Protein–RNA interactions for Protein: P18828

Sdc1, Syndecan-1, mousemouse

Predictions only

Length 311 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Sdc1P18828 Gm14634-201ENSMUST00000139163 1662 ntTSL 1 (best) BASIC13.37□□□□□ -0.27
Sdc1P18828 Gata5os-201ENSMUST00000069943 1678 ntTSL 2 BASIC13.37□□□□□ -0.27
Sdc1P18828 Ppp2r2c-201ENSMUST00000031003 4088 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
Sdc1P18828 Adipor1-201ENSMUST00000027727 3123 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
Sdc1P18828 Gm13509-201ENSMUST00000119733 1308 ntBASIC13.37□□□□□ -0.27
Sdc1P18828 C430049E01Rik-201ENSMUST00000207913 1820 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
Sdc1P18828 Wnt10b-204ENSMUST00000226655 1807 ntBASIC13.36□□□□□ -0.27
Sdc1P18828 Ccdc50-203ENSMUST00000100026 7089 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
Sdc1P18828 Zfp184-202ENSMUST00000102978 3198 ntAPPRIS P1 TSL 5 BASIC13.36□□□□□ -0.27
Sdc1P18828 Derl1-201ENSMUST00000022993 3175 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
Sdc1P18828 Aptx-202ENSMUST00000068125 5383 ntAPPRIS P4 TSL 1 (best) BASIC13.36□□□□□ -0.27
Sdc1P18828 Slc16a7-205ENSMUST00000210780 2562 ntAPPRIS P1 TSL 5 BASIC13.36□□□□□ -0.27
Sdc1P18828 Casp8-201ENSMUST00000027189 2585 ntAPPRIS P3 TSL 1 (best) BASIC13.36□□□□□ -0.27
Sdc1P18828 Afg3l2-201ENSMUST00000025408 3085 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
Sdc1P18828 Tbc1d22b-201ENSMUST00000048677 3592 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
Sdc1P18828 Oas1g-201ENSMUST00000086368 1977 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
Sdc1P18828 Rgl1-203ENSMUST00000111859 5092 ntAPPRIS P1 TSL 5 BASIC13.36□□□□□ -0.27
Sdc1P18828 Plekha4-207ENSMUST00000211227 2133 ntAPPRIS ALT2 TSL 1 (best) BASIC13.36□□□□□ -0.27
Sdc1P18828 Sox18-201ENSMUST00000054491 1620 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
Sdc1P18828 Rtn1-202ENSMUST00000078505 3629 ntTSL 1 (best) BASIC13.36□□□□□ -0.27
Sdc1P18828 Ifngr2-201ENSMUST00000023687 3254 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
Sdc1P18828 a-202ENSMUST00000109697 705 ntAPPRIS P1 TSL 5 BASIC13.36□□□□□ -0.27
Sdc1P18828 Rpusd3-204ENSMUST00000129047 1045 ntAPPRIS ALT2 TSL 1 (best) BASIC13.36□□□□□ -0.27
Sdc1P18828 Fam149b-201ENSMUST00000037698 924 ntTSL 1 (best) BASIC13.36□□□□□ -0.27
Sdc1P18828 Rpusd3-201ENSMUST00000060634 1224 ntTSL 1 (best) BASIC13.36□□□□□ -0.27
Sdc1P18828 Nelfa-201ENSMUST00000030993 2580 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
Sdc1P18828 1700001O22Rik-201ENSMUST00000050003 1672 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
Sdc1P18828 Medag-201ENSMUST00000093110 2953 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
Sdc1P18828 Phf21b-203ENSMUST00000159939 3639 ntAPPRIS P2 TSL 1 (best) BASIC13.36□□□□□ -0.27
Sdc1P18828 Med20-201ENSMUST00000024778 2054 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
Sdc1P18828 Nxnl1-202ENSMUST00000163659 2730 ntAPPRIS P1 TSL 2 BASIC13.36□□□□□ -0.27
Sdc1P18828 AC174678.1-201ENSMUST00000228007 2749 ntBASIC13.36□□□□□ -0.27
