Protein–RNA interactions for Protein: Q9CU62

Smc1a, Structural maintenance of chromosomes protein 1A, mousemouse

Known RBP Predictions only

Length 1,233 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Smc1aQ9CU62 Rpl14-201ENSMUST00000165532 1009 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
Smc1aQ9CU62 Gm28876-201ENSMUST00000188137 703 ntTSL 3 BASIC18.12■□□□□ 0.49
Smc1aQ9CU62 Rpl18a-206ENSMUST00000212709 700 ntTSL 2 BASIC18.12■□□□□ 0.49
Smc1aQ9CU62 Pdrg1-201ENSMUST00000028972 1273 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
Smc1aQ9CU62 Prkag2-203ENSMUST00000114975 2205 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
Smc1aQ9CU62 Ankra2-204ENSMUST00000150352 2217 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
Smc1aQ9CU62 Gm16759-204ENSMUST00000191455 4272 ntTSL 5 BASIC18.12■□□□□ 0.49
Smc1aQ9CU62 Tmem254b-201ENSMUST00000022418 1447 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
Smc1aQ9CU62 Smarcc1-204ENSMUST00000197984 3538 ntAPPRIS ALT2 TSL 1 (best) BASIC18.12■□□□□ 0.49
Smc1aQ9CU62 Proc-201ENSMUST00000171765 1566 ntAPPRIS P1 TSL 5 BASIC18.12■□□□□ 0.49
Smc1aQ9CU62 Plcl2-201ENSMUST00000043938 4050 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
Smc1aQ9CU62 Tcf3-206ENSMUST00000105342 2928 ntAPPRIS ALT2 TSL 1 (best) BASIC18.12■□□□□ 0.49
Smc1aQ9CU62 Taf5l-202ENSMUST00000165628 2973 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
Smc1aQ9CU62 H2-Q10-202ENSMUST00000174525 1991 ntAPPRIS P1 TSL 5 BASIC18.11■□□□□ 0.49
Smc1aQ9CU62 Scrt1-202ENSMUST00000164703 3478 ntAPPRIS P1 TSL 2 BASIC18.11■□□□□ 0.49
Smc1aQ9CU62 Bnip2-201ENSMUST00000034754 2464 ntAPPRIS P4 TSL 1 (best) BASIC18.11■□□□□ 0.49
Smc1aQ9CU62 Dmpk-202ENSMUST00000108473 2588 ntAPPRIS ALT2 TSL 1 (best) BASIC18.11■□□□□ 0.49
Smc1aQ9CU62 March8-201ENSMUST00000079012 4450 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
Smc1aQ9CU62 Hps5-202ENSMUST00000107653 4702 ntAPPRIS ALT2 TSL 1 (best) BASIC18.11■□□□□ 0.49
Smc1aQ9CU62 Magi1-201ENSMUST00000055224 7007 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
Smc1aQ9CU62 Rasgrp1-207ENSMUST00000178884 5104 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
Smc1aQ9CU62 Nsmaf-201ENSMUST00000029910 3507 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
Smc1aQ9CU62 Atp5g1-202ENSMUST00000107684 596 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
Smc1aQ9CU62 Flg-207ENSMUST00000180293 768 ntAPPRIS ALT2 BASIC18.11■□□□□ 0.49
Smc1aQ9CU62 Rpl36al-201ENSMUST00000054544 526 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
Smc1aQ9CU62 Gm7461-201ENSMUST00000058918 827 ntBASIC18.11■□□□□ 0.49
Smc1aQ9CU62 Zmynd11-207ENSMUST00000110638 4003 ntTSL 5 BASIC18.11■□□□□ 0.49
Smc1aQ9CU62 Tmem241-205ENSMUST00000209859 1426 ntAPPRIS P4 TSL 1 (best) BASIC18.11■□□□□ 0.49
Smc1aQ9CU62 Ofd1-201ENSMUST00000049501 4453 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
Smc1aQ9CU62 H6pd-201ENSMUST00000030830 4745 ntAPPRIS P3 TSL 1 (best) BASIC18.11■□□□□ 0.49
Smc1aQ9CU62 BC029722-201ENSMUST00000124586 1615 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
