Protein–RNA interactions for Protein: Q99LI9

Clp1, Polyribonucleotide 5'-hydroxyl-kinase Clp1, mousemouse

Predictions only

Length 425 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Clp1Q99LI9 Rbm12b1-202ENSMUST00000069128 3069 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
Clp1Q99LI9 Gm12689-201ENSMUST00000094955 1359 ntAPPRIS P1 BASIC17.06■□□□□ 0.32
Clp1Q99LI9 Anapc5-218ENSMUST00000200645 2404 ntAPPRIS ALT2 TSL 1 (best) BASIC17.06■□□□□ 0.32
Clp1Q99LI9 Rhbdl1-202ENSMUST00000183929 1349 ntTSL 5 BASIC17.06■□□□□ 0.32
Clp1Q99LI9 Rhbdd3-202ENSMUST00000101610 2333 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
Clp1Q99LI9 Chchd6-202ENSMUST00000113550 1042 ntTSL 5 BASIC17.06■□□□□ 0.32
Clp1Q99LI9 Washc3-202ENSMUST00000171151 837 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
Clp1Q99LI9 H2-Bl-211ENSMUST00000195838 1105 ntAPPRIS ALT2 TSL 1 (best) BASIC17.06■□□□□ 0.32
Clp1Q99LI9 Gm7229-201ENSMUST00000214719 1007 ntBASIC17.06■□□□□ 0.32
Clp1Q99LI9 Timm13-203ENSMUST00000218481 471 ntTSL 3 BASIC17.06■□□□□ 0.32
Clp1Q99LI9 Chchd6-201ENSMUST00000032172 1121 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
Clp1Q99LI9 6030498E09Rik-201ENSMUST00000050744 1291 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
Clp1Q99LI9 Tom1l2-201ENSMUST00000064019 2151 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
Clp1Q99LI9 Sec14l1-203ENSMUST00000103026 2589 ntAPPRIS ALT2 TSL 5 BASIC17.06■□□□□ 0.32
Clp1Q99LI9 Pea15a-201ENSMUST00000013842 2501 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
Clp1Q99LI9 Ccdc106-204ENSMUST00000207974 2492 ntTSL 2 BASIC17.06■□□□□ 0.32
Clp1Q99LI9 Tstd3-201ENSMUST00000029915 1588 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
Clp1Q99LI9 Tubb4b-201ENSMUST00000043584 1598 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
Clp1Q99LI9 Psen2-205ENSMUST00000111108 1997 ntAPPRIS P2 TSL 1 (best) BASIC17.06■□□□□ 0.32
Clp1Q99LI9 Igfbp1-201ENSMUST00000020704 1525 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
Clp1Q99LI9 Lmo4-202ENSMUST00000121112 1447 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
Clp1Q99LI9 Ebf3-204ENSMUST00000169486 4994 ntAPPRIS ALT1 TSL 5 BASIC17.05■□□□□ 0.32
Clp1Q99LI9 Adprhl1-201ENSMUST00000033825 1372 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
Clp1Q99LI9 Gpr150-201ENSMUST00000056130 2146 ntAPPRIS P1 BASIC17.05■□□□□ 0.32
Clp1Q99LI9 Cidec-202ENSMUST00000113089 1720 ntAPPRIS P2 TSL 1 (best) BASIC17.05■□□□□ 0.32
Clp1Q99LI9 Gm45844-202ENSMUST00000209325 2450 ntAPPRIS ALT2 TSL 1 (best) BASIC17.05■□□□□ 0.32
Clp1Q99LI9 Stum-205ENSMUST00000211561 1063 ntAPPRIS ALT1 TSL 5 BASIC17.05■□□□□ 0.32
Clp1Q99LI9 Elof1-203ENSMUST00000213233 810 ntAPPRIS P1 TSL 3 BASIC17.05■□□□□ 0.32
Clp1Q99LI9 Olfr615-201ENSMUST00000098198 942 ntAPPRIS P1 BASIC17.05■□□□□ 0.32
Clp1Q99LI9 Ewsr1-203ENSMUST00000079949 2588 ntAPPRIS P3 TSL 1 (best) BASIC17.05■□□□□ 0.32
Clp1Q99LI9 Rmdn3-201ENSMUST00000094695 2249 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
Clp1Q99LI9 Ache-201ENSMUST00000024099 2186 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
