Protein–RNA interactions for Protein: Q3ULL6

Upf3b, UPF3 regulator of nonsense transcripts homolog B (yeast), mousemouse

Predictions only

Length 472 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Upf3bQ3ULL6 Dtx2-204ENSMUST00000111145 2493 ntAPPRIS ALT2 TSL 1 (best) BASIC17.35■□□□□ 0.37
Upf3bQ3ULL6 Gm16075-201ENSMUST00000135873 361 ntTSL 3 BASIC17.35■□□□□ 0.37
Upf3bQ3ULL6 Gm15890-201ENSMUST00000161024 770 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
Upf3bQ3ULL6 Gm27742-201ENSMUST00000184667 60 ntBASIC17.35■□□□□ 0.37
Upf3bQ3ULL6 Tesc-201ENSMUST00000031304 1031 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
Upf3bQ3ULL6 Dcps-201ENSMUST00000034539 1274 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
Upf3bQ3ULL6 Cebpzos-201ENSMUST00000063817 753 ntAPPRIS P1 TSL 2 BASIC17.35■□□□□ 0.37
Upf3bQ3ULL6 Gfra4-202ENSMUST00000066958 783 ntAPPRIS ALT2 TSL 1 (best) BASIC17.35■□□□□ 0.37
Upf3bQ3ULL6 Shh-201ENSMUST00000002708 2847 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
Upf3bQ3ULL6 Ikbke-204ENSMUST00000161764 2867 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
Upf3bQ3ULL6 Kcna6-204ENSMUST00000185333 5836 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
Upf3bQ3ULL6 Ankrd13b-201ENSMUST00000037593 3105 ntAPPRIS ALT2 TSL 1 (best) BASIC17.35■□□□□ 0.37
Upf3bQ3ULL6 Hnrnpa1-202ENSMUST00000087351 1759 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
Upf3bQ3ULL6 Ptbp2-213ENSMUST00000200097 3777 ntAPPRIS ALT1 TSL 1 (best) BASIC17.35■□□□□ 0.37
Upf3bQ3ULL6 A230103J11Rik-202ENSMUST00000156084 2086 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
Upf3bQ3ULL6 Sbk2-202ENSMUST00000182214 2236 ntAPPRIS P1 TSL 5 BASIC17.35■□□□□ 0.37
Upf3bQ3ULL6 Il3ra-203ENSMUST00000224163 2315 ntAPPRIS P2 BASIC17.35■□□□□ 0.37
Upf3bQ3ULL6 Zfp281-201ENSMUST00000047734 4933 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
Upf3bQ3ULL6 Carmil2-201ENSMUST00000062574 2526 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
Upf3bQ3ULL6 9530018F02Rik-201ENSMUST00000219513 2599 ntBASIC17.35■□□□□ 0.37
Upf3bQ3ULL6 Irak1-201ENSMUST00000033769 2890 ntAPPRIS ALT2 TSL 1 (best) BASIC17.34■□□□□ 0.37
Upf3bQ3ULL6 Trim8-201ENSMUST00000026008 3230 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
Upf3bQ3ULL6 Enah-202ENSMUST00000111024 3572 ntAPPRIS ALT2 TSL 5 BASIC17.34■□□□□ 0.37
Upf3bQ3ULL6 Stxbp3-201ENSMUST00000102621 2419 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
Upf3bQ3ULL6 Mettl21a-202ENSMUST00000114079 2030 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
Upf3bQ3ULL6 Gm14859-201ENSMUST00000117752 357 ntBASIC17.34■□□□□ 0.37
Upf3bQ3ULL6 Cul4a-202ENSMUST00000121426 1044 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
Upf3bQ3ULL6 Pde8b-214ENSMUST00000172104 2493 ntAPPRIS ALT2 TSL 5 BASIC17.34■□□□□ 0.37
Upf3bQ3ULL6 E2f7-205ENSMUST00000173634 827 ntTSL 2 BASIC17.34■□□□□ 0.37
Upf3bQ3ULL6 2810013P06Rik-201ENSMUST00000186531 2137 ntBASIC17.34■□□□□ 0.37
Upf3bQ3ULL6 Hebp2-203ENSMUST00000214548 2083 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
Upf3bQ3ULL6 Ak6-201ENSMUST00000022135 1298 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
