Protein–RNA interactions for Protein: Q99LM2

Cdk5rap3, CDK5 regulatory subunit-associated protein 3, mousemouse

Predictions only

Length 503 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cdk5rap3Q99LM2 Mvk-201ENSMUST00000043760 1660 ntAPPRIS P3 TSL 1 (best) BASIC16.81■□□□□ 0.28
Cdk5rap3Q99LM2 Rbmxl1-201ENSMUST00000049245 1695 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
Cdk5rap3Q99LM2 Slc38a10-203ENSMUST00000076697 1672 ntAPPRIS ALT2 TSL 1 (best) BASIC16.81■□□□□ 0.28
Cdk5rap3Q99LM2 Myo16-204ENSMUST00000208309 2462 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
Cdk5rap3Q99LM2 Wdr12-202ENSMUST00000117438 3251 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
Cdk5rap3Q99LM2 Rgp1-203ENSMUST00000117140 1635 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
Cdk5rap3Q99LM2 Npm1-201ENSMUST00000075641 1633 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
Cdk5rap3Q99LM2 Atxn7l2-203ENSMUST00000117784 2387 ntAPPRIS P2 TSL 1 (best) BASIC16.81■□□□□ 0.28
Cdk5rap3Q99LM2 Hnrnpll-201ENSMUST00000061331 3116 ntAPPRIS P1 TSL 5 BASIC16.81■□□□□ 0.28
Cdk5rap3Q99LM2 Sptlc2-201ENSMUST00000021424 6710 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
Cdk5rap3Q99LM2 2810408A11Rik-204ENSMUST00000108621 1455 ntAPPRIS ALT2 TSL 5 BASIC16.81■□□□□ 0.28
Cdk5rap3Q99LM2 Ndufaf3-201ENSMUST00000074208 1487 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
Cdk5rap3Q99LM2 Endov-203ENSMUST00000106245 5126 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
Cdk5rap3Q99LM2 Mars-201ENSMUST00000037290 2939 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
Cdk5rap3Q99LM2 Nepro-201ENSMUST00000048788 2866 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
Cdk5rap3Q99LM2 Nagpa-201ENSMUST00000023911 2143 ntAPPRIS P2 TSL 1 (best) BASIC16.81■□□□□ 0.28
Cdk5rap3Q99LM2 Gm16754-201ENSMUST00000181222 2077 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
Cdk5rap3Q99LM2 Sptbn4-203ENSMUST00000108363 4724 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
Cdk5rap3Q99LM2 Sptbn4-204ENSMUST00000108364 4740 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
Cdk5rap3Q99LM2 Rrp15-201ENSMUST00000001339 1321 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
Cdk5rap3Q99LM2 Gm19569-202ENSMUST00000184658 1305 ntTSL 2 BASIC16.81■□□□□ 0.28
Cdk5rap3Q99LM2 Camsap3-201ENSMUST00000057028 4450 ntAPPRIS P3 TSL 1 (best) BASIC16.81■□□□□ 0.28
Cdk5rap3Q99LM2 Gm15556-201ENSMUST00000122904 663 ntTSL 5 BASIC16.81■□□□□ 0.28
Cdk5rap3Q99LM2 Khdc3-204ENSMUST00000173734 1228 ntAPPRIS ALT2 TSL 1 (best) BASIC16.81■□□□□ 0.28
Cdk5rap3Q99LM2 Map3k7cl-201ENSMUST00000026700 1652 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
Cdk5rap3Q99LM2 AC133083.1-201ENSMUST00000221736 2209 ntBASIC16.81■□□□□ 0.28
Cdk5rap3Q99LM2 Homer2-206ENSMUST00000207983 1634 ntAPPRIS P3 TSL 1 (best) BASIC16.81■□□□□ 0.28
Cdk5rap3Q99LM2 Hnrnph1-202ENSMUST00000077817 2126 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
Cdk5rap3Q99LM2 Gm15582-201ENSMUST00000132849 1581 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
Cdk5rap3Q99LM2 Scrn2-201ENSMUST00000021249 1530 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
Cdk5rap3Q99LM2 Mapk14-201ENSMUST00000004990 3547 ntAPPRIS ALT1 TSL 1 (best) BASIC16.8■□□□□ 0.28