Clp1Q99LI9 Gstm4-201ENSMUST00000029489 1707 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
Clp1Q99LI9 Taf6l-211ENSMUST00000177056 2006 ntTSL 5 BASIC17.04■□□□□ 0.32
Clp1Q99LI9 Rab11fip3-202ENSMUST00000120691 5103 ntAPPRIS ALT2 TSL 1 (best) BASIC17.04■□□□□ 0.32
Clp1Q99LI9 Uhmk1-202ENSMUST00000123399 7775 ntTSL 5 BASIC17.04■□□□□ 0.32
Clp1Q99LI9 Rgs6-206ENSMUST00000186309 1693 ntAPPRIS P4 TSL 5 BASIC17.04■□□□□ 0.32
Clp1Q99LI9 Ube2q2-201ENSMUST00000059555 3456 ntAPPRIS P3 TSL 1 (best) BASIC17.04■□□□□ 0.32
Clp1Q99LI9 Ankib1-201ENSMUST00000043551 6426 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
Clp1Q99LI9 Drd2-201ENSMUST00000075764 2547 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
Clp1Q99LI9 Ager-209ENSMUST00000174496 1347 ntAPPRIS ALT2 TSL 1 (best) BASIC17.04■□□□□ 0.32
Clp1Q99LI9 Cxcl12-202ENSMUST00000112866 1878 ntAPPRIS ALT1 TSL 1 (best) BASIC17.04■□□□□ 0.32
Clp1Q99LI9 Pdlim5-212ENSMUST00000200043 1581 ntAPPRIS ALT2 TSL 1 (best) BASIC17.04■□□□□ 0.32
Clp1Q99LI9 Gstz1-205ENSMUST00000222885 1571 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
Clp1Q99LI9 Dlk1-203ENSMUST00000109842 1129 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
Clp1Q99LI9 4930481B07Rik-201ENSMUST00000128160 1089 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
Clp1Q99LI9 Pcp2-204ENSMUST00000136105 504 ntAPPRIS P4 TSL 1 (best) BASIC17.04■□□□□ 0.32
Clp1Q99LI9 Gnao1-207ENSMUST00000138659 5526 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
Clp1Q99LI9 Slc25a5-201ENSMUST00000016463 1240 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
Clp1Q99LI9 Gm20478-201ENSMUST00000173648 1031 ntTSL 3 BASIC17.04■□□□□ 0.32
Clp1Q99LI9 BC022687-202ENSMUST00000177808 1207 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
Clp1Q99LI9 Tbc1d7-202ENSMUST00000179852 1246 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
Clp1Q99LI9 Gm37153-201ENSMUST00000193637 231 ntBASIC17.04■□□□□ 0.32
Clp1Q99LI9 Gm30097-202ENSMUST00000194580 329 ntTSL 3 BASIC17.04■□□□□ 0.32
Clp1Q99LI9 Sytl3-201ENSMUST00000097430 2100 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
Clp1Q99LI9 Ssx2ip-204ENSMUST00000106153 3446 ntAPPRIS P3 TSL 1 (best) BASIC17.04■□□□□ 0.32
Clp1Q99LI9 Irf7-202ENSMUST00000097952 1764 ntAPPRIS ALT2 TSL 1 (best) BASIC17.04■□□□□ 0.32
Clp1Q99LI9 Gm14317-201ENSMUST00000151754 1464 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
Clp1Q99LI9 Gm32369-201ENSMUST00000222630 1467 ntTSL 5 BASIC17.04■□□□□ 0.32
Clp1Q99LI9 Itgb5-201ENSMUST00000069345 3056 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
Clp1Q99LI9 Map3k5-201ENSMUST00000095806 5450 ntAPPRIS P2 TSL 1 (best) BASIC17.04■□□□□ 0.32
Clp1Q99LI9 Cds2-202ENSMUST00000103181 8396 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
Clp1Q99LI9 Nfatc3-201ENSMUST00000109308 5984 ntAPPRIS P2 TSL 1 (best) BASIC17.04■□□□□ 0.32
Clp1Q99LI9 Gm29514-202ENSMUST00000186665 2214 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
Clp1Q99LI9 Tmem131-208ENSMUST00000194563 6698 ntAPPRIS P1 TSL 5 BASIC17.04■□□□□ 0.32
Clp1Q99LI9 Sft2d2-201ENSMUST00000043338 5535 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
