Protein–RNA interactions for Protein: Q9QXK7

Cpsf3, Cleavage and polyadenylation specificity factor subunit 3, mousemouse

Predictions only

Length 684 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cpsf3Q9QXK7 AK157302-201ENSMUST00000104942 1924 ntAPPRIS P1 BASIC17.41■□□□□ 0.38
Cpsf3Q9QXK7 Celf1-201ENSMUST00000005643 4830 ntAPPRIS P4 TSL 5 BASIC17.41■□□□□ 0.38
Cpsf3Q9QXK7 Fam131b-201ENSMUST00000031891 4065 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
Cpsf3Q9QXK7 Xpr1-202ENSMUST00000111774 2753 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
Cpsf3Q9QXK7 Lrch3-203ENSMUST00000135193 2794 ntAPPRIS ALT2 TSL 5 BASIC17.4■□□□□ 0.38
Cpsf3Q9QXK7 Uri1-201ENSMUST00000085513 3441 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
Cpsf3Q9QXK7 Zfp142-201ENSMUST00000027315 6480 ntAPPRIS ALT2 TSL 1 (best) BASIC17.4■□□□□ 0.38
Cpsf3Q9QXK7 Mybl2-201ENSMUST00000018005 3651 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
Cpsf3Q9QXK7 Pcmt1-202ENSMUST00000159917 2491 ntAPPRIS P3 TSL 1 (best) BASIC17.4■□□□□ 0.38
Cpsf3Q9QXK7 Mcoln2-202ENSMUST00000098524 2492 ntAPPRIS ALT2 TSL 1 (best) BASIC17.4■□□□□ 0.38
Cpsf3Q9QXK7 Lonrf1-201ENSMUST00000065297 3930 ntAPPRIS P1 TSL 5 BASIC17.4■□□□□ 0.38
Cpsf3Q9QXK7 H2-Q6-201ENSMUST00000113879 981 ntAPPRIS P1 TSL 2 BASIC17.4■□□□□ 0.38
Cpsf3Q9QXK7 Gm13054-201ENSMUST00000154192 820 ntTSL 3 BASIC17.4■□□□□ 0.38
Cpsf3Q9QXK7 Sec61g-206ENSMUST00000166950 754 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
Cpsf3Q9QXK7 Sec61g-207ENSMUST00000178855 779 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
Cpsf3Q9QXK7 Gm26871-202ENSMUST00000180774 695 ntTSL 2 BASIC17.4■□□□□ 0.38
Cpsf3Q9QXK7 Tmem178b-203ENSMUST00000180886 712 ntTSL 5 BASIC17.4■□□□□ 0.38
Cpsf3Q9QXK7 Gm7507-201ENSMUST00000183053 1008 ntBASIC17.4■□□□□ 0.38
Cpsf3Q9QXK7 Gm34391-201ENSMUST00000203706 907 ntBASIC17.4■□□□□ 0.38
Cpsf3Q9QXK7 Gm45890-204ENSMUST00000212356 545 ntTSL 2 BASIC17.4■□□□□ 0.38
Cpsf3Q9QXK7 AC159641.1-201ENSMUST00000221117 177 ntTSL 3 BASIC17.4■□□□□ 0.38
Cpsf3Q9QXK7 Nudt14-203ENSMUST00000221497 355 ntTSL 2 BASIC17.4■□□□□ 0.38
Cpsf3Q9QXK7 Gm9857-201ENSMUST00000050914 393 ntAPPRIS P1 BASIC17.4■□□□□ 0.38
Cpsf3Q9QXK7 Dnajb8-201ENSMUST00000061866 990 ntAPPRIS P1 BASIC17.4■□□□□ 0.38
Cpsf3Q9QXK7 Lhfp-203ENSMUST00000147139 1932 ntAPPRIS P1 TSL 5 BASIC17.4■□□□□ 0.38
Cpsf3Q9QXK7 Plpp7-201ENSMUST00000057423 1947 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
Cpsf3Q9QXK7 Bicdl1-201ENSMUST00000055408 3026 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
Cpsf3Q9QXK7 Rfx7-202ENSMUST00000163401 7880 ntAPPRIS P1 TSL 2 BASIC17.4■□□□□ 0.38
Cpsf3Q9QXK7 Dag1-201ENSMUST00000080435 4364 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
Cpsf3Q9QXK7 Hnrnpa1-202ENSMUST00000087351 1759 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
Cpsf3Q9QXK7 Il7-203ENSMUST00000192202 2057 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
Cpsf3Q9QXK7 Tmem229a-201ENSMUST00000127247 5157 ntAPPRIS P1 BASIC17.39■□□□□ 0.38
Cpsf3Q9QXK7 Mycs-201ENSMUST00000058404 2368 ntAPPRIS P1 BASIC17.39■□□□□ 0.38
