Protein–RNA interactions for Protein: P18111

Cdx1, Homeobox protein CDX-1, mousemouse

Predictions only

Length 268 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cdx1P18111 Dnajb11-204ENSMUST00000166487 2534 ntAPPRIS P1 TSL 1 (best) BASIC13.13□□□□□ -0.31
Cdx1P18111 Sucla2-203ENSMUST00000160507 2229 ntAPPRIS P1 TSL 1 (best) BASIC13.13□□□□□ -0.31
Cdx1P18111 Esx1-201ENSMUST00000074698 1600 ntAPPRIS P2 TSL 1 (best) BASIC13.13□□□□□ -0.31
Cdx1P18111 K230015D01Rik-201ENSMUST00000211969 1516 ntBASIC13.13□□□□□ -0.31
Cdx1P18111 Pcdha5-201ENSMUST00000192168 5206 ntAPPRIS P1 TSL 1 (best) BASIC13.13□□□□□ -0.31
Cdx1P18111 Gatad2a-203ENSMUST00000177851 5007 ntAPPRIS ALT2 TSL 5 BASIC13.13□□□□□ -0.31
Cdx1P18111 Gxylt2-201ENSMUST00000032157 7658 ntAPPRIS P1 TSL 1 (best) BASIC13.13□□□□□ -0.31
Cdx1P18111 Git2-215ENSMUST00000178440 4944 ntTSL 5 BASIC13.13□□□□□ -0.31
Cdx1P18111 Git2-201ENSMUST00000043283 4938 ntTSL 1 (best) BASIC13.13□□□□□ -0.31
Cdx1P18111 Psmd4-202ENSMUST00000107237 1332 ntAPPRIS P3 TSL 1 (best) BASIC13.13□□□□□ -0.31
Cdx1P18111 1700066M21Rik-201ENSMUST00000042734 3008 ntAPPRIS P1 TSL 1 (best) BASIC13.13□□□□□ -0.31
Cdx1P18111 Sox13-205ENSMUST00000153799 3693 ntAPPRIS P2 TSL 1 (best) BASIC13.12□□□□□ -0.31
Cdx1P18111 Stk40-201ENSMUST00000094761 3492 ntAPPRIS P1 TSL 1 (best) BASIC13.12□□□□□ -0.31
Cdx1P18111 Acd-201ENSMUST00000042608 3154 ntAPPRIS P1 TSL 1 (best) BASIC13.12□□□□□ -0.31
Cdx1P18111 Synm-204ENSMUST00000208231 4457 ntAPPRIS ALT2 TSL 1 (best) BASIC13.12□□□□□ -0.31
Cdx1P18111 Srsf10-202ENSMUST00000097844 3055 ntAPPRIS ALT1 TSL 2 BASIC13.12□□□□□ -0.31
Cdx1P18111 Edn2-201ENSMUST00000030384 1462 ntAPPRIS P1 TSL 1 (best) BASIC13.12□□□□□ -0.31
Cdx1P18111 Clic1-201ENSMUST00000007257 1466 ntAPPRIS P1 TSL 1 (best) BASIC13.12□□□□□ -0.31
Cdx1P18111 Gm10676-201ENSMUST00000098778 3221 ntBASIC13.12□□□□□ -0.31
Cdx1P18111 Plekha8-202ENSMUST00000119706 6739 ntAPPRIS P1 TSL 2 BASIC13.12□□□□□ -0.31
Cdx1P18111 Rprd1b-207ENSMUST00000152452 1910 ntTSL 1 (best) BASIC13.12□□□□□ -0.31
Cdx1P18111 Thsd7a-202ENSMUST00000119581 5678 ntAPPRIS P2 TSL 5 BASIC13.12□□□□□ -0.31
Cdx1P18111 Nrn1-202ENSMUST00000122286 691 ntTSL 3 BASIC13.12□□□□□ -0.31
Cdx1P18111 4931413I07Rik-201ENSMUST00000173637 764 ntTSL 1 (best) BASIC13.12□□□□□ -0.31
