Protein–RNA interactions for Protein: Q3U1J4

Ddb1, DNA damage-binding protein 1, mousemouse

Known RBP Predictions only

Length 1,140 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ddb1Q3U1J4 Plekhb1-202ENSMUST00000107043 931 ntTSL 2 BASIC20.52■□□□□ 0.88
Ddb1Q3U1J4 Gm15358-201ENSMUST00000119249 520 ntBASIC20.52■□□□□ 0.88
Ddb1Q3U1J4 Mir7023-201ENSMUST00000185093 64 ntBASIC20.52■□□□□ 0.88
Ddb1Q3U1J4 Tma7-203ENSMUST00000192801 386 ntTSL 3 BASIC20.52■□□□□ 0.88
Ddb1Q3U1J4 4930448I06Rik-201ENSMUST00000194002 546 ntTSL 1 (best) BASIC20.52■□□□□ 0.88
Ddb1Q3U1J4 Gm45612-201ENSMUST00000211320 160 ntBASIC20.52■□□□□ 0.88
Ddb1Q3U1J4 Pecr-201ENSMUST00000027381 1186 ntAPPRIS P2 TSL 1 (best) BASIC20.52■□□□□ 0.88
Ddb1Q3U1J4 Gm9789-201ENSMUST00000062524 397 ntAPPRIS P1 BASIC20.52■□□□□ 0.88
Ddb1Q3U1J4 Zfyve19-201ENSMUST00000090174 2008 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
Ddb1Q3U1J4 Adgra2-201ENSMUST00000033876 5760 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.87
Ddb1Q3U1J4 Sec11a-201ENSMUST00000026818 1345 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.87
Ddb1Q3U1J4 Osbpl1a-207ENSMUST00000121808 3030 ntTSL 1 (best) BASIC20.51■□□□□ 0.87
Ddb1Q3U1J4 Ttll9-202ENSMUST00000103155 1552 ntAPPRIS P3 TSL 1 (best) BASIC20.51■□□□□ 0.87
Ddb1Q3U1J4 Chtf8-206ENSMUST00000177068 2931 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
Ddb1Q3U1J4 Chaf1b-201ENSMUST00000023666 1922 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
Ddb1Q3U1J4 Gspt1-201ENSMUST00000080030 2898 ntAPPRIS P3 TSL 1 (best) BASIC20.51■□□□□ 0.87
Ddb1Q3U1J4 Mrpl58-202ENSMUST00000103036 749 ntTSL 1 (best) BASIC20.51■□□□□ 0.87
Ddb1Q3U1J4 Mgarp-203ENSMUST00000141156 1246 ntAPPRIS ALT2 TSL 2 BASIC20.51■□□□□ 0.87
Ddb1Q3U1J4 Rian-216ENSMUST00000183215 880 ntTSL 3 BASIC20.51■□□□□ 0.87
Ddb1Q3U1J4 Gm9682-201ENSMUST00000197505 556 ntBASIC20.51■□□□□ 0.87
Ddb1Q3U1J4 Gm45091-201ENSMUST00000205799 504 ntTSL 3 BASIC20.51■□□□□ 0.87
Ddb1Q3U1J4 Gm10747-201ENSMUST00000217799 1014 ntTSL 1 (best) BASIC20.51■□□□□ 0.87
Ddb1Q3U1J4 Map6-202ENSMUST00000107100 2335 ntAPPRIS ALT2 TSL 1 (best) BASIC20.51■□□□□ 0.87
Ddb1Q3U1J4 Nrxn2-203ENSMUST00000113459 3285 ntTSL 2 BASIC20.51■□□□□ 0.87
Ddb1Q3U1J4 Zbtb48-201ENSMUST00000066715 2218 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
Ddb1Q3U1J4 1700051A21Rik-201ENSMUST00000147937 1516 ntTSL 5 BASIC20.51■□□□□ 0.87
Ddb1Q3U1J4 Ptprf-201ENSMUST00000049074 7656 ntAPPRIS P1 TSL 5 BASIC20.51■□□□□ 0.87
Ddb1Q3U1J4 Zbtb32-202ENSMUST00000108151 1775 ntAPPRIS P1 TSL 5 BASIC20.51■□□□□ 0.87
Ddb1Q3U1J4 Upf1-201ENSMUST00000075666 4618 ntAPPRIS P2 TSL 1 (best) BASIC20.51■□□□□ 0.87
Ddb1Q3U1J4 Mael-202ENSMUST00000194057 1691 ntTSL 5 BASIC20.51■□□□□ 0.87
Ddb1Q3U1J4 Slc38a10-203ENSMUST00000076697 1672 ntAPPRIS ALT2 TSL 1 (best) BASIC20.51■□□□□ 0.87
Ddb1Q3U1J4 Hand1-201ENSMUST00000036917 1904 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
Ddb1Q3U1J4 Phyhd1-204ENSMUST00000113645 1325 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
