Protein–RNA interactions for Protein: P13705

Msh3, DNA mismatch repair protein Msh3, mousemouse

Predictions only

Length 1,091 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Msh3P13705 Alox12-202ENSMUST00000108574 2314 ntTSL 1 (best) BASIC17.84■□□□□ 0.45
Msh3P13705 Slco3a1-201ENSMUST00000026897 4589 ntAPPRIS P4 TSL 1 (best) BASIC17.84■□□□□ 0.45
Msh3P13705 Dag1-201ENSMUST00000080435 4364 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
Msh3P13705 Dmpk-203ENSMUST00000108474 2591 ntAPPRIS ALT2 TSL 1 (best) BASIC17.84■□□□□ 0.45
Msh3P13705 Pax8-201ENSMUST00000028355 2560 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
Msh3P13705 Pigs-201ENSMUST00000048073 2501 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.45
Msh3P13705 Rbl2-201ENSMUST00000034091 4925 ntAPPRIS P3 TSL 1 (best) BASIC17.83■□□□□ 0.45
Msh3P13705 Luc7l2-213ENSMUST00000163047 3141 ntTSL 1 (best) BASIC17.83■□□□□ 0.45
Msh3P13705 Shd-201ENSMUST00000044216 1546 ntAPPRIS ALT2 TSL 1 (best) BASIC17.83■□□□□ 0.45
Msh3P13705 Gm42473-201ENSMUST00000201056 2291 ntBASIC17.83■□□□□ 0.45
Msh3P13705 Atat1-214ENSMUST00000149277 1388 ntAPPRIS ALT2 TSL 1 (best) BASIC17.83■□□□□ 0.45
Msh3P13705 1700034J05Rik-202ENSMUST00000111622 2023 ntAPPRIS ALT2 TSL 1 (best) BASIC17.83■□□□□ 0.45
Msh3P13705 Srpx-202ENSMUST00000115543 1218 ntAPPRIS ALT2 TSL 1 (best) BASIC17.83■□□□□ 0.44
Msh3P13705 Srgn-205ENSMUST00000162161 694 ntAPPRIS P1 TSL 3 BASIC17.83■□□□□ 0.44
Msh3P13705 Lmo1-203ENSMUST00000208136 772 ntTSL 2 BASIC17.83■□□□□ 0.44
Msh3P13705 Hist1h2af-201ENSMUST00000073261 399 ntAPPRIS P1 BASIC17.83■□□□□ 0.44
Msh3P13705 Rap1gap-202ENSMUST00000097837 3168 ntAPPRIS ALT2 TSL 1 (best) BASIC17.83■□□□□ 0.44
Msh3P13705 Apeh-206ENSMUST00000193254 2518 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.44
Msh3P13705 Tubgcp4-203ENSMUST00000110658 4250 ntAPPRIS ALT1 TSL 1 (best) BASIC17.83■□□□□ 0.44
Msh3P13705 Kat2a-202ENSMUST00000103118 3046 ntAPPRIS P4 TSL 1 (best) BASIC17.83■□□□□ 0.44
Msh3P13705 Cant1-204ENSMUST00000106288 2873 ntAPPRIS P1 TSL 5 BASIC17.83■□□□□ 0.44
Msh3P13705 Crebbp-201ENSMUST00000023165 10820 ntAPPRIS P2 TSL 1 (best) BASIC17.83■□□□□ 0.44
Msh3P13705 Ppm1a-201ENSMUST00000021514 7668 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.44
Msh3P13705 Rnf13-205ENSMUST00000198214 2027 ntTSL 1 (best) BASIC17.82■□□□□ 0.44
Msh3P13705 T-201ENSMUST00000074667 2046 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
Msh3P13705 4933434E20Rik-209ENSMUST00000162114 1411 ntTSL 1 (best) BASIC17.82■□□□□ 0.44
Msh3P13705 Fads3-201ENSMUST00000115995 3269 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
Msh3P13705 Pdgfa-203ENSMUST00000110896 1363 ntAPPRIS P1 TSL 5 BASIC17.82■□□□□ 0.44
Msh3P13705 2810468N07Rik-201ENSMUST00000163493 1349 ntTSL 1 (best) BASIC17.82■□□□□ 0.44
Msh3P13705 Sytl1-202ENSMUST00000105908 1730 ntTSL 5 BASIC17.82■□□□□ 0.44
Msh3P13705 Gm27742-201ENSMUST00000184667 60 ntBASIC17.82■□□□□ 0.44
Msh3P13705 Mrps33-201ENSMUST00000031978 1107 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
Msh3P13705 Hist1h2ab-201ENSMUST00000078369 473 ntAPPRIS P1 BASIC17.82■□□□□ 0.44
