Protein–RNA interactions for Protein: Q6PDX6

Rnf220, E3 ubiquitin-protein ligase Rnf220, mousemouse

Predictions only

Length 566 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Rnf220Q6PDX6 Igf2-202ENSMUST00000097936 2503 ntAPPRIS P1 TSL 5 BASIC15.42■□□□□ 0.06
Rnf220Q6PDX6 Snx9-201ENSMUST00000002436 2411 ntAPPRIS P1 TSL 1 (best) BASIC15.42■□□□□ 0.06
Rnf220Q6PDX6 Cdkn2aip-202ENSMUST00000212175 3393 ntAPPRIS P2 TSL 1 (best) BASIC15.42■□□□□ 0.06
Rnf220Q6PDX6 Pard3-202ENSMUST00000079777 3394 ntTSL 5 BASIC15.42■□□□□ 0.06
Rnf220Q6PDX6 Gm19531-201ENSMUST00000216737 1377 ntTSL 1 (best) BASIC15.42■□□□□ 0.06
Rnf220Q6PDX6 Gpn2-201ENSMUST00000030661 1367 ntAPPRIS P1 TSL 1 (best) BASIC15.42■□□□□ 0.06
Rnf220Q6PDX6 Sbk2-202ENSMUST00000182214 2236 ntAPPRIS P1 TSL 5 BASIC15.42■□□□□ 0.06
Rnf220Q6PDX6 1700007L15Rik-201ENSMUST00000180923 737 ntTSL 1 (best) BASIC15.42■□□□□ 0.06
Rnf220Q6PDX6 Gm29241-201ENSMUST00000189260 1096 ntBASIC15.42■□□□□ 0.06
Rnf220Q6PDX6 BC107364-201ENSMUST00000093126 1159 ntAPPRIS P4 TSL 1 (best) BASIC15.42■□□□□ 0.06
Rnf220Q6PDX6 Ubxn1-201ENSMUST00000096255 1041 ntAPPRIS P1 TSL 1 (best) BASIC15.42■□□□□ 0.06
Rnf220Q6PDX6 BC107364-202ENSMUST00000098841 1065 ntAPPRIS ALT2 TSL 1 (best) BASIC15.42■□□□□ 0.06
Rnf220Q6PDX6 Cdkl3-209ENSMUST00000120374 2770 ntAPPRIS ALT2 TSL 5 BASIC15.42■□□□□ 0.06
Rnf220Q6PDX6 Cdkl3-201ENSMUST00000063303 2765 ntAPPRIS P3 TSL 1 (best) BASIC15.42■□□□□ 0.06
Rnf220Q6PDX6 Sfmbt1-201ENSMUST00000054230 7837 ntAPPRIS P1 TSL 5 BASIC15.42■□□□□ 0.06
Rnf220Q6PDX6 Casp8-201ENSMUST00000027189 2585 ntAPPRIS P3 TSL 1 (best) BASIC15.42■□□□□ 0.06
Rnf220Q6PDX6 Patz1-201ENSMUST00000057089 3118 ntTSL 1 (best) BASIC15.42■□□□□ 0.06
Rnf220Q6PDX6 Nlk-201ENSMUST00000142739 4444 ntAPPRIS P1 TSL 1 (best) BASIC15.42■□□□□ 0.06
Rnf220Q6PDX6 Mcm9-201ENSMUST00000075540 4882 ntAPPRIS P1 TSL 2 BASIC15.42■□□□□ 0.06
Rnf220Q6PDX6 Ttll11-201ENSMUST00000028248 3176 ntAPPRIS P2 TSL 1 (best) BASIC15.42■□□□□ 0.06
Rnf220Q6PDX6 2700080J24Rik-201ENSMUST00000205314 1662 ntBASIC15.41■□□□□ 0.06
Rnf220Q6PDX6 Anxa4-201ENSMUST00000001187 2002 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
Rnf220Q6PDX6 Klf15-202ENSMUST00000113530 2374 ntAPPRIS P1 TSL 5 BASIC15.41■□□□□ 0.06
Rnf220Q6PDX6 Col2a1-201ENSMUST00000023123 5104 ntTSL 1 (best) BASIC15.41■□□□□ 0.06
Rnf220Q6PDX6 Mocs1-201ENSMUST00000024797 2646 ntTSL 5 BASIC15.41■□□□□ 0.06
Rnf220Q6PDX6 Hectd3-201ENSMUST00000050067 4583 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
Rnf220Q6PDX6 Ints3-203ENSMUST00000196530 3778 ntAPPRIS ALT2 TSL 1 (best) BASIC15.41■□□□□ 0.06
Rnf220Q6PDX6 Chtop-206ENSMUST00000107344 2972 ntTSL 1 (best) BASIC15.41■□□□□ 0.06
Rnf220Q6PDX6 Paqr3-201ENSMUST00000069453 1375 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
Rnf220Q6PDX6 Shroom1-204ENSMUST00000109013 3312 ntAPPRIS P3 TSL 1 (best) BASIC15.41■□□□□ 0.06
Rnf220Q6PDX6 Ranbp3-201ENSMUST00000002445 2511 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
Rnf220Q6PDX6 Fxyd3-205ENSMUST00000167369 2894 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