Ddb1Q3U1J4 Wnk2-205ENSMUST00000110097 6882 ntAPPRIS ALT2 TSL 5 BASIC20.5■□□□□ 0.87
Ddb1Q3U1J4 Wnk2-203ENSMUST00000091623 6897 ntAPPRIS P4 TSL 5 BASIC20.5■□□□□ 0.87
Ddb1Q3U1J4 Gm5922-201ENSMUST00000214963 1723 ntTSL 1 (best) BASIC20.5■□□□□ 0.87
Ddb1Q3U1J4 Chga-201ENSMUST00000021610 1883 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
Ddb1Q3U1J4 Drd2-201ENSMUST00000075764 2547 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
Ddb1Q3U1J4 Mycbpap-201ENSMUST00000040692 1512 ntTSL 1 (best) BASIC20.5■□□□□ 0.87
Ddb1Q3U1J4 Gm15427-201ENSMUST00000117288 531 ntBASIC20.5■□□□□ 0.87
Ddb1Q3U1J4 Rpl18-ps1-201ENSMUST00000121555 525 ntBASIC20.5■□□□□ 0.87
Ddb1Q3U1J4 Bnipl-204ENSMUST00000137250 1251 ntTSL 5 BASIC20.5■□□□□ 0.87
Ddb1Q3U1J4 9530003J23Rik-202ENSMUST00000159193 1033 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
Ddb1Q3U1J4 Tgfb1i1-203ENSMUST00000163609 1053 ntTSL 5 BASIC20.5■□□□□ 0.87
Ddb1Q3U1J4 Gm45747-201ENSMUST00000212203 999 ntBASIC20.5■□□□□ 0.87
Ddb1Q3U1J4 Hist1h3c-201ENSMUST00000091752 630 ntAPPRIS P1 BASIC20.5■□□□□ 0.87
Ddb1Q3U1J4 Fam72a-201ENSMUST00000068613 2191 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
Ddb1Q3U1J4 Gm29514-202ENSMUST00000186665 2214 ntTSL 1 (best) BASIC20.5■□□□□ 0.87
Ddb1Q3U1J4 Gm38392-202ENSMUST00000165196 1303 ntAPPRIS P5 TSL 5 BASIC20.5■□□□□ 0.87
Ddb1Q3U1J4 Sept8-207ENSMUST00000147912 1742 ntAPPRIS ALT2 TSL 5 BASIC20.5■□□□□ 0.87
Ddb1Q3U1J4 Nphp1-201ENSMUST00000028857 2260 ntAPPRIS P3 TSL 1 (best) BASIC20.5■□□□□ 0.87
Ddb1Q3U1J4 Slc25a47-202ENSMUST00000221080 1890 ntTSL 1 (best) BASIC20.5■□□□□ 0.87
Ddb1Q3U1J4 Ccdc30-201ENSMUST00000044781 1464 ntTSL 1 (best) BASIC20.5■□□□□ 0.87
Ddb1Q3U1J4 Baiap2-202ENSMUST00000075180 3518 ntAPPRIS ALT2 TSL 1 (best) BASIC20.49■□□□□ 0.87
Ddb1Q3U1J4 Pld5-202ENSMUST00000111166 1370 ntTSL 1 (best) BASIC20.49■□□□□ 0.87
Ddb1Q3U1J4 Asap2-202ENSMUST00000064595 5678 ntAPPRIS P4 TSL 5 BASIC20.49■□□□□ 0.87
Ddb1Q3U1J4 Hs3st1-201ENSMUST00000053116 1684 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
Ddb1Q3U1J4 Eef1akmt4-201ENSMUST00000115522 1130 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
Ddb1Q3U1J4 Tspan5-203ENSMUST00000121826 1114 ntTSL 1 (best) BASIC20.49■□□□□ 0.87
Ddb1Q3U1J4 Cyp2d40-201ENSMUST00000055721 1161 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
Ddb1Q3U1J4 Pmf1-201ENSMUST00000056370 1007 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
Ddb1Q3U1J4 Atp11a-202ENSMUST00000091237 7443 ntAPPRIS P3 TSL 1 (best) BASIC20.49■□□□□ 0.87
Ddb1Q3U1J4 Atp6v1c2-201ENSMUST00000020884 1569 ntTSL 1 (best) BASIC20.49■□□□□ 0.87
Ddb1Q3U1J4 Tdh-201ENSMUST00000022522 1881 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
Ddb1Q3U1J4 Nova2-202ENSMUST00000220302 8372 ntAPPRIS P1 TSL 5 BASIC20.49■□□□□ 0.87
Ddb1Q3U1J4 Nova2-201ENSMUST00000032571 8372 ntTSL 5 BASIC20.49■□□□□ 0.87
Ddb1Q3U1J4 Cep68-204ENSMUST00000162811 2788 ntAPPRIS ALT2 TSL 1 (best) BASIC20.49■□□□□ 0.87
