Protein–RNA interactions for Protein: Q9D0R4

Ddx56, Probable ATP-dependent RNA helicase DDX56, mousemouse

Known RBP Predictions only

Length 546 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ddx56Q9D0R4 Ep300-201ENSMUST00000068387 9566 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
Ddx56Q9D0R4 Gm13327-201ENSMUST00000133391 2741 ntTSL 5 BASIC17.05■□□□□ 0.32
Ddx56Q9D0R4 Lrfn1-202ENSMUST00000108288 3060 ntAPPRIS ALT2 TSL 1 (best) BASIC17.05■□□□□ 0.32
Ddx56Q9D0R4 Casp8-204ENSMUST00000191201 1849 ntAPPRIS ALT2 TSL 5 BASIC17.05■□□□□ 0.32
Ddx56Q9D0R4 Bend6-204ENSMUST00000129464 1750 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
Ddx56Q9D0R4 B4galt7-201ENSMUST00000064701 2130 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
Ddx56Q9D0R4 Pten-201ENSMUST00000013807 8292 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
Ddx56Q9D0R4 Gm14634-201ENSMUST00000139163 1662 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
Ddx56Q9D0R4 Tyk2-205ENSMUST00000214864 1662 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
Ddx56Q9D0R4 Med7-209ENSMUST00000170928 2390 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
Ddx56Q9D0R4 Gm25016-201ENSMUST00000158399 131 ntBASIC17.05■□□□□ 0.32
Ddx56Q9D0R4 Apopt1-204ENSMUST00000163220 671 ntAPPRIS ALT2 TSL 2 BASIC17.05■□□□□ 0.32
Ddx56Q9D0R4 Gm23634-201ENSMUST00000175071 91 ntBASIC17.05■□□□□ 0.32
Ddx56Q9D0R4 Grcc10-201ENSMUST00000004389 863 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
Ddx56Q9D0R4 Psmd12-203ENSMUST00000106752 1955 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
Ddx56Q9D0R4 Atxn7l3-202ENSMUST00000107132 3706 ntAPPRIS P4 TSL 5 BASIC17.05■□□□□ 0.32
Ddx56Q9D0R4 Ankrd10-201ENSMUST00000033905 2285 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
Ddx56Q9D0R4 Tsc22d2-203ENSMUST00000199164 4659 ntAPPRIS ALT2 TSL 1 (best) BASIC17.05■□□□□ 0.32
Ddx56Q9D0R4 Rad23a-202ENSMUST00000109761 1842 ntAPPRIS ALT1 TSL 1 (best) BASIC17.05■□□□□ 0.32
Ddx56Q9D0R4 Cnksr2-201ENSMUST00000026750 5738 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
Ddx56Q9D0R4 H2-DMb1-201ENSMUST00000114232 1404 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
Ddx56Q9D0R4 Haghl-201ENSMUST00000077938 1405 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
Ddx56Q9D0R4 Mettl21a-202ENSMUST00000114079 2030 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
Ddx56Q9D0R4 Nkx2-1-201ENSMUST00000001536 2809 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
Ddx56Q9D0R4 Naprt-201ENSMUST00000023237 1890 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
Ddx56Q9D0R4 Atp6v1b1-206ENSMUST00000206911 1591 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
Ddx56Q9D0R4 Tmem60-201ENSMUST00000115259 1147 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
Ddx56Q9D0R4 Gm20033-201ENSMUST00000180470 572 ntTSL 3 BASIC17.04■□□□□ 0.32
Ddx56Q9D0R4 Gm6345-202ENSMUST00000180900 204 ntBASIC17.04■□□□□ 0.32
Ddx56Q9D0R4 Ankrd39-202ENSMUST00000194894 664 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
Ddx56Q9D0R4 Ermp1-203ENSMUST00000159692 7058 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
Ddx56Q9D0R4 Cpne6-207ENSMUST00000171643 2016 ntAPPRIS P3 TSL 5 BASIC17.04■□□□□ 0.32
