Protein–RNA interactions for Protein: Q05722

Col9a1, Collagen alpha-1(IX) chain, mousemouse

Predictions only

Length 921 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col9a1Q05722 Slc1a6-201ENSMUST00000005490 2029 ntAPPRIS P1 TSL 1 (best) BASIC15.84■□□□□ 0.13
Col9a1Q05722 Lhpp-201ENSMUST00000033241 1612 ntAPPRIS P1 TSL 1 (best) BASIC15.84■□□□□ 0.13
Col9a1Q05722 Atp5a1-201ENSMUST00000026495 2471 ntAPPRIS P1 TSL 1 (best) BASIC15.84■□□□□ 0.13
Col9a1Q05722 Ighv5-17-201ENSMUST00000103459 405 ntAPPRIS P1 BASIC15.84■□□□□ 0.13
Col9a1Q05722 Gm15869-201ENSMUST00000126427 734 ntTSL 1 (best) BASIC15.84■□□□□ 0.13
Col9a1Q05722 4930481B07Rik-201ENSMUST00000128160 1089 ntTSL 1 (best) BASIC15.84■□□□□ 0.13
Col9a1Q05722 Tbx3os1-203ENSMUST00000140101 490 ntTSL 3 BASIC15.84■□□□□ 0.13
Col9a1Q05722 Gm15635-203ENSMUST00000148972 554 ntTSL 2 BASIC15.84■□□□□ 0.13
Col9a1Q05722 Gm26771-201ENSMUST00000180472 1082 ntTSL 1 (best) BASIC15.84■□□□□ 0.13
Col9a1Q05722 Gm37277-201ENSMUST00000194052 1111 ntBASIC15.84■□□□□ 0.13
Col9a1Q05722 Gm45747-201ENSMUST00000212203 999 ntBASIC15.84■□□□□ 0.13
Col9a1Q05722 AC093926.2-201ENSMUST00000214468 1228 ntBASIC15.84■□□□□ 0.13
Col9a1Q05722 Olfr1214-201ENSMUST00000099804 936 ntAPPRIS P1 BASIC15.84■□□□□ 0.13
Col9a1Q05722 Coq10a-205ENSMUST00000220027 1307 ntAPPRIS ALT2 TSL 5 BASIC15.84■□□□□ 0.13
Col9a1Q05722 Scaf11-201ENSMUST00000047835 5766 ntTSL 5 BASIC15.84■□□□□ 0.13
Col9a1Q05722 Miga1-201ENSMUST00000068243 2689 ntTSL 1 (best) BASIC15.84■□□□□ 0.13
Col9a1Q05722 Hdgfl3-202ENSMUST00000107305 5887 ntAPPRIS P2 TSL 1 (best) BASIC15.84■□□□□ 0.13
Col9a1Q05722 Gja3-201ENSMUST00000061614 2766 ntAPPRIS P1 TSL 1 (best) BASIC15.84■□□□□ 0.13
Col9a1Q05722 G730003C15Rik-202ENSMUST00000189096 2309 ntBASIC15.84■□□□□ 0.13
Col9a1Q05722 P2ry2-204ENSMUST00000207916 2372 ntAPPRIS P1 TSL 1 (best) BASIC15.84■□□□□ 0.13
Col9a1Q05722 Galnt9-201ENSMUST00000040001 2883 ntAPPRIS P1 TSL 1 (best) BASIC15.84■□□□□ 0.13
Col9a1Q05722 Phldb3-204ENSMUST00000206422 2564 ntAPPRIS P1 TSL 5 BASIC15.83■□□□□ 0.13
Col9a1Q05722 Supv3l1-201ENSMUST00000020273 2604 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.13
Col9a1Q05722 Tmem51os1-202ENSMUST00000141769 2131 ntTSL 1 (best) BASIC15.83■□□□□ 0.13
Col9a1Q05722 Plekhh1-201ENSMUST00000039928 6439 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.13
Col9a1Q05722 Creg1-202ENSMUST00000111432 2163 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.13
Col9a1Q05722 Hdhd2-202ENSMUST00000097521 1716 ntTSL 1 (best) BASIC15.83■□□□□ 0.13
Col9a1Q05722 Kmt5b-204ENSMUST00000113970 2975 ntAPPRIS ALT2 TSL 1 (best) BASIC15.83■□□□□ 0.12
Col9a1Q05722 5730507C01Rik-201ENSMUST00000063216 2431 ntAPPRIS P3 TSL 1 (best) BASIC15.83■□□□□ 0.12
Col9a1Q05722 Hist1h4n-201ENSMUST00000102979 430 ntAPPRIS P1 BASIC15.83■□□□□ 0.12
Col9a1Q05722 Nme1-202ENSMUST00000107844 452 ntTSL 3 BASIC15.83■□□□□ 0.12
Col9a1Q05722 Wdr38-202ENSMUST00000112872 1194 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.12