Ddb1Q3U1J4 Olah-202ENSMUST00000115087 1479 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
Ddb1Q3U1J4 Sirt4-202ENSMUST00000112067 1645 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
Ddb1Q3U1J4 Rnps1-203ENSMUST00000163717 1920 ntAPPRIS P1 TSL 5 BASIC20.49■□□□□ 0.87
Ddb1Q3U1J4 Il1rn-201ENSMUST00000114482 1986 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
Ddb1Q3U1J4 Gpaa1-210ENSMUST00000172281 1809 ntTSL 5 BASIC20.48■□□□□ 0.87
Ddb1Q3U1J4 Hmgb3-201ENSMUST00000015361 1544 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
Ddb1Q3U1J4 Zpbp2-204ENSMUST00000107511 1395 ntAPPRIS ALT2 TSL 1 (best) BASIC20.48■□□□□ 0.87
Ddb1Q3U1J4 Ccdc106-204ENSMUST00000207974 2492 ntTSL 2 BASIC20.48■□□□□ 0.87
Ddb1Q3U1J4 Map2k3-201ENSMUST00000019076 2198 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
Ddb1Q3U1J4 Pdzd3-201ENSMUST00000034618 2193 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
Ddb1Q3U1J4 Egln1-201ENSMUST00000034469 3594 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
Ddb1Q3U1J4 Sema6d-203ENSMUST00000077847 6444 ntTSL 5 BASIC20.48■□□□□ 0.87
Ddb1Q3U1J4 Tacstd2-201ENSMUST00000058178 1735 ntAPPRIS P1 BASIC20.48■□□□□ 0.87
Ddb1Q3U1J4 A430078I02Rik-202ENSMUST00000154066 2233 ntTSL 1 (best) BASIC20.48■□□□□ 0.87
Ddb1Q3U1J4 Zglp1-201ENSMUST00000115494 1010 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
Ddb1Q3U1J4 Gm12892-201ENSMUST00000117367 1146 ntBASIC20.48■□□□□ 0.87
Ddb1Q3U1J4 Pfn2-203ENSMUST00000120289 905 ntTSL 2 BASIC20.48■□□□□ 0.87
Ddb1Q3U1J4 Chchd7-208ENSMUST00000121651 620 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
Ddb1Q3U1J4 Chchd7-201ENSMUST00000041122 672 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
Ddb1Q3U1J4 Tfap2b-202ENSMUST00000064976 1946 ntTSL 1 (best) BASIC20.48■□□□□ 0.87
Ddb1Q3U1J4 Nrn1-204ENSMUST00000224323 1779 ntBASIC20.48■□□□□ 0.87
Ddb1Q3U1J4 Gm5953-201ENSMUST00000220644 2616 ntBASIC20.48■□□□□ 0.87
Ddb1Q3U1J4 Tmem136-202ENSMUST00000213544 2463 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
Ddb1Q3U1J4 Selenok-201ENSMUST00000112268 1678 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
Ddb1Q3U1J4 Ftsj1-202ENSMUST00000115594 1529 ntTSL 5 BASIC20.48■□□□□ 0.87
Ddb1Q3U1J4 Gm37519-201ENSMUST00000191687 2210 ntBASIC20.47■□□□□ 0.87
Ddb1Q3U1J4 Sirt5-211ENSMUST00000223194 1398 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
Ddb1Q3U1J4 Hpn-201ENSMUST00000039435 1743 ntTSL 1 (best) BASIC20.47■□□□□ 0.87
Ddb1Q3U1J4 Amdhd1-201ENSMUST00000016034 2421 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
Ddb1Q3U1J4 Med9-201ENSMUST00000081980 1920 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
Ddb1Q3U1J4 Atp6v0a2-201ENSMUST00000037865 5345 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
Ddb1Q3U1J4 Irf7-202ENSMUST00000097952 1764 ntAPPRIS ALT2 TSL 1 (best) BASIC20.47■□□□□ 0.87
Ddb1Q3U1J4 Lmo4-202ENSMUST00000121112 1447 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
Retrieved 100 of 76,532 protein–RNA pairs in 26.9 ms