Cdx1P18111 D330020A13Rik-201ENSMUST00000181956 1069 ntAPPRIS P1 BASIC13.12□□□□□ -0.31
Cdx1P18111 Gm9484-201ENSMUST00000195892 1159 ntBASIC13.12□□□□□ -0.31
Cdx1P18111 AC122465.1-201ENSMUST00000220813 1209 ntTSL 1 (best) BASIC13.12□□□□□ -0.31
Cdx1P18111 Tmem192-201ENSMUST00000026595 1122 ntAPPRIS P1 TSL 1 (best) BASIC13.12□□□□□ -0.31
Cdx1P18111 1700020N01Rik-201ENSMUST00000057341 1062 ntAPPRIS P1 TSL 1 (best) BASIC13.12□□□□□ -0.31
Cdx1P18111 Rex1bd-201ENSMUST00000075175 671 ntAPPRIS P2 TSL 1 (best) BASIC13.12□□□□□ -0.31
Cdx1P18111 Map4k5-202ENSMUST00000110567 4250 ntTSL 5 BASIC13.12□□□□□ -0.31
Cdx1P18111 Zc3h14-204ENSMUST00000110105 3514 ntAPPRIS P1 TSL 1 (best) BASIC13.12□□□□□ -0.31
Cdx1P18111 Dclk2-208ENSMUST00000194452 2066 ntTSL 1 (best) BASIC13.12□□□□□ -0.31
Cdx1P18111 Fam213a-201ENSMUST00000022317 1537 ntAPPRIS P3 TSL 1 (best) BASIC13.12□□□□□ -0.31
Cdx1P18111 Usp53-201ENSMUST00000090379 6185 ntAPPRIS P1 TSL 1 (best) BASIC13.12□□□□□ -0.31
Cdx1P18111 Dnajc7-201ENSMUST00000014339 2330 ntAPPRIS P1 TSL 1 (best) BASIC13.12□□□□□ -0.31
Cdx1P18111 Ruvbl2-205ENSMUST00000211214 2312 ntAPPRIS P1 TSL 1 (best) BASIC13.12□□□□□ -0.31
Cdx1P18111 Aqp2-201ENSMUST00000023752 1416 ntAPPRIS P1 TSL 1 (best) BASIC13.12□□□□□ -0.31
Cdx1P18111 Ppp1r37-201ENSMUST00000058444 3816 ntAPPRIS P1 TSL 1 (best) BASIC13.12□□□□□ -0.31
Cdx1P18111 Dmpk-203ENSMUST00000108474 2591 ntAPPRIS ALT2 TSL 1 (best) BASIC13.12□□□□□ -0.31
Cdx1P18111 Spon1-202ENSMUST00000084696 5201 ntTSL 1 (best) BASIC13.12□□□□□ -0.31
Cdx1P18111 Dlg5-202ENSMUST00000073687 7784 ntTSL 1 (best) BASIC13.12□□□□□ -0.31
Cdx1P18111 4930461C15Rik-201ENSMUST00000133622 1302 ntTSL 1 (best) BASIC13.12□□□□□ -0.31
Cdx1P18111 Notch3-201ENSMUST00000087723 8044 ntAPPRIS P1 TSL 1 (best) BASIC13.12□□□□□ -0.31
Cdx1P18111 Uvrag-201ENSMUST00000037968 5157 ntAPPRIS P1 TSL 1 (best) BASIC13.11□□□□□ -0.31
Cdx1P18111 Tfeb-201ENSMUST00000024786 2296 ntAPPRIS P3 TSL 1 (best) BASIC13.11□□□□□ -0.31
Cdx1P18111 Evpl-201ENSMUST00000037007 6384 ntAPPRIS P1 TSL 2 BASIC13.11□□□□□ -0.31
Cdx1P18111 Ccdc59-201ENSMUST00000020049 1813 ntAPPRIS P1 TSL 1 (best) BASIC13.11□□□□□ -0.31
Cdx1P18111 Tspan4-201ENSMUST00000026585 1466 ntAPPRIS P1 TSL 1 (best) BASIC13.11□□□□□ -0.31