Sdc1P18828 Tulp3-201ENSMUST00000001562 3374 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
Sdc1P18828 Gldn-201ENSMUST00000056740 4658 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
Sdc1P18828 Rnf138-201ENSMUST00000052396 3110 ntAPPRIS P1 TSL 5 BASIC13.36□□□□□ -0.27
Sdc1P18828 Slc35f4-205ENSMUST00000146164 2480 ntTSL 1 (best) BASIC13.36□□□□□ -0.27
Sdc1P18828 Kmt5b-206ENSMUST00000113973 6130 ntAPPRIS ALT2 TSL 5 BASIC13.36□□□□□ -0.27
Sdc1P18828 Apmap-201ENSMUST00000046399 2235 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
Sdc1P18828 Grm6-204ENSMUST00000171427 4330 ntAPPRIS P1 TSL 5 BASIC13.36□□□□□ -0.27
Sdc1P18828 Dap-201ENSMUST00000044524 1555 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
Sdc1P18828 Htr7-202ENSMUST00000164639 3057 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
Sdc1P18828 Brd7-201ENSMUST00000034085 3625 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
Sdc1P18828 Zbtb46-205ENSMUST00000180222 2014 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
Sdc1P18828 Grin1os-201ENSMUST00000129723 2891 ntTSL 1 (best) BASIC13.35□□□□□ -0.27
Sdc1P18828 Fam151a-201ENSMUST00000047620 1923 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
Sdc1P18828 Senp6-202ENSMUST00000164859 3853 ntAPPRIS ALT2 TSL 1 (best) BASIC13.35□□□□□ -0.27
Sdc1P18828 Fam71a-201ENSMUST00000171798 2234 ntAPPRIS P1 BASIC13.35□□□□□ -0.27
Sdc1P18828 Prss53-202ENSMUST00000205300 1662 ntTSL 1 (best) BASIC13.35□□□□□ -0.27
Sdc1P18828 Fgf5-201ENSMUST00000031280 2501 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
Sdc1P18828 Sept6-203ENSMUST00000115239 1845 ntTSL 1 (best) BASIC13.35□□□□□ -0.27
Sdc1P18828 Trim45-202ENSMUST00000094048 1815 ntTSL 5 BASIC13.35□□□□□ -0.27
Sdc1P18828 2510002D24Rik-202ENSMUST00000123146 361 ntTSL 1 (best) BASIC13.35□□□□□ -0.27
Sdc1P18828 Ggnbp2-213ENSMUST00000172405 2950 ntAPPRIS P2 TSL 1 (best) BASIC13.35□□□□□ -0.27
Sdc1P18828 Gclm-206ENSMUST00000178826 1002 ntAPPRIS P1 TSL 5 BASIC13.35□□□□□ -0.27
Sdc1P18828 Gm45890-201ENSMUST00000212043 1026 ntTSL 5 BASIC13.35□□□□□ -0.27
Sdc1P18828 Rpl13-201ENSMUST00000000756 780 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
Sdc1P18828 Gm6139-201ENSMUST00000079261 882 ntBASIC13.35□□□□□ -0.27
Sdc1P18828 Safb-201ENSMUST00000095224 3106 ntAPPRIS P2 TSL 5 BASIC13.35□□□□□ -0.27
Sdc1P18828 Zbtb46-202ENSMUST00000087409 2577 ntTSL 1 (best) BASIC13.35□□□□□ -0.27
Sdc1P18828 2900052L18Rik-201ENSMUST00000139014 1588 ntTSL 1 (best) BASIC13.35□□□□□ -0.27
Sdc1P18828 Slc35g2-201ENSMUST00000093792 1590 ntAPPRIS P1 TSL 2 BASIC13.35□□□□□ -0.27
Sdc1P18828 Hdhd2-202ENSMUST00000097521 1716 ntTSL 1 (best) BASIC13.35□□□□□ -0.27
Sdc1P18828 P2rx2-201ENSMUST00000058016 1895 ntAPPRIS ALT2 TSL 1 (best) BASIC13.35□□□□□ -0.27
Sdc1P18828 Ddi2-201ENSMUST00000102484 9553 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
Sdc1P18828 Fgfr3-203ENSMUST00000114411 4225 ntAPPRIS ALT2 TSL 5 BASIC13.35□□□□□ -0.27
Sdc1P18828 Rsbn1-202ENSMUST00000068879 6712 ntAPPRIS P2 TSL 1 (best) BASIC13.35□□□□□ -0.27