Cpsf3Q9QXK7 Sirt6-202ENSMUST00000119324 1667 ntAPPRIS ALT2 TSL 1 (best) BASIC17.39■□□□□ 0.37
Cpsf3Q9QXK7 Pou3f2-201ENSMUST00000178174 5587 ntAPPRIS P1 BASIC17.39■□□□□ 0.37
Cpsf3Q9QXK7 Agrn-206ENSMUST00000180572 6891 ntAPPRIS P1 TSL 5 BASIC17.39■□□□□ 0.37
Cpsf3Q9QXK7 Sbk2-202ENSMUST00000182214 2236 ntAPPRIS P1 TSL 5 BASIC17.39■□□□□ 0.37
Cpsf3Q9QXK7 Zbtb48-201ENSMUST00000066715 2218 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
Cpsf3Q9QXK7 Ccl27a-202ENSMUST00000108032 350 ntTSL 1 (best) BASIC17.39■□□□□ 0.37
Cpsf3Q9QXK7 Tfpt-202ENSMUST00000108641 1166 ntAPPRIS ALT2 TSL 1 (best) BASIC17.39■□□□□ 0.37
Cpsf3Q9QXK7 Zfp133-ps-202ENSMUST00000124788 1079 ntTSL 1 (best) BASIC17.39■□□□□ 0.37
Cpsf3Q9QXK7 Smim12-201ENSMUST00000142029 1022 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
Cpsf3Q9QXK7 Ankrd23-204ENSMUST00000194853 1073 ntTSL 1 (best) BASIC17.39■□□□□ 0.37
Cpsf3Q9QXK7 Hs3st2-202ENSMUST00000206880 1149 ntTSL 1 (best) BASIC17.39■□□□□ 0.37
Cpsf3Q9QXK7 Umpk-ps-201ENSMUST00000211897 827 ntBASIC17.39■□□□□ 0.37
Cpsf3Q9QXK7 Olfr571-201ENSMUST00000061738 969 ntAPPRIS P1 BASIC17.39■□□□□ 0.37
Cpsf3Q9QXK7 Cnppd1-208ENSMUST00000190679 2062 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
Cpsf3Q9QXK7 Camk2n1-201ENSMUST00000050918 4444 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
Cpsf3Q9QXK7 Casq1-201ENSMUST00000003554 1847 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
Cpsf3Q9QXK7 Emd-201ENSMUST00000002029 1595 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
Cpsf3Q9QXK7 Adprh-201ENSMUST00000002923 1583 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
Cpsf3Q9QXK7 Rara-202ENSMUST00000107473 3238 ntTSL 1 (best) BASIC17.39■□□□□ 0.37
Cpsf3Q9QXK7 Antxr2-201ENSMUST00000031281 5656 ntAPPRIS P2 TSL 1 (best) BASIC17.39■□□□□ 0.37
Cpsf3Q9QXK7 Mtx2-201ENSMUST00000028511 2950 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
Cpsf3Q9QXK7 Slc25a2-201ENSMUST00000058635 1369 ntAPPRIS P1 BASIC17.39■□□□□ 0.37
Cpsf3Q9QXK7 Adnp2-201ENSMUST00000066743 5012 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
Cpsf3Q9QXK7 Lrch4-201ENSMUST00000031734 3078 ntAPPRIS P3 TSL 1 (best) BASIC17.39■□□□□ 0.37
Cpsf3Q9QXK7 Kifc3-203ENSMUST00000169748 3384 ntAPPRIS ALT2 TSL 1 (best) BASIC17.39■□□□□ 0.37
Cpsf3Q9QXK7 Fam178b-202ENSMUST00000170295 2286 ntAPPRIS ALT2 TSL 5 BASIC17.38■□□□□ 0.37
Cpsf3Q9QXK7 Snx16-201ENSMUST00000029047 2288 ntAPPRIS P3 TSL 1 (best) BASIC17.38■□□□□ 0.37
Cpsf3Q9QXK7 Prrt4-201ENSMUST00000159200 3411 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
Cpsf3Q9QXK7 Shisa7-201ENSMUST00000066041 6006 ntAPPRIS ALT2 TSL 1 (best) BASIC17.38■□□□□ 0.37
Cpsf3Q9QXK7 Gm17200-201ENSMUST00000170214 2022 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
Cpsf3Q9QXK7 Gm40773-201ENSMUST00000218113 1502 ntTSL 5 BASIC17.38■□□□□ 0.37
Cpsf3Q9QXK7 Prmt9-202ENSMUST00000118622 2768 ntAPPRIS ALT2 TSL 5 BASIC17.38■□□□□ 0.37
Cpsf3Q9QXK7 Ormdl3-201ENSMUST00000052919 2184 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
Cpsf3Q9QXK7 Chga-201ENSMUST00000021610 1883 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
