Protein–RNA interactions for Protein: Q91Y11

Pcdha9, Protocadherin alpha-9, mousemouse

Predictions only

Length 979 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Pcdha9Q91Y11 Sh3yl1-201ENSMUST00000020997 1750 ntAPPRIS P3 TSL 1 (best) BASIC17.23■□□□□ 0.35
Pcdha9Q91Y11 Rps6kb2-201ENSMUST00000025749 1864 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
Pcdha9Q91Y11 Klk12-202ENSMUST00000107970 1115 ntAPPRIS P1 TSL 5 BASIC17.23■□□□□ 0.35
Pcdha9Q91Y11 Adal-203ENSMUST00000110662 1231 ntTSL 5 BASIC17.23■□□□□ 0.35
Pcdha9Q91Y11 Znhit1-203ENSMUST00000111090 698 ntTSL 2 BASIC17.23■□□□□ 0.35
Pcdha9Q91Y11 Gas5-203ENSMUST00000159119 665 ntTSL 5 BASIC17.23■□□□□ 0.35
Pcdha9Q91Y11 A730015C16Rik-201ENSMUST00000164855 1221 ntAPPRIS P1 BASIC17.23■□□□□ 0.35
Pcdha9Q91Y11 Mir3081-201ENSMUST00000175305 84 ntBASIC17.23■□□□□ 0.35
Pcdha9Q91Y11 Gm27357-201ENSMUST00000183754 135 ntBASIC17.23■□□□□ 0.35
Pcdha9Q91Y11 1700001G17Rik-201ENSMUST00000191779 889 ntBASIC17.23■□□□□ 0.35
Pcdha9Q91Y11 Hist1h2ab-201ENSMUST00000078369 473 ntAPPRIS P1 BASIC17.23■□□□□ 0.35
Pcdha9Q91Y11 Gdpd5-201ENSMUST00000037528 4611 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
Pcdha9Q91Y11 Eif6-202ENSMUST00000109638 1382 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
Pcdha9Q91Y11 Gm29455-202ENSMUST00000186697 1369 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
Pcdha9Q91Y11 Hspb6-201ENSMUST00000044048 1363 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
Pcdha9Q91Y11 Snx25-203ENSMUST00000110378 3445 ntAPPRIS ALT2 TSL 5 BASIC17.23■□□□□ 0.35
Pcdha9Q91Y11 Synpo-201ENSMUST00000097566 5060 ntAPPRIS P3 TSL 1 (best) BASIC17.23■□□□□ 0.35
Pcdha9Q91Y11 Zbtb48-201ENSMUST00000066715 2218 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
Pcdha9Q91Y11 Fam159b-201ENSMUST00000043061 1310 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
Pcdha9Q91Y11 Hnrnpl-202ENSMUST00000172529 1898 ntTSL 5 BASIC17.22■□□□□ 0.35
Pcdha9Q91Y11 Zfp710-201ENSMUST00000049680 4721 ntAPPRIS P4 TSL 1 (best) BASIC17.22■□□□□ 0.35
Pcdha9Q91Y11 Gm14261-201ENSMUST00000145105 1429 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
Pcdha9Q91Y11 Fbxo9-202ENSMUST00000085311 2155 ntAPPRIS ALT1 TSL 1 (best) BASIC17.22■□□□□ 0.35
Pcdha9Q91Y11 Rgs9-202ENSMUST00000103062 1743 ntTSL 5 BASIC17.22■□□□□ 0.35
Pcdha9Q91Y11 Gstm4-201ENSMUST00000029489 1707 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
Pcdha9Q91Y11 Iqsec2-203ENSMUST00000112605 6017 ntAPPRIS ALT2 TSL 5 BASIC17.22■□□□□ 0.35
Pcdha9Q91Y11 Slc35f2-201ENSMUST00000048670 2558 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
Pcdha9Q91Y11 Cldn7-204ENSMUST00000108597 913 ntAPPRIS P1 TSL 2 BASIC17.22■□□□□ 0.35
Pcdha9Q91Y11 Pafah1b3-207ENSMUST00000155118 679 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
Pcdha9Q91Y11 Rprl3-201ENSMUST00000157400 290 ntBASIC17.22■□□□□ 0.35
Pcdha9Q91Y11 Gm26887-201ENSMUST00000181282 547 ntTSL 5 BASIC17.22■□□□□ 0.35
Pcdha9Q91Y11 Snrpf-201ENSMUST00000020203 861 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
Pcdha9Q91Y11 Alkbh2-201ENSMUST00000053657 1073 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
