Protein–RNA interactions for Protein: Q8C0D0

Trub1, Probable tRNA pseudouridine synthase 1, mousemouse

Known RBP Predictions only

Length 338 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trub1Q8C0D0 Dohh-201ENSMUST00000072751 1444 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
Trub1Q8C0D0 Zfp629-206ENSMUST00000132524 215 ntTSL 5 BASIC16.74■□□□□ 0.27
Trub1Q8C0D0 Apopt1-204ENSMUST00000163220 671 ntAPPRIS ALT2 TSL 2 BASIC16.74■□□□□ 0.27
Trub1Q8C0D0 Gm6659-201ENSMUST00000174752 547 ntBASIC16.74■□□□□ 0.27
Trub1Q8C0D0 Snhg4-201ENSMUST00000181664 1190 ntTSL 1 (best) BASIC16.74■□□□□ 0.27
Trub1Q8C0D0 Cd70-201ENSMUST00000019633 842 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
Trub1Q8C0D0 Lamtor5-202ENSMUST00000199317 743 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
Trub1Q8C0D0 1810010D01Rik-204ENSMUST00000208788 889 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
Trub1Q8C0D0 Cyp46a1-201ENSMUST00000021684 2118 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
Trub1Q8C0D0 Taar2-201ENSMUST00000079134 1020 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
Trub1Q8C0D0 Syngr3-201ENSMUST00000007236 1965 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
Trub1Q8C0D0 Lias-202ENSMUST00000122026 1668 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
Trub1Q8C0D0 Hsdl2-201ENSMUST00000030078 2611 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
Trub1Q8C0D0 Ccdc174-201ENSMUST00000037783 1752 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
Trub1Q8C0D0 Epor-201ENSMUST00000006397 1761 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
Trub1Q8C0D0 Tmtc4-204ENSMUST00000126867 2952 ntAPPRIS P1 TSL 5 BASIC16.74■□□□□ 0.27
Trub1Q8C0D0 Zswim8-201ENSMUST00000022358 6073 ntAPPRIS P2 TSL 1 (best) BASIC16.74■□□□□ 0.27
Trub1Q8C0D0 Dnah9-202ENSMUST00000108691 2671 ntTSL 1 (best) BASIC16.73■□□□□ 0.27
Trub1Q8C0D0 Phtf1-202ENSMUST00000063717 3327 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
Trub1Q8C0D0 Oas1g-201ENSMUST00000086368 1977 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
Trub1Q8C0D0 Serpine2-201ENSMUST00000027467 2210 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
Trub1Q8C0D0 Cpd-201ENSMUST00000021201 7946 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
Trub1Q8C0D0 Zfp385b-202ENSMUST00000111829 2073 ntTSL 5 BASIC16.73■□□□□ 0.27
Trub1Q8C0D0 Gm23634-201ENSMUST00000175071 91 ntBASIC16.73■□□□□ 0.27
Trub1Q8C0D0 Gm20033-201ENSMUST00000180470 572 ntTSL 3 BASIC16.73■□□□□ 0.27
Trub1Q8C0D0 Flt3l-206ENSMUST00000210197 834 ntAPPRIS ALT2 TSL 5 BASIC16.73■□□□□ 0.27
Trub1Q8C0D0 Psmd8-201ENSMUST00000059642 1540 ntAPPRIS P2 TSL 1 (best) BASIC16.73■□□□□ 0.27
Trub1Q8C0D0 Rd3-203ENSMUST00000181512 1760 ntTSL 5 BASIC16.73■□□□□ 0.27
Trub1Q8C0D0 Gm45723-201ENSMUST00000212135 1783 ntTSL 5 BASIC16.73■□□□□ 0.27
Trub1Q8C0D0 Myo9b-206ENSMUST00000212935 6316 ntAPPRIS ALT2 TSL 5 BASIC16.73■□□□□ 0.27
Trub1Q8C0D0 Exoc8-201ENSMUST00000098312 4598 ntAPPRIS P1 BASIC16.73■□□□□ 0.27
Trub1Q8C0D0 Taf6l-206ENSMUST00000176610 2203 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