Ddx56Q9D0R4 Rabl6-201ENSMUST00000058137 3230 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
Ddx56Q9D0R4 Mvk-201ENSMUST00000043760 1660 ntAPPRIS P3 TSL 1 (best) BASIC17.04■□□□□ 0.32
Ddx56Q9D0R4 Mms22l-202ENSMUST00000108222 4478 ntAPPRIS P1 TSL 5 BASIC17.04■□□□□ 0.32
Ddx56Q9D0R4 Ptn-201ENSMUST00000101534 1614 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
Ddx56Q9D0R4 Pde8b-202ENSMUST00000067082 2598 ntAPPRIS ALT2 TSL 5 BASIC17.03■□□□□ 0.32
Ddx56Q9D0R4 Bicdl1-204ENSMUST00000121746 1568 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
Ddx56Q9D0R4 Dand5-201ENSMUST00000065539 1584 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
Ddx56Q9D0R4 Mta1-203ENSMUST00000109723 2790 ntAPPRIS ALT2 TSL 5 BASIC17.03■□□□□ 0.32
Ddx56Q9D0R4 Mta1-204ENSMUST00000109726 2775 ntAPPRIS P3 TSL 1 (best) BASIC17.03■□□□□ 0.32
Ddx56Q9D0R4 Mta1-205ENSMUST00000109727 2789 ntAPPRIS ALT2 TSL 1 (best) BASIC17.03■□□□□ 0.32
Ddx56Q9D0R4 Gda-201ENSMUST00000087600 5428 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
Ddx56Q9D0R4 Apoa5-202ENSMUST00000121598 2515 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
Ddx56Q9D0R4 Xrcc1-205ENSMUST00000205573 2528 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
Ddx56Q9D0R4 Dcaf17-203ENSMUST00000112159 2490 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
Ddx56Q9D0R4 Psmd8-203ENSMUST00000186182 1512 ntAPPRIS P2 TSL 1 (best) BASIC17.03■□□□□ 0.32
Ddx56Q9D0R4 Actg1-202ENSMUST00000071555 1952 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
Ddx56Q9D0R4 Psme2-208ENSMUST00000161807 962 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
Ddx56Q9D0R4 Bex3-204ENSMUST00000178632 933 ntAPPRIS P3 TSL 2 BASIC17.03■□□□□ 0.32
Ddx56Q9D0R4 Cd70-201ENSMUST00000019633 842 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
Ddx56Q9D0R4 Lamtor5-202ENSMUST00000199317 743 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
Ddx56Q9D0R4 Flt3l-206ENSMUST00000210197 834 ntAPPRIS ALT2 TSL 5 BASIC17.03■□□□□ 0.32
Ddx56Q9D0R4 BC049762-201ENSMUST00000054226 760 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
Ddx56Q9D0R4 Taar2-201ENSMUST00000079134 1020 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
Ddx56Q9D0R4 Add1-204ENSMUST00000114338 4007 ntAPPRIS ALT2 TSL 1 (best) BASIC17.03■□□□□ 0.32
Ddx56Q9D0R4 Aaed1-202ENSMUST00000220895 2858 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
Ddx56Q9D0R4 Epm2a-201ENSMUST00000069106 3287 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
Ddx56Q9D0R4 Fars2-201ENSMUST00000021857 2125 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
Ddx56Q9D0R4 D430001F17Rik-201ENSMUST00000141344 1858 ntTSL 5 BASIC17.03■□□□□ 0.32
Ddx56Q9D0R4 Gal3st1-201ENSMUST00000063004 1879 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
Ddx56Q9D0R4 Dohh-201ENSMUST00000072751 1444 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
Ddx56Q9D0R4 Smox-203ENSMUST00000110180 1617 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
Ddx56Q9D0R4 Sf1-203ENSMUST00000113488 2282 ntTSL 5 BASIC17.03■□□□□ 0.32
Ddx56Q9D0R4 Luc7l2-213ENSMUST00000163047 3141 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