Col9a1Q05722 Rerg-203ENSMUST00000119610 890 ntTSL 3 BASIC15.83■□□□□ 0.12
Col9a1Q05722 Gm14913-201ENSMUST00000120011 1093 ntBASIC15.83■□□□□ 0.12
Col9a1Q05722 4930527A07Rik-201ENSMUST00000130677 559 ntTSL 1 (best) BASIC15.83■□□□□ 0.12
Col9a1Q05722 Gm17077-201ENSMUST00000133179 279 ntTSL 5 BASIC15.83■□□□□ 0.12
Col9a1Q05722 2310061I04Rik-204ENSMUST00000148721 1293 ntAPPRIS P1 TSL 5 BASIC15.83■□□□□ 0.12
Col9a1Q05722 Atp6v1f-203ENSMUST00000149646 806 ntTSL 5 BASIC15.83■□□□□ 0.12
Col9a1Q05722 Gm15458-201ENSMUST00000156950 709 ntTSL 5 BASIC15.83■□□□□ 0.12
Col9a1Q05722 Ccdc24-209ENSMUST00000171052 891 ntAPPRIS P1 TSL 5 BASIC15.83■□□□□ 0.12
Col9a1Q05722 Tbc1d7-202ENSMUST00000179852 1246 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.12
Col9a1Q05722 Rac3-201ENSMUST00000018156 1076 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.12
Col9a1Q05722 Nectin2-202ENSMUST00000108450 1955 ntAPPRIS ALT2 TSL 1 (best) BASIC15.83■□□□□ 0.12
Col9a1Q05722 Gm45188-201ENSMUST00000207592 1369 ntTSL 1 (best) BASIC15.83■□□□□ 0.12
Col9a1Q05722 Evc-202ENSMUST00000114148 2119 ntAPPRIS ALT2 TSL 1 (best) BASIC15.83■□□□□ 0.12
Col9a1Q05722 Gas2-201ENSMUST00000051912 2181 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.12
Col9a1Q05722 Rnf25-202ENSMUST00000113721 1451 ntAPPRIS ALT1 TSL 1 (best) BASIC15.83■□□□□ 0.12
Col9a1Q05722 CT025626.1-201ENSMUST00000223735 1455 ntBASIC15.83■□□□□ 0.12
Col9a1Q05722 Fam105a-202ENSMUST00000226145 2950 ntAPPRIS P1 BASIC15.83■□□□□ 0.12
Col9a1Q05722 Gab1-202ENSMUST00000210676 4985 ntTSL 1 (best) BASIC15.83■□□□□ 0.12
Col9a1Q05722 Farsa-202ENSMUST00000109754 1795 ntAPPRIS ALT1 TSL 1 (best) BASIC15.82■□□□□ 0.12
Col9a1Q05722 Smtnl1-201ENSMUST00000028471 1761 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
Col9a1Q05722 E2f1-202ENSMUST00000103145 2732 ntAPPRIS P3 TSL 1 (best) BASIC15.82■□□□□ 0.12
Col9a1Q05722 Adamtsl5-201ENSMUST00000095446 1957 ntAPPRIS P1 TSL 5 BASIC15.82■□□□□ 0.12
Col9a1Q05722 Grk6-206ENSMUST00000224995 2971 ntBASIC15.82■□□□□ 0.12
Col9a1Q05722 Prkci-201ENSMUST00000108249 4708 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
Col9a1Q05722 Nfatc2-205ENSMUST00000137451 2369 ntTSL 1 (best) BASIC15.82■□□□□ 0.12
Col9a1Q05722 Gm20815-201ENSMUST00000115496 1224 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
Col9a1Q05722 Gng7-205ENSMUST00000118465 875 ntAPPRIS ALT1 TSL 1 (best) BASIC15.82■□□□□ 0.12
Col9a1Q05722 Fzr1-202ENSMUST00000118812 1215 ntTSL 5 BASIC15.82■□□□□ 0.12
Col9a1Q05722 Tmem150cos-201ENSMUST00000143245 1216 ntTSL 1 (best) BASIC15.82■□□□□ 0.12
Col9a1Q05722 Gm13066-201ENSMUST00000145263 884 ntTSL 1 (best) BASIC15.82■□□□□ 0.12
Col9a1Q05722 Gm10244-202ENSMUST00000156905 474 ntTSL 3 BASIC15.82■□□□□ 0.12
Col9a1Q05722 Cpsf4l-205ENSMUST00000173655 1213 ntAPPRIS P3 TSL 1 (best) BASIC15.82■□□□□ 0.12
Col9a1Q05722 Gm21812-202ENSMUST00000188908 1224 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
Col9a1Q05722 Mlnr-ps-201ENSMUST00000208959 969 ntBASIC15.82■□□□□ 0.12
Col9a1Q05722 Gm5779-201ENSMUST00000218467 910 ntBASIC15.82■□□□□ 0.12
