTSL 5 BASIC4.42□□□□□ -1.7
COL8A1P27658 TMEM154-201ENST00000304385 10698 ntAPPRIS P2 TSL 1 (best) BASIC4.42□□□□□ -1.7
COL8A1P27658 AL590240.1-201ENST00000334118 313 ntBASIC4.42□□□□□ -1.7
COL8A1P27658 RN7SKP145-201ENST00000363291 303 ntBASIC4.42□□□□□ -1.7
COL8A1P27658 Y_RNA.251-201ENST00000364551 99 ntBASIC4.42□□□□□ -1.7
COL8A1P27658 MIR626-201ENST00000385032 94 ntBASIC4.42□□□□□ -1.7
COL8A1P27658 RNU6-763P-201ENST00000390865 106 ntBASIC4.42□□□□□ -1.7
COL8A1P27658 MTHFD2P2-201ENST00000407725 247 ntBASIC4.42□□□□□ -1.7
COL8A1P27658 AL360175.1-201ENST00000426547 285 ntTSL 5 BASIC4.42□□□□□ -1.7
Retrieved 100 of 98,524 protein–RNA pairs in 101 ms