Cdk5rap3Q99LM2 Mapk14-202ENSMUST00000062694 3547 ntAPPRIS P3 TSL 1 (best) BASIC16.8■□□□□ 0.28
Cdk5rap3Q99LM2 Hexb-201ENSMUST00000022169 1905 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
Cdk5rap3Q99LM2 Lmo4-202ENSMUST00000121112 1447 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
Cdk5rap3Q99LM2 Zfp384-208ENSMUST00000112428 3132 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
Cdk5rap3Q99LM2 C2cd2-201ENSMUST00000170757 6555 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
Cdk5rap3Q99LM2 Zdhhc6-209ENSMUST00000225495 1711 ntBASIC16.8■□□□□ 0.28
Cdk5rap3Q99LM2 Syt8-202ENSMUST00000105976 1289 ntAPPRIS ALT2 TSL 1 (best) BASIC16.8■□□□□ 0.28
Cdk5rap3Q99LM2 Syt8-205ENSMUST00000122393 1291 ntAPPRIS ALT2 TSL 1 (best) BASIC16.8■□□□□ 0.28
Cdk5rap3Q99LM2 Gm29994-201ENSMUST00000195495 1193 ntBASIC16.8■□□□□ 0.28
Cdk5rap3Q99LM2 Gm30025-201ENSMUST00000218555 728 ntBASIC16.8■□□□□ 0.28
Cdk5rap3Q99LM2 Mrpl14-201ENSMUST00000024734 645 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
Cdk5rap3Q99LM2 Krt90-201ENSMUST00000023714 2534 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
Cdk5rap3Q99LM2 Cd164-201ENSMUST00000019962 2922 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
Cdk5rap3Q99LM2 Ret-202ENSMUST00000088790 4497 ntAPPRIS ALT2 TSL 1 (best) BASIC16.8■□□□□ 0.28
Cdk5rap3Q99LM2 Miga1-205ENSMUST00000199397 2842 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
Cdk5rap3Q99LM2 Anks6-201ENSMUST00000084616 3552 ntAPPRIS P1 TSL 5 BASIC16.8■□□□□ 0.28
Cdk5rap3Q99LM2 Fbxo17-203ENSMUST00000108279 1563 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
Cdk5rap3Q99LM2 Rassf7-208ENSMUST00000209500 1560 ntAPPRIS ALT2 TSL 5 BASIC16.8■□□□□ 0.28
Cdk5rap3Q99LM2 Lrch1-205ENSMUST00000228252 3125 ntAPPRIS ALT2 BASIC16.8■□□□□ 0.28
Cdk5rap3Q99LM2 Sh3bp2-203ENSMUST00000118545 3034 ntAPPRIS ALT2 TSL 1 (best) BASIC16.8■□□□□ 0.28
Cdk5rap3Q99LM2 Gm26627-201ENSMUST00000181540 1487 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
Cdk5rap3Q99LM2 Alg5-201ENSMUST00000044567 1471 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
Cdk5rap3Q99LM2 Ptch1-201ENSMUST00000021921 7725 ntAPPRIS P2 TSL 1 (best) BASIC16.8■□□□□ 0.28
Cdk5rap3Q99LM2 Plppr5-201ENSMUST00000039564 4670 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
Cdk5rap3Q99LM2 Lefty2-201ENSMUST00000085797 2473 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
Cdk5rap3Q99LM2 Arfip1-202ENSMUST00000107687 1714 ntTSL 5 BASIC16.79■□□□□ 0.28
Cdk5rap3Q99LM2 Ngrn-201ENSMUST00000117989 1317 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
Cdk5rap3Q99LM2 Tcf3-207ENSMUST00000105343 2920 ntAPPRIS ALT2 TSL 1 (best) BASIC16.79■□□□□ 0.28
Cdk5rap3Q99LM2 Plpp7-201ENSMUST00000057423 1947 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
Cdk5rap3Q99LM2 Fam160a2-203ENSMUST00000118726 2855 ntAPPRIS ALT2 TSL 1 (best) BASIC16.79■□□□□ 0.28
Cdk5rap3Q99LM2 Bad-202ENSMUST00000113423 990 ntAPPRIS ALT2 TSL 1 (best) BASIC16.79■□□□□ 0.28
Cdk5rap3Q99LM2 Smim14-202ENSMUST00000121661 1056 ntAPPRIS P1 TSL 3 BASIC16.79■□□□□ 0.28
Cdk5rap3Q99LM2 Gm14641-201ENSMUST00000136486 452 ntTSL 3 BASIC16.79■□□□□ 0.28
Cdk5rap3Q99LM2 1110046J04Rik-201ENSMUST00000147622 397 ntTSL 3 BASIC16.79■□□□□ 0.28
Cdk5rap3Q99LM2 Spcs1-201ENSMUST00000186131 1005 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