Trub1Q8C0D0 Camk2n1-201ENSMUST00000050918 4444 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
Trub1Q8C0D0 Alox12-202ENSMUST00000108574 2314 ntTSL 1 (best) BASIC16.73■□□□□ 0.27
Trub1Q8C0D0 Dancr-204ENSMUST00000132389 2347 ntBASIC16.73■□□□□ 0.27
Trub1Q8C0D0 Nipa2-201ENSMUST00000032635 3197 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
Trub1Q8C0D0 Ehmt2-204ENSMUST00000114033 3882 ntAPPRIS ALT2 TSL 1 (best) BASIC16.72■□□□□ 0.27
Trub1Q8C0D0 Ptpro-203ENSMUST00000167679 5096 ntAPPRIS ALT2 TSL 1 (best) BASIC16.72■□□□□ 0.27
Trub1Q8C0D0 Tmem117-201ENSMUST00000080141 2781 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
Trub1Q8C0D0 Neurl1a-202ENSMUST00000111808 4157 ntAPPRIS P3 TSL 1 (best) BASIC16.72■□□□□ 0.27
Trub1Q8C0D0 Mfsd10-203ENSMUST00000114331 1754 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
Trub1Q8C0D0 Pde8b-208ENSMUST00000162292 4235 ntAPPRIS P2 TSL 1 (best) BASIC16.72■□□□□ 0.27
Trub1Q8C0D0 Chga-201ENSMUST00000021610 1883 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
Trub1Q8C0D0 Zbtb48-201ENSMUST00000066715 2218 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
Trub1Q8C0D0 Prex1-201ENSMUST00000036719 6533 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
Trub1Q8C0D0 Pgap2-203ENSMUST00000120119 1979 ntTSL 1 (best) BASIC16.72■□□□□ 0.27
Trub1Q8C0D0 Naa10-204ENSMUST00000114389 1031 ntAPPRIS ALT2 TSL 1 (best) BASIC16.72■□□□□ 0.27
Trub1Q8C0D0 Hotairm1-202ENSMUST00000132559 713 ntTSL 1 (best) BASIC16.72■□□□□ 0.27
Trub1Q8C0D0 Ankrd39-202ENSMUST00000194894 664 ntTSL 1 (best) BASIC16.72■□□□□ 0.27
Trub1Q8C0D0 Ppp1r27-201ENSMUST00000026121 771 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
Trub1Q8C0D0 Tesc-201ENSMUST00000031304 1031 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
Trub1Q8C0D0 Grcc10-201ENSMUST00000004389 863 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
Trub1Q8C0D0 Rpl21-202ENSMUST00000075453 899 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
Trub1Q8C0D0 Ppm1d-201ENSMUST00000020835 2899 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
Trub1Q8C0D0 Jmy-201ENSMUST00000065537 8776 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
Trub1Q8C0D0 Ggnbp2-203ENSMUST00000108081 3034 ntAPPRIS P2 TSL 5 BASIC16.72■□□□□ 0.27
Trub1Q8C0D0 Mxd4-201ENSMUST00000042701 3872 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
Trub1Q8C0D0 Fnbp1-204ENSMUST00000100208 1859 ntTSL 5 BASIC16.71■□□□□ 0.27
Trub1Q8C0D0 Tm6sf2-202ENSMUST00000110160 1446 ntAPPRIS ALT1 TSL 1 (best) BASIC16.71■□□□□ 0.27
Trub1Q8C0D0 Sh3glb1-205ENSMUST00000199854 1416 ntTSL 5 BASIC16.71■□□□□ 0.27
Trub1Q8C0D0 Trim54-202ENSMUST00000202769 1408 ntAPPRIS ALT1 TSL 5 BASIC16.71■□□□□ 0.27
Trub1Q8C0D0 Cnbd2-201ENSMUST00000037096 2277 ntAPPRIS P2 TSL 1 (best) BASIC16.71■□□□□ 0.27
Trub1Q8C0D0 Dmpk-203ENSMUST00000108474 2591 ntAPPRIS ALT2 TSL 1 (best) BASIC16.71■□□□□ 0.27
Trub1Q8C0D0 Gm19430-201ENSMUST00000193847 2137 ntBASIC16.71■□□□□ 0.27
Trub1Q8C0D0 BC049762-201ENSMUST00000054226 760 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
Trub1Q8C0D0 Nhlrc4-201ENSMUST00000085027 2142 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