Sdc1P18828 Pias3-201ENSMUST00000064900 2931 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
Sdc1P18828 Tmem184b-201ENSMUST00000074991 3361 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
Sdc1P18828 Suco-201ENSMUST00000048377 6327 ntAPPRIS P2 TSL 1 (best) BASIC13.35□□□□□ -0.27
Sdc1P18828 Bcat2-201ENSMUST00000033098 1772 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
Sdc1P18828 Mcrs1-201ENSMUST00000041190 1915 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
Sdc1P18828 Rlf-201ENSMUST00000056635 6242 ntAPPRIS P2 TSL 5 BASIC13.35□□□□□ -0.27
Sdc1P18828 Tmem116-204ENSMUST00000111795 2221 ntAPPRIS ALT2 TSL 1 (best) BASIC13.35□□□□□ -0.27
Sdc1P18828 Fam124a-201ENSMUST00000039064 3558 ntAPPRIS P1 TSL 5 BASIC13.35□□□□□ -0.27
Sdc1P18828 Steap2-205ENSMUST00000115427 3470 ntTSL 1 (best) BASIC13.34□□□□□ -0.27
Sdc1P18828 Sirpa-202ENSMUST00000099113 3342 ntTSL 3 BASIC13.34□□□□□ -0.27
Sdc1P18828 Chst14-202ENSMUST00000110837 1991 ntTSL 1 (best) BASIC13.34□□□□□ -0.27
Sdc1P18828 3110062M04Rik-202ENSMUST00000115006 1501 ntAPPRIS ALT2 TSL 1 (best) BASIC13.34□□□□□ -0.27
Sdc1P18828 Map6-203ENSMUST00000122101 3233 ntAPPRIS ALT2 TSL 1 (best) BASIC13.34□□□□□ -0.27
Sdc1P18828 Gnas-211ENSMUST00000109096 2465 ntTSL 1 (best) BASIC13.34□□□□□ -0.27
Sdc1P18828 Dlat-201ENSMUST00000034567 4035 ntAPPRIS P1 TSL 1 (best) BASIC13.34□□□□□ -0.27
Sdc1P18828 Mex3c-201ENSMUST00000091852 3738 ntAPPRIS P1 TSL 1 (best) BASIC13.34□□□□□ -0.27
Sdc1P18828 Cpne6-207ENSMUST00000171643 2016 ntAPPRIS P3 TSL 5 BASIC13.34□□□□□ -0.27
Sdc1P18828 Tns1-222ENSMUST00000212888 5643 ntAPPRIS ALT2 TSL 5 BASIC13.34□□□□□ -0.27
Sdc1P18828 Snx14-206ENSMUST00000173039 2970 ntTSL 5 BASIC13.34□□□□□ -0.27
Sdc1P18828 Agps-201ENSMUST00000047232 7359 ntAPPRIS P2 TSL 1 (best) BASIC13.34□□□□□ -0.27
Sdc1P18828 Pam-210ENSMUST00000161567 3630 ntAPPRIS ALT2 TSL 5 BASIC13.34□□□□□ -0.27
Sdc1P18828 Zfp202-203ENSMUST00000168832 3329 ntTSL 1 (best) BASIC13.34□□□□□ -0.27
Sdc1P18828 Tnfsf13-201ENSMUST00000018896 1407 ntAPPRIS P2 TSL 1 (best) BASIC13.34□□□□□ -0.27
Sdc1P18828 Cpxm1-201ENSMUST00000028897 2366 ntAPPRIS P1 TSL 1 (best) BASIC13.34□□□□□ -0.27
Sdc1P18828 Runx2-202ENSMUST00000113571 5898 ntAPPRIS P3 TSL 5 BASIC13.34□□□□□ -0.27
Sdc1P18828 Tmc6-202ENSMUST00000103025 1279 ntTSL 1 (best) BASIC13.34□□□□□ -0.27
Sdc1P18828 Gm6576-201ENSMUST00000169678 883 ntBASIC13.34□□□□□ -0.27
Sdc1P18828 Cox5b-204ENSMUST00000193210 865 ntAPPRIS P1 TSL 1 (best) BASIC13.34□□□□□ -0.27
Sdc1P18828 Izumo2-201ENSMUST00000085422 632 ntAPPRIS P1 TSL 1 (best) BASIC13.34□□□□□ -0.27
Sdc1P18828 Fgfr1op2-204ENSMUST00000111663 2880 ntTSL 1 (best) BASIC13.34□□□□□ -0.27
Sdc1P18828 Plpp7-201ENSMUST00000057423 1947 ntAPPRIS P1 TSL 1 (best) BASIC13.34□□□□□ -0.27
Sdc1P18828 Snx11-201ENSMUST00000021246 2551 ntAPPRIS P1 TSL 1 (best) BASIC13.34□□□□□ -0.27
Sdc1P18828 Gm45133-201ENSMUST00000207548 2773 ntBASIC13.34□□□□□ -0.27
Sdc1P18828 Srrm3-204ENSMUST00000144211 3932 ntAPPRIS P1 TSL 1 (best) BASIC13.34□□□□□ -0.27
Retrieved 100 of 76,532 protein–RNA pairs in 19.2 ms