Protein–RNA interactions for Protein: P50431

Shmt1, Serine hydroxymethyltransferase, cytosolic, mousemouse

Predictions only

Length 478 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Shmt1P50431 Pofut2-201ENSMUST00000020493 2290 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
Shmt1P50431 Chga-201ENSMUST00000021610 1883 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
Shmt1P50431 Slc11a1-201ENSMUST00000027368 2315 ntAPPRIS P2 TSL 1 (best) BASIC17.12■□□□□ 0.33
Shmt1P50431 E130307A14Rik-213ENSMUST00000155482 2803 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
Shmt1P50431 Susd1-201ENSMUST00000040166 3295 ntAPPRIS P2 TSL 1 (best) BASIC17.11■□□□□ 0.33
Shmt1P50431 Kifc3-203ENSMUST00000169748 3384 ntAPPRIS ALT2 TSL 1 (best) BASIC17.11■□□□□ 0.33
Shmt1P50431 Sirt6-202ENSMUST00000119324 1667 ntAPPRIS ALT2 TSL 1 (best) BASIC17.11■□□□□ 0.33
Shmt1P50431 Ift74-202ENSMUST00000107104 1713 ntTSL 2 BASIC17.11■□□□□ 0.33
Shmt1P50431 Tmem94-202ENSMUST00000103033 5238 ntAPPRIS P2 TSL 2 BASIC17.11■□□□□ 0.33
Shmt1P50431 Gm15165-201ENSMUST00000118140 502 ntBASIC17.11■□□□□ 0.33
Shmt1P50431 1700001G17Rik-201ENSMUST00000191779 889 ntBASIC17.11■□□□□ 0.33
Shmt1P50431 Ankrd23-204ENSMUST00000194853 1073 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
Shmt1P50431 Arhgap33-206ENSMUST00000208522 781 ntTSL 3 BASIC17.11■□□□□ 0.33
Shmt1P50431 Icam4-202ENSMUST00000215077 1028 ntAPPRIS ALT2 TSL 1 (best) BASIC17.11■□□□□ 0.33
Shmt1P50431 Olfr571-201ENSMUST00000061738 969 ntAPPRIS P1 BASIC17.11■□□□□ 0.33
Shmt1P50431 Nectin3-202ENSMUST00000023335 9116 ntAPPRIS ALT2 TSL 1 (best) BASIC17.11■□□□□ 0.33
Shmt1P50431 Slc25a2-201ENSMUST00000058635 1369 ntAPPRIS P1 BASIC17.11■□□□□ 0.33
Shmt1P50431 Atp1a1-201ENSMUST00000036493 3679 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
Shmt1P50431 Gm14261-201ENSMUST00000145105 1429 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
Shmt1P50431 Tnks-201ENSMUST00000033929 9163 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
Shmt1P50431 Layn-204ENSMUST00000217212 1500 ntAPPRIS ALT2 TSL 1 (best) BASIC17.11■□□□□ 0.33
Shmt1P50431 Zfp367-202ENSMUST00000117241 2753 ntAPPRIS ALT2 TSL 1 (best) BASIC17.11■□□□□ 0.33
Shmt1P50431 Apba1-201ENSMUST00000025830 6632 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
Shmt1P50431 Tmem151b-201ENSMUST00000180252 4851 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
Shmt1P50431 Ccdc184-201ENSMUST00000031914 2329 ntAPPRIS P1 BASIC17.1■□□□□ 0.33
Shmt1P50431 Cct8-201ENSMUST00000026704 2394 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
Shmt1P50431 Hnrnpa1-202ENSMUST00000087351 1759 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
Shmt1P50431 Dhx30-224ENSMUST00000200066 4623 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
Shmt1P50431 Zfp446-202ENSMUST00000108535 2594 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
Shmt1P50431 Map3k10-202ENSMUST00000108341 3403 ntAPPRIS ALT2 TSL 5 BASIC17.1■□□□□ 0.33
Shmt1P50431 Wscd1-203ENSMUST00000108511 2866 ntAPPRIS P1 TSL 5 BASIC17.1■□□□□ 0.33
Shmt1P50431 1810010H24Rik-201ENSMUST00000106767 1100 ntAPPRIS P2 TSL 2 BASIC17.1■□□□□ 0.33