Ddx56Q9D0R4 Dpys-201ENSMUST00000022915 2466 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
Ddx56Q9D0R4 Arl4c-202ENSMUST00000159814 3997 ntAPPRIS P1 BASIC17.03■□□□□ 0.32
Ddx56Q9D0R4 Casq1-201ENSMUST00000003554 1847 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
Ddx56Q9D0R4 Dnm2-204ENSMUST00000165766 3063 ntTSL 1 (best) BASIC17.02■□□□□ 0.32
Ddx56Q9D0R4 Ginm1-201ENSMUST00000039763 1557 ntAPPRIS P3 TSL 1 (best) BASIC17.02■□□□□ 0.32
Ddx56Q9D0R4 Fam219b-202ENSMUST00000114200 3017 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
Ddx56Q9D0R4 Bud23-202ENSMUST00000085984 1516 ntAPPRIS P2 TSL 1 (best) BASIC17.02■□□□□ 0.32
Ddx56Q9D0R4 Gm16201-202ENSMUST00000139218 2330 ntTSL 1 (best) BASIC17.02■□□□□ 0.32
Ddx56Q9D0R4 Dgkz-202ENSMUST00000099709 3512 ntAPPRIS ALT2 TSL 5 BASIC17.02■□□□□ 0.32
Ddx56Q9D0R4 Ctu1-201ENSMUST00000038332 2475 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
Ddx56Q9D0R4 Gm6728-201ENSMUST00000178117 1065 ntBASIC17.02■□□□□ 0.32
Ddx56Q9D0R4 Snhg4-201ENSMUST00000181664 1190 ntTSL 1 (best) BASIC17.02■□□□□ 0.32
Ddx56Q9D0R4 Rpl21-202ENSMUST00000075453 899 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
Ddx56Q9D0R4 Ranbp9-201ENSMUST00000144326 3371 ntAPPRIS P2 TSL 5 BASIC17.02■□□□□ 0.32
Ddx56Q9D0R4 Dmgdh-201ENSMUST00000048001 2992 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.31
Ddx56Q9D0R4 Snrpd2-201ENSMUST00000049294 1420 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.31
Ddx56Q9D0R4 Ccdc174-201ENSMUST00000037783 1752 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.31
Ddx56Q9D0R4 Hoxaas2-202ENSMUST00000155922 1567 ntTSL 1 (best) BASIC17.02■□□□□ 0.31
Ddx56Q9D0R4 Pnkp-202ENSMUST00000098478 1550 ntTSL 1 (best) BASIC17.02■□□□□ 0.31
Ddx56Q9D0R4 Pgc-201ENSMUST00000024782 1388 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.31
Ddx56Q9D0R4 Rrbp1-201ENSMUST00000016072 5177 ntAPPRIS P4 TSL 5 BASIC17.01■□□□□ 0.31
Ddx56Q9D0R4 Urgcp-201ENSMUST00000053427 5527 ntAPPRIS ALT2 TSL 5 BASIC17.01■□□□□ 0.31
Ddx56Q9D0R4 Chn1-203ENSMUST00000112024 4050 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
Ddx56Q9D0R4 Chn1-210ENSMUST00000180045 4050 ntTSL 1 (best) BASIC17.01■□□□□ 0.31
Ddx56Q9D0R4 Parg-201ENSMUST00000022470 4413 ntAPPRIS P2 TSL 1 (best) BASIC17.01■□□□□ 0.31
Ddx56Q9D0R4 Wscd1-202ENSMUST00000108510 2956 ntAPPRIS P1 TSL 5 BASIC17.01■□□□□ 0.31
Ddx56Q9D0R4 Col11a2-202ENSMUST00000114252 5620 ntAPPRIS ALT2 TSL 5 BASIC17.01■□□□□ 0.31
Ddx56Q9D0R4 Gm11950-201ENSMUST00000121615 838 ntBASIC17.01■□□□□ 0.31
Ddx56Q9D0R4 AA414768-201ENSMUST00000121924 1257 ntBASIC17.01■□□□□ 0.31
Ddx56Q9D0R4 AC156832.2-201ENSMUST00000216217 1295 ntTSL 1 (best) BASIC17.01■□□□□ 0.31
Ddx56Q9D0R4 Papd4-201ENSMUST00000048702 2990 ntAPPRIS P2 TSL 1 (best) BASIC17.01■□□□□ 0.31
Ddx56Q9D0R4 Sh3yl1-201ENSMUST00000020997 1750 ntAPPRIS P3 TSL 1 (best) BASIC17.01■□□□□ 0.31
Ddx56Q9D0R4 Nkx1-2-201ENSMUST00000054562 3264 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
Ddx56Q9D0R4 Renbp-202ENSMUST00000116578 1418 ntAPPRIS P2 TSL 1 (best) BASIC17.01■□□□□ 0.31
Ddx56Q9D0R4 Sh3glb1-205ENSMUST00000199854 1416 ntTSL 5 BASIC17.01■□□□□ 0.31
Retrieved 100 of 76,532 protein–RNA pairs in 22.3 ms