Cdx1P18111 9930021J03Rik-204ENSMUST00000177155 6632 ntAPPRIS P1 TSL 5 BASIC13.11□□□□□ -0.31
Cdx1P18111 Shank3-201ENSMUST00000039074 7131 ntAPPRIS P2 TSL 1 (best) BASIC13.11□□□□□ -0.31
Cdx1P18111 Smim14-202ENSMUST00000121661 1056 ntAPPRIS P1 TSL 3 BASIC13.11□□□□□ -0.31
Cdx1P18111 Tpsb2-201ENSMUST00000069616 1081 ntAPPRIS P1 TSL 1 (best) BASIC13.11□□□□□ -0.31
Cdx1P18111 Gmppa-201ENSMUST00000037796 1539 ntAPPRIS P1 TSL 1 (best) BASIC13.11□□□□□ -0.31
Cdx1P18111 Mfsd4b3-201ENSMUST00000095749 1787 ntAPPRIS P1 TSL 1 (best) BASIC13.11□□□□□ -0.31
Cdx1P18111 Tle3-218ENSMUST00000178113 5205 ntTSL 5 BASIC13.11□□□□□ -0.31
Cdx1P18111 Tnfaip2-201ENSMUST00000102745 3762 ntAPPRIS P2 TSL 1 (best) BASIC13.11□□□□□ -0.31
Cdx1P18111 Scaf4-201ENSMUST00000039280 4165 ntAPPRIS P3 TSL 1 (best) BASIC13.11□□□□□ -0.31
Cdx1P18111 Kif26a-201ENSMUST00000128402 6918 ntAPPRIS P1 TSL 1 (best) BASIC13.11□□□□□ -0.31
Cdx1P18111 9130017K11Rik-202ENSMUST00000135670 3338 ntTSL 1 (best) BASIC13.11□□□□□ -0.31
Cdx1P18111 Sox13-201ENSMUST00000094551 1842 ntAPPRIS P2 TSL 1 (best) BASIC13.11□□□□□ -0.31
Cdx1P18111 Gjd2-201ENSMUST00000090275 2879 ntAPPRIS P1 TSL 1 (best) BASIC13.1□□□□□ -0.31
Cdx1P18111 Scamp3-201ENSMUST00000029684 1489 ntAPPRIS P3 TSL 1 (best) BASIC13.1□□□□□ -0.31
Cdx1P18111 Elf2-202ENSMUST00000091144 2366 ntTSL 5 BASIC13.1□□□□□ -0.31
Cdx1P18111 Fgf5-201ENSMUST00000031280 2501 ntAPPRIS P1 TSL 1 (best) BASIC13.1□□□□□ -0.31
Cdx1P18111 Rspry1-202ENSMUST00000121101 3092 ntTSL 1 (best) BASIC13.1□□□□□ -0.31
Cdx1P18111 Mef2d-204ENSMUST00000119251 3488 ntTSL 5 BASIC13.1□□□□□ -0.31
Cdx1P18111 Ola1-201ENSMUST00000028517 2175 ntAPPRIS P1 TSL 1 (best) BASIC13.1□□□□□ -0.31
Cdx1P18111 Slc9a3r1-201ENSMUST00000021077 1925 ntAPPRIS P1 TSL 1 (best) BASIC13.1□□□□□ -0.31
Cdx1P18111 Dcaf17-201ENSMUST00000064141 1905 ntAPPRIS P1 TSL 1 (best) BASIC13.1□□□□□ -0.31
Cdx1P18111 Pld2-203ENSMUST00000108557 3655 ntAPPRIS ALT2 TSL 1 (best) BASIC13.1□□□□□ -0.31
Cdx1P18111 Zpbp2-205ENSMUST00000107513 1240 ntAPPRIS ALT2 TSL 5 BASIC13.1□□□□□ -0.31
Cdx1P18111 Tnnt2-202ENSMUST00000112085 1076 ntAPPRIS ALT2 TSL 5 BASIC13.1□□□□□ -0.31
Cdx1P18111 Tnnt2-203ENSMUST00000112086 1094 ntAPPRIS ALT2 TSL 5 BASIC13.1□□□□□ -0.31