Shmt1P50431 Kxd1-202ENSMUST00000117580 696 ntTSL 5 BASIC17.1■□□□□ 0.33
Shmt1P50431 Gm12963-201ENSMUST00000131846 783 ntTSL 5 BASIC17.1■□□□□ 0.33
Shmt1P50431 Slc19a2-204ENSMUST00000169394 894 ntTSL 5 BASIC17.1■□□□□ 0.33
Shmt1P50431 Syne4-208ENSMUST00000176304 1006 ntAPPRIS ALT2 TSL 5 BASIC17.1■□□□□ 0.33
Shmt1P50431 9530052E02Rik-201ENSMUST00000180750 949 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
Shmt1P50431 Msh3-205ENSMUST00000187424 666 ntTSL 2 BASIC17.1■□□□□ 0.33
Shmt1P50431 Cklf-201ENSMUST00000034342 667 ntAPPRIS P4 TSL 1 (best) BASIC17.1■□□□□ 0.33
Shmt1P50431 Rsph3a-201ENSMUST00000097423 2189 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
Shmt1P50431 Inhba-202ENSMUST00000164993 1529 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
Shmt1P50431 Gm40773-201ENSMUST00000218113 1502 ntTSL 5 BASIC17.1■□□□□ 0.33
Shmt1P50431 Ccdc51-201ENSMUST00000026735 1526 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
Shmt1P50431 Ush1c-208ENSMUST00000177212 1696 ntAPPRIS ALT2 TSL 5 BASIC17.1■□□□□ 0.33
Shmt1P50431 Sil1-201ENSMUST00000025215 1695 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
Shmt1P50431 Disc1-206ENSMUST00000118942 2860 ntAPPRIS ALT2 TSL 1 (best) BASIC17.1■□□□□ 0.33
Shmt1P50431 Dtwd2-203ENSMUST00000163590 2857 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
Shmt1P50431 Lrig3-201ENSMUST00000074807 4016 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
Shmt1P50431 D430001F17Rik-201ENSMUST00000141344 1858 ntTSL 5 BASIC17.1■□□□□ 0.33
Shmt1P50431 Il10rb-201ENSMUST00000023691 1850 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
Shmt1P50431 Rgma-204ENSMUST00000139780 3371 ntAPPRIS ALT2 TSL 1 (best) BASIC17.09■□□□□ 0.33
Shmt1P50431 Was-201ENSMUST00000033505 2114 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
Shmt1P50431 Abi1-215ENSMUST00000178908 2239 ntAPPRIS ALT1 TSL 5 BASIC17.09■□□□□ 0.33
Shmt1P50431 Csnk1a1-206ENSMUST00000165721 2323 ntAPPRIS ALT1 TSL 1 (best) BASIC17.09■□□□□ 0.33
Shmt1P50431 Glcci1-201ENSMUST00000064285 6200 ntAPPRIS P3 TSL 1 (best) BASIC17.09■□□□□ 0.33
Shmt1P50431 Pemt-203ENSMUST00000102693 961 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
Shmt1P50431 Fam107b-203ENSMUST00000115053 688 ntAPPRIS P1 TSL 3 BASIC17.09■□□□□ 0.33
Shmt1P50431 Chd3os-202ENSMUST00000151617 389 ntTSL 3 BASIC17.09■□□□□ 0.33
Shmt1P50431 Eapp-203ENSMUST00000160085 676 ntTSL 3 BASIC17.09■□□□□ 0.33
Shmt1P50431 Psma3-204ENSMUST00000160864 859 ntTSL 5 BASIC17.09■□□□□ 0.33
Shmt1P50431 Gtf3c2-202ENSMUST00000200871 318 ntTSL 3 BASIC17.09■□□□□ 0.33
Shmt1P50431 Zfp524-203ENSMUST00000209030 1128 ntAPPRIS P1 TSL 5 BASIC17.09■□□□□ 0.33
Shmt1P50431 D830030K20Rik-204ENSMUST00000225885 1142 ntBASIC17.09■□□□□ 0.33
Shmt1P50431 Cmtm5-203ENSMUST00000227441 610 ntBASIC17.09■□□□□ 0.33
Shmt1P50431 Plcl2-201ENSMUST00000043938 4050 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
Shmt1P50431 Cmtm3-201ENSMUST00000034343 1616 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
Shmt1P50431 Hs3st1-201ENSMUST00000053116 1684 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