Pcdha9Q91Y11 Synpo-206ENSMUST00000130360 5159 ntAPPRIS ALT2 TSL 1 (best) BASIC17.22■□□□□ 0.35
Pcdha9Q91Y11 Tspoap1-202ENSMUST00000100644 7390 ntAPPRIS ALT2 TSL 5 BASIC17.22■□□□□ 0.35
Pcdha9Q91Y11 E130307A14Rik-213ENSMUST00000155482 2803 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
Pcdha9Q91Y11 Trim7-201ENSMUST00000046903 2161 ntAPPRIS P1 TSL 5 BASIC17.22■□□□□ 0.35
Pcdha9Q91Y11 Il6st-208ENSMUST00000184311 2985 ntAPPRIS P2 TSL 5 BASIC17.22■□□□□ 0.35
Pcdha9Q91Y11 Kctd6-202ENSMUST00000170111 3052 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
Pcdha9Q91Y11 Kifc3-203ENSMUST00000169748 3384 ntAPPRIS ALT2 TSL 1 (best) BASIC17.22■□□□□ 0.35
Pcdha9Q91Y11 Mier2-212ENSMUST00000172158 1400 ntTSL 5 BASIC17.21■□□□□ 0.35
Pcdha9Q91Y11 AK157302-201ENSMUST00000104942 1924 ntAPPRIS P1 BASIC17.21■□□□□ 0.35
Pcdha9Q91Y11 Tbrg4-212ENSMUST00000189268 2347 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
Pcdha9Q91Y11 Nfe2l3-201ENSMUST00000005103 2544 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
Pcdha9Q91Y11 Crtac1-201ENSMUST00000048630 2616 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
Pcdha9Q91Y11 Ell2-201ENSMUST00000001583 4382 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
Pcdha9Q91Y11 Coro2a-202ENSMUST00000107756 4154 ntAPPRIS P3 TSL 1 (best) BASIC17.21■□□□□ 0.35
Pcdha9Q91Y11 Fam83f-201ENSMUST00000023044 2988 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
Pcdha9Q91Y11 Pde8b-214ENSMUST00000172104 2493 ntAPPRIS ALT2 TSL 5 BASIC17.21■□□□□ 0.35
Pcdha9Q91Y11 Tjap1-214ENSMUST00000225413 2189 ntAPPRIS ALT2 BASIC17.21■□□□□ 0.35
Pcdha9Q91Y11 Phf7-201ENSMUST00000022459 2084 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
Pcdha9Q91Y11 Syngr3-201ENSMUST00000007236 1965 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
Pcdha9Q91Y11 Efemp2-204ENSMUST00000165485 1557 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
Pcdha9Q91Y11 Gm16272-201ENSMUST00000128218 388 ntTSL 2 BASIC17.21■□□□□ 0.35
Pcdha9Q91Y11 1110065P20Rik-204ENSMUST00000163946 762 ntTSL 2 BASIC17.21■□□□□ 0.35
Pcdha9Q91Y11 Gm29246-201ENSMUST00000189221 349 ntTSL 3 BASIC17.21■□□□□ 0.35
Pcdha9Q91Y11 Gm21362-201ENSMUST00000194272 928 ntBASIC17.21■□□□□ 0.35
Pcdha9Q91Y11 Gm4316-202ENSMUST00000212490 1115 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
Pcdha9Q91Y11 Gm35154-202ENSMUST00000217008 1093 ntTSL 5 BASIC17.21■□□□□ 0.35
Pcdha9Q91Y11 Gm7367-201ENSMUST00000057611 492 ntBASIC17.21■□□□□ 0.35
Pcdha9Q91Y11 Gm9991-201ENSMUST00000070048 1207 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
Pcdha9Q91Y11 Rab27b-202ENSMUST00000117692 2842 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
Pcdha9Q91Y11 Shh-201ENSMUST00000002708 2847 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
Pcdha9Q91Y11 Myo9b-206ENSMUST00000212935 6316 ntAPPRIS ALT2 TSL 5 BASIC17.21■□□□□ 0.35
Pcdha9Q91Y11 Tprn-201ENSMUST00000114336 2787 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
Pcdha9Q91Y11 Glra1-202ENSMUST00000102716 2390 ntAPPRIS P3 TSL 1 (best) BASIC17.21■□□□□ 0.34
Pcdha9Q91Y11 Ptpn5-201ENSMUST00000033142 3145 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.34