Rnf220Q6PDX6 Cdyl2-201ENSMUST00000109102 2411 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
Rnf220Q6PDX6 Gm16425-201ENSMUST00000118143 3130 ntBASIC15.41■□□□□ 0.06
Rnf220Q6PDX6 Gm13401-201ENSMUST00000117074 291 ntBASIC15.41■□□□□ 0.06
Rnf220Q6PDX6 Gm11643-201ENSMUST00000119578 864 ntBASIC15.41■□□□□ 0.06
Rnf220Q6PDX6 Gm11527-201ENSMUST00000153795 596 ntTSL 2 BASIC15.41■□□□□ 0.06
Rnf220Q6PDX6 Gm37179-201ENSMUST00000194862 823 ntBASIC15.41■□□□□ 0.06
Rnf220Q6PDX6 Gm4968-201ENSMUST00000071458 858 ntBASIC15.41■□□□□ 0.06
Rnf220Q6PDX6 Rnf111-201ENSMUST00000034739 4880 ntAPPRIS P2 TSL 1 (best) BASIC15.41■□□□□ 0.06
Rnf220Q6PDX6 Rusc1-202ENSMUST00000090929 3706 ntAPPRIS P4 TSL 1 (best) BASIC15.41■□□□□ 0.06
Rnf220Q6PDX6 Tle1-202ENSMUST00000072695 3644 ntAPPRIS P2 TSL 1 (best) BASIC15.41■□□□□ 0.06
Rnf220Q6PDX6 Mpped1-201ENSMUST00000046168 3265 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
Rnf220Q6PDX6 Sec14l1-203ENSMUST00000103026 2589 ntAPPRIS ALT2 TSL 5 BASIC15.41■□□□□ 0.06
Rnf220Q6PDX6 Hoxaas3-202ENSMUST00000136806 2207 ntTSL 1 (best) BASIC15.41■□□□□ 0.06
Rnf220Q6PDX6 Cxcl12-202ENSMUST00000112866 1878 ntAPPRIS ALT1 TSL 1 (best) BASIC15.41■□□□□ 0.06
Rnf220Q6PDX6 Muc3a-201ENSMUST00000179412 1881 ntAPPRIS ALT2 TSL 1 (best) BASIC15.41■□□□□ 0.06
Rnf220Q6PDX6 Mrc2-202ENSMUST00000100335 5795 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
Rnf220Q6PDX6 Pou3f2-201ENSMUST00000178174 5587 ntAPPRIS P1 BASIC15.41■□□□□ 0.06
Rnf220Q6PDX6 Gata2-201ENSMUST00000015197 3571 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
Rnf220Q6PDX6 Fam160b1-201ENSMUST00000036407 5630 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
Rnf220Q6PDX6 Kif21a-204ENSMUST00000109287 6124 ntAPPRIS ALT2 TSL 1 (best) BASIC15.41■□□□□ 0.06
Rnf220Q6PDX6 Kif21a-205ENSMUST00000109288 6142 ntAPPRIS P3 TSL 1 (best) BASIC15.41■□□□□ 0.06
Rnf220Q6PDX6 Espn-206ENSMUST00000103196 1323 ntTSL 5 BASIC15.41■□□□□ 0.06
Rnf220Q6PDX6 Rundc3a-202ENSMUST00000107102 1837 ntAPPRIS ALT2 TSL 5 BASIC15.4■□□□□ 0.06
Rnf220Q6PDX6 Gatad2a-203ENSMUST00000177851 5007 ntAPPRIS ALT2 TSL 5 BASIC15.4■□□□□ 0.06
Rnf220Q6PDX6 Nabp1-201ENSMUST00000027279 2838 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
Rnf220Q6PDX6 Lat2-202ENSMUST00000077636 1717 ntTSL 1 (best) BASIC15.4■□□□□ 0.06
Rnf220Q6PDX6 Galnt13-203ENSMUST00000112635 7531 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
Rnf220Q6PDX6 Rint1-205ENSMUST00000120869 1886 ntTSL 1 (best) BASIC15.4■□□□□ 0.06
Rnf220Q6PDX6 Sf1-203ENSMUST00000113488 2282 ntTSL 5 BASIC15.4■□□□□ 0.06
Rnf220Q6PDX6 Nisch-221ENSMUST00000171735 1763 ntTSL 1 (best) BASIC15.4■□□□□ 0.06
Rnf220Q6PDX6 Larp1b-206ENSMUST00000191872 1505 ntAPPRIS ALT2 TSL 1 (best) BASIC15.4■□□□□ 0.06
Rnf220Q6PDX6 Arl4aos-201ENSMUST00000135883 748 ntTSL 1 (best) BASIC15.4■□□□□ 0.06
Rnf220Q6PDX6 Gm5408-201ENSMUST00000197998 747 ntBASIC15.4■□□□□ 0.06
Rnf220Q6PDX6 Tpsb2-201ENSMUST00000069616 1081 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
Rnf220Q6PDX6 Olfr322-201ENSMUST00000072030 984 ntAPPRIS P1 BASIC15.4■□□□□ 0.06