Shmt1P50431 Sctr-202ENSMUST00000189037 1819 ntAPPRIS ALT2 TSL 1 (best) BASIC17.09■□□□□ 0.33
Shmt1P50431 Map3k5-201ENSMUST00000095806 5450 ntAPPRIS P2 TSL 1 (best) BASIC17.09■□□□□ 0.33
Shmt1P50431 Gusb-203ENSMUST00000111308 2038 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
Shmt1P50431 Degs1-201ENSMUST00000035295 2048 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
Shmt1P50431 Rbm47-203ENSMUST00000113724 2186 ntAPPRIS P3 TSL 5 BASIC17.09■□□□□ 0.33
Shmt1P50431 Bcor-206ENSMUST00000124033 6785 ntAPPRIS ALT2 TSL 1 (best) BASIC17.09■□□□□ 0.33
Shmt1P50431 Slc22a16-202ENSMUST00000078314 2269 ntAPPRIS P2 TSL 1 (best) BASIC17.09■□□□□ 0.33
Shmt1P50431 Cygb-201ENSMUST00000021166 2331 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
Shmt1P50431 Fancg-201ENSMUST00000030165 2771 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
Shmt1P50431 Map6-207ENSMUST00000208924 2906 ntAPPRIS ALT2 TSL 1 (best) BASIC17.09■□□□□ 0.33
Shmt1P50431 Gpr137b-201ENSMUST00000021738 2971 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
Shmt1P50431 Uhrf2-201ENSMUST00000025739 3536 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
Shmt1P50431 Adnp2-201ENSMUST00000066743 5012 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
Shmt1P50431 Lhx6-203ENSMUST00000112963 3481 ntTSL 2 BASIC17.08■□□□□ 0.33
Shmt1P50431 Pskh1-201ENSMUST00000049699 3255 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.33
Shmt1P50431 Shh-201ENSMUST00000002708 2847 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.33
Shmt1P50431 Dnaaf3-201ENSMUST00000094897 2224 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.33
Shmt1P50431 A230103J11Rik-202ENSMUST00000156084 2086 ntTSL 1 (best) BASIC17.08■□□□□ 0.33
Shmt1P50431 Wdr90-205ENSMUST00000176923 5666 ntAPPRIS ALT2 TSL 5 BASIC17.08■□□□□ 0.33
Shmt1P50431 Ccdc88a-201ENSMUST00000040182 9376 ntAPPRIS P1 TSL 5 BASIC17.08■□□□□ 0.33
Shmt1P50431 Rtn1-201ENSMUST00000021497 1544 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
Shmt1P50431 Fgf20-202ENSMUST00000118639 587 ntTSL 3 BASIC17.08■□□□□ 0.32
Shmt1P50431 Tsfm-207ENSMUST00000152054 655 ntTSL 3 BASIC17.08■□□□□ 0.32
Shmt1P50431 Upp1-205ENSMUST00000164791 1252 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
Shmt1P50431 Gm31727-201ENSMUST00000210102 360 ntTSL 3 BASIC17.08■□□□□ 0.32
Shmt1P50431 Fcnb-201ENSMUST00000028179 1170 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
Shmt1P50431 Nmu-201ENSMUST00000031146 828 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
Shmt1P50431 Smurf2-201ENSMUST00000092517 3125 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
Shmt1P50431 Arntl-204ENSMUST00000210238 2976 ntAPPRIS P1 TSL 5 BASIC17.08■□□□□ 0.32
Shmt1P50431 Strn-203ENSMUST00000145910 8629 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
Shmt1P50431 Lzts2-201ENSMUST00000039016 2825 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
Shmt1P50431 Abcb10-201ENSMUST00000075578 4306 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
Shmt1P50431 D16Ertd472e-203ENSMUST00000114220 2453 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
Retrieved 100 of 76,532 protein–RNA pairs in 23.9 ms