Pcdha9Q91Y11 Fam72a-201ENSMUST00000068613 2191 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.34
Pcdha9Q91Y11 Klf9-201ENSMUST00000036884 3263 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
Pcdha9Q91Y11 Tpm1-215ENSMUST00000113705 1759 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
Pcdha9Q91Y11 Gid8-201ENSMUST00000029090 1655 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
Pcdha9Q91Y11 Wscd1-202ENSMUST00000108510 2956 ntAPPRIS P1 TSL 5 BASIC17.2■□□□□ 0.34
Pcdha9Q91Y11 Jdp2-202ENSMUST00000171754 1559 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
Pcdha9Q91Y11 Emd-201ENSMUST00000002029 1595 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
Pcdha9Q91Y11 Ghrhr-201ENSMUST00000063578 1550 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
Pcdha9Q91Y11 Eda-202ENSMUST00000113775 5088 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
Pcdha9Q91Y11 Spock3-204ENSMUST00000119068 3201 ntAPPRIS P3 TSL 5 BASIC17.2■□□□□ 0.34
Pcdha9Q91Y11 Prex1-201ENSMUST00000036719 6533 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
Pcdha9Q91Y11 Zfp133-ps-202ENSMUST00000124788 1079 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
Pcdha9Q91Y11 Mocs1-202ENSMUST00000165390 729 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
Pcdha9Q91Y11 Sbsn-202ENSMUST00000182227 432 ntAPPRIS ALT2 TSL 5 BASIC17.2■□□□□ 0.34
Pcdha9Q91Y11 Sbsn-203ENSMUST00000182229 732 ntAPPRIS ALT2 TSL 1 (best) BASIC17.2■□□□□ 0.34
Pcdha9Q91Y11 Jagn1-202ENSMUST00000204254 1147 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
Pcdha9Q91Y11 Vegfc-203ENSMUST00000210831 555 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
Pcdha9Q91Y11 Krt10-202ENSMUST00000211768 557 ntTSL 3 BASIC17.2■□□□□ 0.34
Pcdha9Q91Y11 Rpp25l-201ENSMUST00000038434 856 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
Pcdha9Q91Y11 Lce1a1-201ENSMUST00000074142 705 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
Pcdha9Q91Y11 Agtr1a-201ENSMUST00000066412 2199 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
Pcdha9Q91Y11 Cmtm3-201ENSMUST00000034343 1616 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
Pcdha9Q91Y11 Kcnq2-204ENSMUST00000103047 2899 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
Pcdha9Q91Y11 Zbtb9-201ENSMUST00000120016 2798 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
Pcdha9Q91Y11 Pnpla2-202ENSMUST00000064151 1799 ntAPPRIS P3 TSL 1 (best) BASIC17.2■□□□□ 0.34
Pcdha9Q91Y11 Ppfibp1-201ENSMUST00000016631 4851 ntAPPRIS P3 TSL 1 (best) BASIC17.2■□□□□ 0.34
Pcdha9Q91Y11 Gpsm3-201ENSMUST00000038244 1343 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
Pcdha9Q91Y11 Kat5-201ENSMUST00000113641 2008 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
Pcdha9Q91Y11 Fbrsl1-201ENSMUST00000056124 2700 ntTSL 2 BASIC17.2■□□□□ 0.34
Pcdha9Q91Y11 Pnkp-202ENSMUST00000098478 1550 ntTSL 1 (best) BASIC17.19■□□□□ 0.34
Pcdha9Q91Y11 Inpp5e-202ENSMUST00000114090 2790 ntAPPRIS ALT2 TSL 1 (best) BASIC17.19■□□□□ 0.34
Pcdha9Q91Y11 Hpn-201ENSMUST00000039435 1743 ntTSL 1 (best) BASIC17.19■□□□□ 0.34
Pcdha9Q91Y11 Ubp1-202ENSMUST00000084885 3850 ntAPPRIS P4 TSL 5 BASIC17.19■□□□□ 0.34
Retrieved 100 of 76,532 protein–RNA pairs in 19.7 ms