Smc1aQ9CU62 Hr-201ENSMUST00000022691 5487 ntAPPRIS P2 TSL 1 (best) BASIC18.11■□□□□ 0.49
Smc1aQ9CU62 Gm3488-202ENSMUST00000181562 1945 ntAPPRIS P5 TSL 5 BASIC18.11■□□□□ 0.49
Smc1aQ9CU62 Nr1h2-203ENSMUST00000107911 1988 ntAPPRIS ALT2 TSL 1 (best) BASIC18.11■□□□□ 0.49
Smc1aQ9CU62 Slc22a12-201ENSMUST00000113451 2213 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
Smc1aQ9CU62 Yes1-205ENSMUST00000202543 2657 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
Smc1aQ9CU62 Htatsf1-201ENSMUST00000088652 2810 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
Smc1aQ9CU62 Sclt1-201ENSMUST00000026866 3005 ntAPPRIS P1 TSL 5 BASIC18.11■□□□□ 0.49
Smc1aQ9CU62 Fcho1-209ENSMUST00000146100 3188 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
Smc1aQ9CU62 Trpc1-204ENSMUST00000189137 4559 ntAPPRIS P3 TSL 1 (best) BASIC18.11■□□□□ 0.49
Smc1aQ9CU62 Rgl1-201ENSMUST00000027760 4572 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
Smc1aQ9CU62 Fgfr1-214ENSMUST00000178276 4741 ntTSL 5 BASIC18.11■□□□□ 0.49
Smc1aQ9CU62 Fem1b-201ENSMUST00000034775 6785 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
Smc1aQ9CU62 Zmynd19-201ENSMUST00000028350 3903 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
Smc1aQ9CU62 Matn4-201ENSMUST00000103103 2304 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
Smc1aQ9CU62 Ankrd23-201ENSMUST00000054665 1964 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
Smc1aQ9CU62 Dnajb2-208ENSMUST00000188346 1823 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
Smc1aQ9CU62 Tmem175-204ENSMUST00000146207 1686 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
Smc1aQ9CU62 Eva1c-201ENSMUST00000037539 1698 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
Smc1aQ9CU62 Gm20460-201ENSMUST00000168709 1572 ntTSL 5 BASIC18.1■□□□□ 0.49
Smc1aQ9CU62 Aqp5-202ENSMUST00000169082 1551 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
Smc1aQ9CU62 Hmg20b-213ENSMUST00000167481 1321 ntAPPRIS P1 TSL 5 BASIC18.1■□□□□ 0.49
Smc1aQ9CU62 Fgf8-205ENSMUST00000111927 843 ntAPPRIS ALT2 TSL 1 (best) BASIC18.1■□□□□ 0.49
Smc1aQ9CU62 Dpy30-201ENSMUST00000112571 790 ntAPPRIS P1 TSL 2 BASIC18.1■□□□□ 0.49
Smc1aQ9CU62 1500009L16Rik-201ENSMUST00000150459 1194 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
Smc1aQ9CU62 Gm18958-201ENSMUST00000174258 762 ntBASIC18.1■□□□□ 0.49
Smc1aQ9CU62 Gm3272-201ENSMUST00000181181 1229 ntBASIC18.1■□□□□ 0.49
Smc1aQ9CU62 Gm10358-201ENSMUST00000212864 1250 ntAPPRIS P1 BASIC18.1■□□□□ 0.49
Smc1aQ9CU62 4933406B15Rik-201ENSMUST00000220065 1182 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
Smc1aQ9CU62 Iscu-201ENSMUST00000026937 957 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
Smc1aQ9CU62 Hist1h2af-201ENSMUST00000073261 399 ntAPPRIS P1 BASIC18.1■□□□□ 0.49
Smc1aQ9CU62 Gm10566-201ENSMUST00000086739 996 ntBASIC18.1■□□□□ 0.49
Smc1aQ9CU62 Itgb4-201ENSMUST00000021107 6014 ntAPPRIS P2 TSL 5 BASIC18.1■□□□□ 0.49
Smc1aQ9CU62 Mapk14-201ENSMUST00000004990 3547 ntAPPRIS ALT1 TSL 1 (best) BASIC18.1■□□□□ 0.49
Smc1aQ9CU62 Mapk14-202ENSMUST00000062694 3547 ntAPPRIS P3 TSL 1 (best) BASIC18.1■□□□□ 0.49