Col9a1Q05722 Atp5o-201ENSMUST00000023677 838 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
Col9a1Q05722 Mdk-201ENSMUST00000028672 1054 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
Col9a1Q05722 Prl8a1-201ENSMUST00000006664 864 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
Col9a1Q05722 Fxyd1-202ENSMUST00000071697 522 ntAPPRIS P1 TSL 3 BASIC15.82■□□□□ 0.12
Col9a1Q05722 Gm26540-201ENSMUST00000181858 1310 ntTSL 5 BASIC15.82■□□□□ 0.12
Col9a1Q05722 Ldhal6b-201ENSMUST00000189788 1445 ntAPPRIS P1 BASIC15.82■□□□□ 0.12
Col9a1Q05722 Gm9917-202ENSMUST00000181099 1499 ntTSL 1 (best) BASIC15.82■□□□□ 0.12
Col9a1Q05722 Mark2-207ENSMUST00000165286 2975 ntAPPRIS ALT2 TSL 5 BASIC15.82■□□□□ 0.12
Col9a1Q05722 Shox2-202ENSMUST00000162060 1537 ntTSL 3 BASIC15.82■□□□□ 0.12
Col9a1Q05722 Aadat-201ENSMUST00000079472 1972 ntAPPRIS P2 TSL 1 (best) BASIC15.82■□□□□ 0.12
Col9a1Q05722 Arid3b-202ENSMUST00000098686 1969 ntAPPRIS ALT2 TSL 1 (best) BASIC15.82■□□□□ 0.12
Col9a1Q05722 Tatdn2-201ENSMUST00000089018 3096 ntAPPRIS P3 TSL 1 (best) BASIC15.81■□□□□ 0.12
Col9a1Q05722 Gas2-203ENSMUST00000107591 2232 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
Col9a1Q05722 Ankrd61-202ENSMUST00000110717 1498 ntAPPRIS P3 TSL 1 (best) BASIC15.81■□□□□ 0.12
Col9a1Q05722 Gm3054-201ENSMUST00000111075 265 ntTSL 5 BASIC15.81■□□□□ 0.12
Col9a1Q05722 Fam133b-201ENSMUST00000115527 1491 ntAPPRIS P2 TSL 1 (best) BASIC15.81■□□□□ 0.12
Col9a1Q05722 Hemk1-202ENSMUST00000118051 453 ntTSL 3 BASIC15.81■□□□□ 0.12
Col9a1Q05722 Lancl1-203ENSMUST00000119559 1385 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
Col9a1Q05722 Ubap1l-201ENSMUST00000147185 1380 ntAPPRIS P1 TSL 5 BASIC15.81■□□□□ 0.12
Col9a1Q05722 Tal1-204ENSMUST00000162489 2894 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
Col9a1Q05722 Abi1-215ENSMUST00000178908 2239 ntAPPRIS ALT1 TSL 5 BASIC15.81■□□□□ 0.12
Col9a1Q05722 Gm7507-201ENSMUST00000183053 1008 ntBASIC15.81■□□□□ 0.12
Col9a1Q05722 Gm6473-201ENSMUST00000188572 1210 ntBASIC15.81■□□□□ 0.12
Col9a1Q05722 Gm26728-202ENSMUST00000203423 1333 ntTSL 1 (best) BASIC15.81■□□□□ 0.12
Col9a1Q05722 Ano10-206ENSMUST00000216670 2108 ntTSL 1 (best) BASIC15.81■□□□□ 0.12
Col9a1Q05722 AC125311.2-201ENSMUST00000227477 1940 ntBASIC15.81■□□□□ 0.12
Col9a1Q05722 Calcb-201ENSMUST00000032902 962 ntAPPRIS P2 TSL 1 (best) BASIC15.81■□□□□ 0.12
Col9a1Q05722 Neurl2-201ENSMUST00000042775 1014 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
Col9a1Q05722 Gapdh-201ENSMUST00000073605 1272 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
Col9a1Q05722 Dscam-201ENSMUST00000056102 7498 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
Col9a1Q05722 Cmip-202ENSMUST00000166750 2408 ntAPPRIS P1 TSL 5 BASIC15.8■□□□□ 0.12
Col9a1Q05722 Shkbp1-201ENSMUST00000003857 2358 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
Col9a1Q05722 Rac1-202ENSMUST00000100489 2325 ntTSL 1 (best) BASIC15.8■□□□□ 0.12
Retrieved 100 of 76,532 protein–RNA pairs in 35.9 ms