Trub1Q8C0D0 Ppp2r5e-201ENSMUST00000021447 4810 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
Trub1Q8C0D0 Itpripl2-201ENSMUST00000178344 6865 ntAPPRIS P1 BASIC16.71■□□□□ 0.27
Trub1Q8C0D0 Xpo6-213ENSMUST00000168189 4552 ntAPPRIS ALT1 TSL 1 (best) BASIC16.71■□□□□ 0.27
Trub1Q8C0D0 Tbc1d19-201ENSMUST00000037337 2273 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
Trub1Q8C0D0 Sh2b1-201ENSMUST00000032978 3393 ntAPPRIS P3 TSL 1 (best) BASIC16.71■□□□□ 0.26
Trub1Q8C0D0 Renbp-202ENSMUST00000116578 1418 ntAPPRIS P2 TSL 1 (best) BASIC16.7■□□□□ 0.26
Trub1Q8C0D0 Prss54-201ENSMUST00000052690 1438 ntAPPRIS ALT2 TSL 1 (best) BASIC16.7■□□□□ 0.26
Trub1Q8C0D0 Sucla2-203ENSMUST00000160507 2229 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
Trub1Q8C0D0 Pigs-201ENSMUST00000048073 2501 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
Trub1Q8C0D0 Trim28-201ENSMUST00000005705 3245 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
Trub1Q8C0D0 Col27a1-201ENSMUST00000036300 7612 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
Trub1Q8C0D0 Eda-202ENSMUST00000113775 5088 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
Trub1Q8C0D0 Lca5l-202ENSMUST00000113804 3162 ntAPPRIS ALT2 TSL 1 (best) BASIC16.7■□□□□ 0.26
Trub1Q8C0D0 Ckap4-201ENSMUST00000053871 3089 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
Trub1Q8C0D0 Txnrd2-215ENSMUST00000206151 2874 ntAPPRIS P2 TSL 5 BASIC16.7■□□□□ 0.26
Trub1Q8C0D0 Vmn1r17-204ENSMUST00000228294 2084 ntAPPRIS ALT2 BASIC16.7■□□□□ 0.26
Trub1Q8C0D0 Noc4l-201ENSMUST00000042147 2075 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
Trub1Q8C0D0 AC132265.1-201ENSMUST00000219233 1665 ntBASIC16.7■□□□□ 0.26
Trub1Q8C0D0 Gm6858-201ENSMUST00000208582 1468 ntBASIC16.7■□□□□ 0.26
Trub1Q8C0D0 Gm11950-201ENSMUST00000121615 838 ntBASIC16.7■□□□□ 0.26
Trub1Q8C0D0 Oip5-202ENSMUST00000123818 1082 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
Trub1Q8C0D0 Gm6728-201ENSMUST00000178117 1065 ntBASIC16.7■□□□□ 0.26
Trub1Q8C0D0 Gm29518-201ENSMUST00000190858 372 ntBASIC16.7■□□□□ 0.26
Trub1Q8C0D0 AC125350.1-201ENSMUST00000225115 903 ntBASIC16.7■□□□□ 0.26
Trub1Q8C0D0 Odf3b-201ENSMUST00000049968 1040 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
Trub1Q8C0D0 Golga7b-201ENSMUST00000087123 2823 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
Trub1Q8C0D0 Lrp8-201ENSMUST00000030356 4555 ntAPPRIS P5 TSL 5 BASIC16.7■□□□□ 0.26
Trub1Q8C0D0 Men1-204ENSMUST00000113500 2742 ntAPPRIS P2 TSL 5 BASIC16.7■□□□□ 0.26
Trub1Q8C0D0 Rgl3-201ENSMUST00000045726 2543 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
Trub1Q8C0D0 Rgs9-201ENSMUST00000020920 2434 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
Trub1Q8C0D0 Arl4c-202ENSMUST00000159814 3997 ntAPPRIS P1 BASIC16.7■□□□□ 0.26
Trub1Q8C0D0 Rabggta-201ENSMUST00000062861 2338 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
Trub1Q8C0D0 Dgkz-201ENSMUST00000028667 3584 ntAPPRIS P2 TSL 1 (best) BASIC16.7■□□□□ 0.26
Trub1Q8C0D0 Atp8b1-201ENSMUST00000025482 6440 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
Retrieved 100 of 76,532 protein–RNA pairs in 33.7 ms