Smc1aQ9CU62 Papd4-205ENSMUST00000225868 3081 ntAPPRIS ALT1 BASIC18.1■□□□□ 0.49
Smc1aQ9CU62 Nrros-201ENSMUST00000099991 2548 ntAPPRIS ALT2 TSL 1 (best) BASIC18.1■□□□□ 0.49
Smc1aQ9CU62 App-202ENSMUST00000226232 3120 ntAPPRIS ALT2 BASIC18.09■□□□□ 0.49
Smc1aQ9CU62 Ccdc105-201ENSMUST00000105383 1714 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
Smc1aQ9CU62 Slc25a3-201ENSMUST00000076694 1612 ntAPPRIS P2 TSL 1 (best) BASIC18.09■□□□□ 0.49
Smc1aQ9CU62 Snx8-201ENSMUST00000031539 2627 ntAPPRIS P2 TSL 1 (best) BASIC18.09■□□□□ 0.49
Smc1aQ9CU62 Rhpn2-201ENSMUST00000032705 3508 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
Smc1aQ9CU62 Ephb4-203ENSMUST00000111055 4296 ntAPPRIS ALT2 TSL 1 (best) BASIC18.09■□□□□ 0.49
Smc1aQ9CU62 Ppt1-201ENSMUST00000030412 2381 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
Smc1aQ9CU62 P3h1-203ENSMUST00000102662 2977 ntAPPRIS P3 TSL 5 BASIC18.09■□□□□ 0.49
Smc1aQ9CU62 Tmsb10-202ENSMUST00000114049 690 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
Smc1aQ9CU62 Gm6623-201ENSMUST00000173570 544 ntBASIC18.09■□□□□ 0.49
Smc1aQ9CU62 Umpk-ps-201ENSMUST00000211897 827 ntBASIC18.09■□□□□ 0.49
Smc1aQ9CU62 Sox6os-201ENSMUST00000032900 420 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
Smc1aQ9CU62 Stxbp6-201ENSMUST00000053768 4553 ntAPPRIS P1 TSL 5 BASIC18.09■□□□□ 0.49
Smc1aQ9CU62 A230103J11Rik-202ENSMUST00000156084 2086 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
Smc1aQ9CU62 Lgr6-202ENSMUST00000137968 2820 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
Smc1aQ9CU62 Zkscan3-208ENSMUST00000224820 5398 ntBASIC18.09■□□□□ 0.49
Smc1aQ9CU62 Syn1-201ENSMUST00000081893 3209 ntAPPRIS P4 TSL 5 BASIC18.09■□□□□ 0.49
Smc1aQ9CU62 Vangl2-203ENSMUST00000111264 2349 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
Smc1aQ9CU62 Kif17-204ENSMUST00000105821 2271 ntAPPRIS ALT2 TSL 1 (best) BASIC18.09■□□□□ 0.49
Smc1aQ9CU62 Gpd1-203ENSMUST00000162194 1515 ntTSL 5 BASIC18.08■□□□□ 0.49
Smc1aQ9CU62 Trmo-201ENSMUST00000030015 1527 ntAPPRIS ALT2 TSL 1 (best) BASIC18.08■□□□□ 0.49
Smc1aQ9CU62 Mtif3-201ENSMUST00000016654 2131 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.49
Smc1aQ9CU62 Gm19430-201ENSMUST00000193847 2137 ntBASIC18.08■□□□□ 0.49
Smc1aQ9CU62 Pdgfa-203ENSMUST00000110896 1363 ntAPPRIS P1 TSL 5 BASIC18.08■□□□□ 0.49
Smc1aQ9CU62 Grwd1-201ENSMUST00000107723 1898 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.49
Smc1aQ9CU62 Rnf103-202ENSMUST00000114178 3431 ntTSL 1 (best) BASIC18.08■□□□□ 0.48
Smc1aQ9CU62 Gm11620-201ENSMUST00000118770 1845 ntBASIC18.08■□□□□ 0.48
Smc1aQ9CU62 Wnt8b-201ENSMUST00000041163 3376 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.48
Smc1aQ9CU62 Srpx-202ENSMUST00000115543 1218 ntAPPRIS ALT2 TSL 1 (best) BASIC18.08■□□□□ 0.48
Smc1aQ9CU62 Echdc2-203ENSMUST00000116307 893 ntTSL 5 BASIC18.08■□□□□ 0.48
Smc1aQ9CU62 Cyp4f41-ps-201ENSMUST00000126790 1077 ntBASIC18.08■□□□□ 0.48
Smc1aQ9CU62 Lamtor5-201ENSMUST00000145735 881 ntTSL 1 (best) BASIC18.08■□□□□ 0.48
Smc1aQ9CU62 Mir3081-201ENSMUST00000175305 84 ntBASIC18.08■□□□□ 0.48
Retrieved 100 of 76,532 protein–RNA pairs in 21.7 ms