Cpsf3Q9QXK7 Zbtb24-201ENSMUST00000080771 2844 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
Cpsf3Q9QXK7 Hist1h1c-201ENSMUST00000040914 1560 ntAPPRIS P1 BASIC17.38■□□□□ 0.37
Cpsf3Q9QXK7 Rhobtb1-202ENSMUST00000067908 4422 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
Cpsf3Q9QXK7 Gm45244-201ENSMUST00000211328 2200 ntBASIC17.38■□□□□ 0.37
Cpsf3Q9QXK7 Gm15165-201ENSMUST00000118140 502 ntBASIC17.38■□□□□ 0.37
Cpsf3Q9QXK7 Gm12963-201ENSMUST00000131846 783 ntTSL 5 BASIC17.38■□□□□ 0.37
Cpsf3Q9QXK7 Chd3os-202ENSMUST00000151617 389 ntTSL 3 BASIC17.38■□□□□ 0.37
Cpsf3Q9QXK7 Gm1818-201ENSMUST00000169406 1184 ntBASIC17.38■□□□□ 0.37
Cpsf3Q9QXK7 AV026068-207ENSMUST00000187718 400 ntTSL 5 BASIC17.38■□□□□ 0.37
Cpsf3Q9QXK7 Icam4-202ENSMUST00000215077 1028 ntAPPRIS ALT2 TSL 1 (best) BASIC17.38■□□□□ 0.37
Cpsf3Q9QXK7 Romo1-201ENSMUST00000088610 569 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
Cpsf3Q9QXK7 Sppl3-201ENSMUST00000031530 3204 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
Cpsf3Q9QXK7 Sigirr-203ENSMUST00000209294 1612 ntAPPRIS P2 TSL 1 (best) BASIC17.38■□□□□ 0.37
Cpsf3Q9QXK7 Cmtm3-201ENSMUST00000034343 1616 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
Cpsf3Q9QXK7 Gdpd5-201ENSMUST00000037528 4611 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
Cpsf3Q9QXK7 Lsm1-201ENSMUST00000038421 2663 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
Cpsf3Q9QXK7 Cwh43-201ENSMUST00000031040 2716 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
Cpsf3Q9QXK7 Txndc11-201ENSMUST00000038424 3095 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
Cpsf3Q9QXK7 Kcnk10-203ENSMUST00000221305 1357 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
Cpsf3Q9QXK7 Tm6sf2-201ENSMUST00000049197 1418 ntAPPRIS P3 TSL 1 (best) BASIC17.38■□□□□ 0.37
Cpsf3Q9QXK7 Rb1-201ENSMUST00000022701 4656 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
Cpsf3Q9QXK7 Mzf1-202ENSMUST00000182087 2197 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
Cpsf3Q9QXK7 Vim-201ENSMUST00000028062 2193 ntAPPRIS P2 TSL 1 (best) BASIC17.38■□□□□ 0.37
Cpsf3Q9QXK7 Trim7-201ENSMUST00000046903 2161 ntAPPRIS P1 TSL 5 BASIC17.38■□□□□ 0.37
Cpsf3Q9QXK7 Cops7b-201ENSMUST00000027446 2231 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
Cpsf3Q9QXK7 D430001F17Rik-201ENSMUST00000141344 1858 ntTSL 5 BASIC17.37■□□□□ 0.37
Cpsf3Q9QXK7 Shc1-202ENSMUST00000094378 2617 ntAPPRIS ALT1 TSL 1 (best) BASIC17.37■□□□□ 0.37
Cpsf3Q9QXK7 Hps6-201ENSMUST00000099393 2696 ntAPPRIS P1 BASIC17.37■□□□□ 0.37
Cpsf3Q9QXK7 Il3ra-203ENSMUST00000224163 2315 ntAPPRIS P2 BASIC17.37■□□□□ 0.37
Cpsf3Q9QXK7 Wdr26-207ENSMUST00000162819 6619 ntAPPRIS P2 TSL 1 (best) BASIC17.37■□□□□ 0.37
Cpsf3Q9QXK7 Simc1-202ENSMUST00000121401 4819 ntAPPRIS P2 TSL 5 BASIC17.37■□□□□ 0.37
Cpsf3Q9QXK7 Cnot9-201ENSMUST00000087215 3268 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
Cpsf3Q9QXK7 Ush1c-208ENSMUST00000177212 1696 ntAPPRIS ALT2 TSL 5 BASIC17.37■□□□□ 0.37
Retrieved 100 of 76,532 protein–RNA pairs in 42.3 ms