Clp1Q99LI9 Chaf1b-201ENSMUST00000023666 1922 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
Clp1Q99LI9 Hand1-201ENSMUST00000036917 1904 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
Clp1Q99LI9 Sar1a-201ENSMUST00000020285 2613 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
Clp1Q99LI9 Pdap1-201ENSMUST00000031627 2353 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
Clp1Q99LI9 Zfp119b-201ENSMUST00000056147 1889 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
Clp1Q99LI9 Mapk1-202ENSMUST00000069107 5099 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
Clp1Q99LI9 Zdhhc24-201ENSMUST00000006632 2558 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
Clp1Q99LI9 Nosip-201ENSMUST00000003513 1814 ntAPPRIS P3 TSL 1 (best) BASIC17.03■□□□□ 0.32
Clp1Q99LI9 Iqcd-201ENSMUST00000069259 1577 ntAPPRIS ALT2 TSL 1 (best) BASIC17.03■□□□□ 0.32
Clp1Q99LI9 Mon1a-201ENSMUST00000035202 2042 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
Clp1Q99LI9 Olah-203ENSMUST00000194918 1764 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
Clp1Q99LI9 Grip1-201ENSMUST00000041962 5343 ntAPPRIS ALT2 TSL 1 (best) BASIC17.03■□□□□ 0.32
Clp1Q99LI9 Vkorc1l1-203ENSMUST00000201855 4809 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
Clp1Q99LI9 Mfsd13a-202ENSMUST00000128041 2223 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
Clp1Q99LI9 Map4k5-210ENSMUST00000171211 4334 ntTSL 2 BASIC17.03■□□□□ 0.32
Clp1Q99LI9 Kifc3-203ENSMUST00000169748 3384 ntAPPRIS ALT2 TSL 1 (best) BASIC17.03■□□□□ 0.32
Clp1Q99LI9 Dio1-202ENSMUST00000106748 396 ntTSL 5 BASIC17.03■□□□□ 0.32
Clp1Q99LI9 Nkain4-202ENSMUST00000108873 865 ntAPPRIS ALT2 TSL 1 (best) BASIC17.03■□□□□ 0.32
Clp1Q99LI9 Gm27300-201ENSMUST00000184085 97 ntBASIC17.03■□□□□ 0.32
Clp1Q99LI9 Gm27335-201ENSMUST00000184758 97 ntBASIC17.03■□□□□ 0.32
Clp1Q99LI9 AC159295.1-201ENSMUST00000225326 940 ntBASIC17.03■□□□□ 0.32
Clp1Q99LI9 AC117588.1-201ENSMUST00000228510 999 ntBASIC17.03■□□□□ 0.32
Clp1Q99LI9 Rhebl1-201ENSMUST00000024518 1185 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
Clp1Q99LI9 Olah-202ENSMUST00000115087 1479 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
Clp1Q99LI9 Gm38575-203ENSMUST00000215824 1490 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
Clp1Q99LI9 Atp5b-201ENSMUST00000026459 1916 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
Clp1Q99LI9 Trip10-205ENSMUST00000224885 2136 ntAPPRIS ALT2 BASIC17.03■□□□□ 0.32
Clp1Q99LI9 Krt12-201ENSMUST00000017741 1852 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
Clp1Q99LI9 Arl1-202ENSMUST00000116234 2080 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
Clp1Q99LI9 Aanat-205ENSMUST00000153476 1353 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
Clp1Q99LI9 St7l-202ENSMUST00000106769 2428 ntTSL 1 (best) BASIC17.02■□□□□ 0.32
Clp1Q99LI9 Arhgef17-204ENSMUST00000209041 4516 ntAPPRIS ALT2 TSL 1 (best) BASIC17.02■□□□□ 0.32
Clp1Q99LI9 Fam104a-201ENSMUST00000120194 2619 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
Clp1Q99LI9 Eif5-201ENSMUST00000050993 1969 ntAPPRIS P2 TSL 1 (best) BASIC17.02■□□□□ 0.32
Retrieved 100 of 76,532 protein–RNA pairs in 30.1 ms