Cdk5rap3Q99LM2 Gm36967-201ENSMUST00000193814 266 ntBASIC16.79■□□□□ 0.28
Cdk5rap3Q99LM2 D030044L04Rik-201ENSMUST00000204220 1291 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
Cdk5rap3Q99LM2 Gm7213-201ENSMUST00000215977 950 ntBASIC16.79■□□□□ 0.28
Cdk5rap3Q99LM2 Akip1-201ENSMUST00000033335 1028 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
Cdk5rap3Q99LM2 Mrps12-201ENSMUST00000056078 722 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
Cdk5rap3Q99LM2 Rad51d-203ENSMUST00000092844 1228 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
Cdk5rap3Q99LM2 Spopl-203ENSMUST00000132484 6595 ntAPPRIS P1 TSL 5 BASIC16.79■□□□□ 0.28
Cdk5rap3Q99LM2 Chd4-202ENSMUST00000112390 6537 ntAPPRIS ALT2 TSL 5 BASIC16.79■□□□□ 0.28
Cdk5rap3Q99LM2 Ube2w-201ENSMUST00000117146 2181 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
Cdk5rap3Q99LM2 Tom1l2-201ENSMUST00000064019 2151 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
Cdk5rap3Q99LM2 Ggnbp1-201ENSMUST00000053683 1525 ntAPPRIS P3 TSL 1 (best) BASIC16.79■□□□□ 0.28
Cdk5rap3Q99LM2 Rft1-201ENSMUST00000064230 2387 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
Cdk5rap3Q99LM2 Shcbp1l-201ENSMUST00000042373 2092 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
Cdk5rap3Q99LM2 Mfsd4b3-201ENSMUST00000095749 1787 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
Cdk5rap3Q99LM2 Irf7-202ENSMUST00000097952 1764 ntAPPRIS ALT2 TSL 1 (best) BASIC16.79■□□□□ 0.28
Cdk5rap3Q99LM2 Ppm1h-206ENSMUST00000161487 2931 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
Cdk5rap3Q99LM2 Atg7-215ENSMUST00000183165 2012 ntTSL 5 BASIC16.79■□□□□ 0.28
Cdk5rap3Q99LM2 Pigw-202ENSMUST00000108080 1728 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
Cdk5rap3Q99LM2 Prss54-201ENSMUST00000052690 1438 ntAPPRIS ALT2 TSL 1 (best) BASIC16.79■□□□□ 0.28
Cdk5rap3Q99LM2 Neil3-201ENSMUST00000047768 2253 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
Cdk5rap3Q99LM2 Oas1g-201ENSMUST00000086368 1977 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
Cdk5rap3Q99LM2 Wac-215ENSMUST00000171042 2205 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
Cdk5rap3Q99LM2 Fndc11-201ENSMUST00000050026 1387 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
Cdk5rap3Q99LM2 Pip4k2a-201ENSMUST00000006912 3477 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
Cdk5rap3Q99LM2 Bdkrb1-202ENSMUST00000182899 1313 ntAPPRIS P1 TSL 5 BASIC16.78■□□□□ 0.28
Cdk5rap3Q99LM2 Bdkrb1-201ENSMUST00000041229 1338 ntAPPRIS P1 BASIC16.78■□□□□ 0.28
Cdk5rap3Q99LM2 Oas1b-201ENSMUST00000086377 1832 ntTSL 5 BASIC16.78■□□□□ 0.28
Cdk5rap3Q99LM2 Ube2r2-201ENSMUST00000040008 3600 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
Cdk5rap3Q99LM2 Arhgef10l-203ENSMUST00000097820 4382 ntAPPRIS ALT2 TSL 1 (best) BASIC16.78■□□□□ 0.28
Cdk5rap3Q99LM2 Fam160b1-201ENSMUST00000036407 5630 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
Cdk5rap3Q99LM2 Gm11336-201ENSMUST00000118168 334 ntBASIC16.78■□□□□ 0.28
Cdk5rap3Q99LM2 2210408F21Rik-211ENSMUST00000151800 750 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
Cdk5rap3Q99LM2 Flg-203ENSMUST00000178695 777 ntAPPRIS P5 BASIC16.78■□□□□ 0.28
Cdk5rap3Q99LM2 Gm3272-201ENSMUST00000181181 1229 ntBASIC16.78■□□□□ 0.28
Retrieved 100 of 76,532 protein–RNA pairs in 129 ms