Upf3bQ3ULL6 Mrpl36-202ENSMUST00000221730 717 ntAPPRIS P1 TSL 3 BASIC17.34■□□□□ 0.37
Upf3bQ3ULL6 Wrb-201ENSMUST00000023913 2495 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
Upf3bQ3ULL6 Ndufb8-201ENSMUST00000026222 680 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
Upf3bQ3ULL6 P2rx4-201ENSMUST00000031429 2702 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
Upf3bQ3ULL6 Klhdc4-201ENSMUST00000045884 2078 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
Upf3bQ3ULL6 Slc1a6-201ENSMUST00000005490 2029 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
Upf3bQ3ULL6 Hist1h1a-201ENSMUST00000055770 741 ntAPPRIS P1 BASIC17.34■□□□□ 0.37
Upf3bQ3ULL6 Hist1h2af-201ENSMUST00000073261 399 ntAPPRIS P1 BASIC17.34■□□□□ 0.37
Upf3bQ3ULL6 Phf1-201ENSMUST00000073724 2429 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
Upf3bQ3ULL6 Rnpep-202ENSMUST00000077340 2288 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
Upf3bQ3ULL6 Simc1-202ENSMUST00000121401 4819 ntAPPRIS P2 TSL 5 BASIC17.34■□□□□ 0.37
Upf3bQ3ULL6 Ube2j2-213ENSMUST00000166489 3339 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
Upf3bQ3ULL6 Map6-207ENSMUST00000208924 2906 ntAPPRIS ALT2 TSL 1 (best) BASIC17.34■□□□□ 0.37
Upf3bQ3ULL6 Pnpt1-201ENSMUST00000020756 2707 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
Upf3bQ3ULL6 Rnf121-202ENSMUST00000096639 2249 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.37
Upf3bQ3ULL6 AC115863.1-201ENSMUST00000214815 1813 ntBASIC17.33■□□□□ 0.37
Upf3bQ3ULL6 St8sia1-201ENSMUST00000032421 8991 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.37
Upf3bQ3ULL6 Mfsd10-203ENSMUST00000114331 1754 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.37
Upf3bQ3ULL6 Slc38a10-203ENSMUST00000076697 1672 ntAPPRIS ALT2 TSL 1 (best) BASIC17.33■□□□□ 0.37
Upf3bQ3ULL6 Wapl-201ENSMUST00000048263 6351 ntAPPRIS P3 TSL 1 (best) BASIC17.33■□□□□ 0.37
Upf3bQ3ULL6 Fam219b-202ENSMUST00000114200 3017 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.37
Upf3bQ3ULL6 Gm10435-202ENSMUST00000162526 2878 ntTSL 5 BASIC17.33■□□□□ 0.36
Upf3bQ3ULL6 Lmo4-202ENSMUST00000121112 1447 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
Upf3bQ3ULL6 Gm32996-201ENSMUST00000199828 1447 ntBASIC17.33■□□□□ 0.36
Upf3bQ3ULL6 Dohh-201ENSMUST00000072751 1444 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
Upf3bQ3ULL6 Crem-228ENSMUST00000150235 2662 ntAPPRIS P2 TSL 5 BASIC17.33■□□□□ 0.36
Upf3bQ3ULL6 Gm14464-201ENSMUST00000119658 1254 ntBASIC17.33■□□□□ 0.36
Upf3bQ3ULL6 Psme2-208ENSMUST00000161807 962 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
Upf3bQ3ULL6 Rnf13-209ENSMUST00000199041 1062 ntTSL 1 (best) BASIC17.33■□□□□ 0.36
Upf3bQ3ULL6 Snhg10-202ENSMUST00000222812 527 ntTSL 1 (best) BASIC17.33■□□□□ 0.36
Upf3bQ3ULL6 Npcd-201ENSMUST00000023060 1162 ntAPPRIS ALT2 TSL 1 (best) BASIC17.33■□□□□ 0.36
Upf3bQ3ULL6 Slc11a1-201ENSMUST00000027368 2315 ntAPPRIS P2 TSL 1 (best) BASIC17.33■□□□□ 0.36
Upf3bQ3ULL6 Hap1-201ENSMUST00000103124 2120 ntAPPRIS P3 TSL 1 (best) BASIC17.33■□□□□ 0.36
Upf3bQ3ULL6 Was-201ENSMUST00000033505 2114 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