Cdx1P18111 Tnnt2-204ENSMUST00000112087 1112 ntAPPRIS ALT2 TSL 5 BASIC13.1□□□□□ -0.31
Cdx1P18111 Pdxdc1-203ENSMUST00000115803 1268 ntAPPRIS ALT2 TSL 5 BASIC13.1□□□□□ -0.31
Cdx1P18111 B430219N15Rik-201ENSMUST00000147230 835 ntTSL 2 BASIC13.1□□□□□ -0.31
Cdx1P18111 Tnnt2-206ENSMUST00000178854 1076 ntAPPRIS ALT2 TSL 5 BASIC13.1□□□□□ -0.31
Cdx1P18111 Tnnt2-211ENSMUST00000189355 1112 ntAPPRIS ALT2 TSL 5 BASIC13.1□□□□□ -0.31
Cdx1P18111 Tnnt2-212ENSMUST00000189732 1123 ntAPPRIS ALT2 TSL 5 BASIC13.1□□□□□ -0.31
Cdx1P18111 Gm42882-201ENSMUST00000201788 506 ntTSL 3 BASIC13.1□□□□□ -0.31
Cdx1P18111 Btg1-202ENSMUST00000218953 668 ntTSL 2 BASIC13.1□□□□□ -0.31
Cdx1P18111 Espn-202ENSMUST00000049305 1142 ntTSL 1 (best) BASIC13.1□□□□□ -0.31
Cdx1P18111 Rps28-201ENSMUST00000087342 392 ntAPPRIS P1 TSL 1 (best) BASIC13.1□□□□□ -0.31
Cdx1P18111 Ptch1-201ENSMUST00000021921 7725 ntAPPRIS P2 TSL 1 (best) BASIC13.1□□□□□ -0.31
Cdx1P18111 Pex5l-206ENSMUST00000108226 2632 ntAPPRIS ALT2 TSL 1 (best) BASIC13.1□□□□□ -0.31
Cdx1P18111 Gm6277-201ENSMUST00000180860 1839 ntTSL 1 (best) BASIC13.1□□□□□ -0.31
Cdx1P18111 Dnajb2-208ENSMUST00000188346 1823 ntAPPRIS P1 TSL 1 (best) BASIC13.1□□□□□ -0.31
Cdx1P18111 Gm16386-201ENSMUST00000181397 1423 ntTSL 1 (best) BASIC13.1□□□□□ -0.31
Cdx1P18111 Galk1-201ENSMUST00000021114 1406 ntAPPRIS P1 TSL 1 (best) BASIC13.1□□□□□ -0.31
Cdx1P18111 Nrg1-218ENSMUST00000209107 2972 ntAPPRIS ALT2 TSL 5 BASIC13.1□□□□□ -0.31
Cdx1P18111 Cct7-201ENSMUST00000032078 2441 ntAPPRIS P1 TSL 1 (best) BASIC13.1□□□□□ -0.31
Cdx1P18111 Ccno-201ENSMUST00000038404 1875 ntAPPRIS P1 TSL 1 (best) BASIC13.1□□□□□ -0.31
Cdx1P18111 Tnfsf14-201ENSMUST00000005976 1859 ntAPPRIS P1 TSL 1 (best) BASIC13.1□□□□□ -0.31
Cdx1P18111 Slc43a3-201ENSMUST00000090726 2583 ntAPPRIS P1 TSL 1 (best) BASIC13.1□□□□□ -0.31
Cdx1P18111 Vwa8-202ENSMUST00000227255 3406 ntAPPRIS ALT2 BASIC13.1□□□□□ -0.31
Cdx1P18111 Gas2-201ENSMUST00000051912 2181 ntAPPRIS P1 TSL 1 (best) BASIC13.1□□□□□ -0.31
Cdx1P18111 Dag1-203ENSMUST00000171412 4415 ntAPPRIS P1 TSL 1 (best) BASIC13.1□□□□□ -0.31
Cdx1P18111 Wipi1-201ENSMUST00000047186 3338 ntTSL 1 (best) BASIC13.1□□□□□ -0.31
Cdx1P18111 Osbpl1a-205ENSMUST00000119512 1947 ntTSL 1 (best) BASIC13.09□□□□□ -0.31
Retrieved 100 of 76,532 protein–RNA pairs in 26.5 ms