Rnf220Q6PDX6 Chrac1-201ENSMUST00000089765 871 ntAPPRIS P2 TSL 1 (best) BASIC15.4■□□□□ 0.06
Rnf220Q6PDX6 Zfp553-202ENSMUST00000106312 3342 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
Rnf220Q6PDX6 Mesp2-201ENSMUST00000107394 1944 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
Rnf220Q6PDX6 Rpf1-201ENSMUST00000029838 1661 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
Rnf220Q6PDX6 Trabd-206ENSMUST00000169891 1422 ntAPPRIS ALT2 TSL 1 (best) BASIC15.4■□□□□ 0.06
Rnf220Q6PDX6 Ace-201ENSMUST00000001963 4906 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
Rnf220Q6PDX6 Nkain2-203ENSMUST00000191234 3760 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
Rnf220Q6PDX6 Spryd3-203ENSMUST00000154032 2456 ntAPPRIS P1 TSL 5 BASIC15.4■□□□□ 0.06
Rnf220Q6PDX6 Kctd14-205ENSMUST00000206279 2203 ntAPPRIS ALT2 TSL 2 BASIC15.4■□□□□ 0.06
Rnf220Q6PDX6 Slc35g2-201ENSMUST00000093792 1590 ntAPPRIS P1 TSL 2 BASIC15.4■□□□□ 0.06
Rnf220Q6PDX6 Kdr-201ENSMUST00000113516 5924 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
Rnf220Q6PDX6 Fbxl21-201ENSMUST00000045428 1965 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
Rnf220Q6PDX6 Gm10605-202ENSMUST00000183019 3198 ntBASIC15.4■□□□□ 0.06
Rnf220Q6PDX6 Aldh3a1-201ENSMUST00000019246 1729 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
Rnf220Q6PDX6 Sirt6-201ENSMUST00000042923 1891 ntAPPRIS P3 TSL 1 (best) BASIC15.4■□□□□ 0.06
Rnf220Q6PDX6 Zfp648-201ENSMUST00000086195 1892 ntAPPRIS P1 TSL 3 BASIC15.4■□□□□ 0.06
Rnf220Q6PDX6 AI314180-201ENSMUST00000055822 1478 ntTSL 1 (best) BASIC15.4■□□□□ 0.06
Rnf220Q6PDX6 Supt5-208ENSMUST00000209141 3755 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
Rnf220Q6PDX6 Tap1-206ENSMUST00000170086 2953 ntAPPRIS P3 TSL 1 (best) BASIC15.39■□□□□ 0.05
Rnf220Q6PDX6 Syt6-202ENSMUST00000117221 4394 ntTSL 1 (best) BASIC15.39■□□□□ 0.05
Rnf220Q6PDX6 Sec14l1-201ENSMUST00000021177 2866 ntAPPRIS P3 TSL 1 (best) BASIC15.39■□□□□ 0.05
Rnf220Q6PDX6 Sybu-209ENSMUST00000228639 4113 ntBASIC15.39■□□□□ 0.05
Rnf220Q6PDX6 Ubn1-201ENSMUST00000052449 6455 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
Rnf220Q6PDX6 Atp6v1c1-201ENSMUST00000022904 2071 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
Rnf220Q6PDX6 Tmem116-204ENSMUST00000111795 2221 ntAPPRIS ALT2 TSL 1 (best) BASIC15.39■□□□□ 0.05
Rnf220Q6PDX6 Sp8-201ENSMUST00000063918 4478 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
Rnf220Q6PDX6 Siglece-201ENSMUST00000032667 1849 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
Rnf220Q6PDX6 Grb2-203ENSMUST00000106497 2683 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
Rnf220Q6PDX6 Gm2788-204ENSMUST00000209288 1966 ntTSL 5 BASIC15.39■□□□□ 0.05
Rnf220Q6PDX6 Gm15648-201ENSMUST00000149681 778 ntTSL 5 BASIC15.39■□□□□ 0.05
Rnf220Q6PDX6 Gm2559-201ENSMUST00000201323 363 ntBASIC15.39■□□□□ 0.05
Rnf220Q6PDX6 Gm44672-201ENSMUST00000206944 1098 ntBASIC15.39■□□□□ 0.05
Rnf220Q6PDX6 Gm10138-203ENSMUST00000206952 366 ntBASIC15.39■□□□□ 0.05
Retrieved 100 of 76,532 protein–RNA pairs in 25.1 ms