Upf3bQ3ULL6 Gm13446-201ENSMUST00000124555 2033 ntTSL 1 (best) BASIC17.33■□□□□ 0.36
Upf3bQ3ULL6 Kat2a-202ENSMUST00000103118 3046 ntAPPRIS P4 TSL 1 (best) BASIC17.33■□□□□ 0.36
Upf3bQ3ULL6 Adss-201ENSMUST00000016105 2771 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
Upf3bQ3ULL6 Dgkz-201ENSMUST00000028667 3584 ntAPPRIS P2 TSL 1 (best) BASIC17.33■□□□□ 0.36
Upf3bQ3ULL6 Jade2-202ENSMUST00000109090 6230 ntAPPRIS ALT2 TSL 1 (best) BASIC17.33■□□□□ 0.36
Upf3bQ3ULL6 Irf7-202ENSMUST00000097952 1764 ntAPPRIS ALT2 TSL 1 (best) BASIC17.33■□□□□ 0.36
Upf3bQ3ULL6 Uts2r-201ENSMUST00000039044 1703 ntAPPRIS P1 BASIC17.33■□□□□ 0.36
Upf3bQ3ULL6 BC030336-201ENSMUST00000060175 4831 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
Upf3bQ3ULL6 Aaed1-202ENSMUST00000220895 2858 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
Upf3bQ3ULL6 Klhl33-202ENSMUST00000170855 1422 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
Upf3bQ3ULL6 Ap1s1-201ENSMUST00000111080 1353 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
Upf3bQ3ULL6 2810468N07Rik-201ENSMUST00000163493 1349 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
Upf3bQ3ULL6 Dnajc2-204ENSMUST00000115195 1994 ntTSL 5 BASIC17.32■□□□□ 0.36
Upf3bQ3ULL6 Rasip1-201ENSMUST00000057927 3202 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
Upf3bQ3ULL6 Cdkn1a-201ENSMUST00000023829 1910 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
Upf3bQ3ULL6 Mdfi-203ENSMUST00000113280 1281 ntTSL 5 BASIC17.32■□□□□ 0.36
Upf3bQ3ULL6 Gm16181-201ENSMUST00000118793 567 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
Upf3bQ3ULL6 Oip5-202ENSMUST00000123818 1082 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
Upf3bQ3ULL6 Ramp2-204ENSMUST00000129680 1178 ntAPPRIS P2 TSL 1 (best) BASIC17.32■□□□□ 0.36
Upf3bQ3ULL6 Gas5-203ENSMUST00000159119 665 ntTSL 5 BASIC17.32■□□□□ 0.36
Upf3bQ3ULL6 Aicda-202ENSMUST00000160685 1292 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
Upf3bQ3ULL6 Plbd2-201ENSMUST00000031597 4208 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
Upf3bQ3ULL6 Mir22hg-202ENSMUST00000149940 1752 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
Upf3bQ3ULL6 Adgrl1-201ENSMUST00000045393 5643 ntAPPRIS P1 TSL 5 BASIC17.32■□□□□ 0.36
Upf3bQ3ULL6 Urgcp-206ENSMUST00000170116 5528 ntAPPRIS ALT2 TSL 5 BASIC17.32■□□□□ 0.36
Upf3bQ3ULL6 Homer2-206ENSMUST00000207983 1634 ntAPPRIS P3 TSL 1 (best) BASIC17.32■□□□□ 0.36
Upf3bQ3ULL6 Tfap2b-202ENSMUST00000064976 1946 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
Upf3bQ3ULL6 Gm1043-204ENSMUST00000207866 4296 ntAPPRIS P1 TSL 5 BASIC17.31■□□□□ 0.36
Upf3bQ3ULL6 Gata6-201ENSMUST00000047762 3194 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
Upf3bQ3ULL6 Olfr129-201ENSMUST00000122318 993 ntBASIC17.31■□□□□ 0.36
Upf3bQ3ULL6 Paox-202ENSMUST00000097967 1024 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
Upf3bQ3ULL6 Mvk-201ENSMUST00000043760 1660 ntAPPRIS P3 TSL 1 (best) BASIC17.31■□□□□ 0.36
Upf3bQ3ULL6 Bcr-201ENSMUST00000164107 6839 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
Upf3bQ3ULL6 Gm9889-202ENSMUST00000206983 1577 ntBASIC17.31■□□□□ 0.36
Retrieved 100 of 76,532 protein–RNA pairs in 32.4 ms