Msh3P13705 Jdp2-202ENSMUST00000171754 1559 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
Msh3P13705 Mepce-201ENSMUST00000031740 3128 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
Msh3P13705 Ets1-201ENSMUST00000034534 5080 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
Msh3P13705 Aurka-202ENSMUST00000109139 1905 ntAPPRIS ALT2 TSL 1 (best) BASIC17.82■□□□□ 0.44
Msh3P13705 Aurka-201ENSMUST00000028997 1905 ntAPPRIS P3 TSL 1 (best) BASIC17.82■□□□□ 0.44
Msh3P13705 Cpq-201ENSMUST00000042167 1923 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
Msh3P13705 Rnf169-201ENSMUST00000080817 7147 ntAPPRIS P1 TSL 5 BASIC17.82■□□□□ 0.44
Msh3P13705 Gm14261-201ENSMUST00000145105 1429 ntTSL 1 (best) BASIC17.81■□□□□ 0.44
Msh3P13705 4933436I20Rik-201ENSMUST00000189405 1434 ntTSL 1 (best) BASIC17.81■□□□□ 0.44
Msh3P13705 Trmt2a-203ENSMUST00000115640 2367 ntAPPRIS ALT2 TSL 1 (best) BASIC17.81■□□□□ 0.44
Msh3P13705 Trim37-201ENSMUST00000041282 5632 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
Msh3P13705 Trim39-203ENSMUST00000113706 3204 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
Msh3P13705 Sap18-202ENSMUST00000111268 662 ntTSL 2 BASIC17.81■□□□□ 0.44
Msh3P13705 Gm16272-201ENSMUST00000128218 388 ntTSL 2 BASIC17.81■□□□□ 0.44
Msh3P13705 Hif3a-201ENSMUST00000037762 2206 ntAPPRIS P3 TSL 1 (best) BASIC17.81■□□□□ 0.44
Msh3P13705 Malsu1-203ENSMUST00000128616 2819 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
Msh3P13705 Taz-201ENSMUST00000069722 1851 ntAPPRIS P3 TSL 1 (best) BASIC17.81■□□□□ 0.44
Msh3P13705 Rnf146-202ENSMUST00000160144 4323 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
Msh3P13705 Kif7-202ENSMUST00000178048 4524 ntAPPRIS ALT2 TSL 1 (best) BASIC17.81■□□□□ 0.44
Msh3P13705 Gnao1-207ENSMUST00000138659 5526 ntTSL 1 (best) BASIC17.81■□□□□ 0.44
Msh3P13705 Dnm2-204ENSMUST00000165766 3063 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
Msh3P13705 Mir124-2hg-202ENSMUST00000186746 1368 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
Msh3P13705 Pofut1-203ENSMUST00000099192 1385 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
Msh3P13705 Traf2-202ENSMUST00000114234 2151 ntAPPRIS ALT2 TSL 5 BASIC17.8■□□□□ 0.44
Msh3P13705 Gm2694-204ENSMUST00000181898 1303 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
Msh3P13705 Gde1-201ENSMUST00000038791 1582 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
Msh3P13705 Bend5-201ENSMUST00000030274 1826 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
Msh3P13705 Aldh5a1-201ENSMUST00000037615 5647 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
Msh3P13705 Gm16181-201ENSMUST00000118793 567 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
Msh3P13705 Gm11729-201ENSMUST00000124901 713 ntTSL 3 BASIC17.8■□□□□ 0.44
Msh3P13705 Rab28-205ENSMUST00000202913 863 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
Msh3P13705 Zfp524-201ENSMUST00000086349 1142 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
Msh3P13705 Slc35a1-201ENSMUST00000029970 2039 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
Msh3P13705 Ptpre-207ENSMUST00000211140 5753 ntAPPRIS P3 TSL 1 (best) BASIC17.8■□□□□ 0.44
Msh3P13705 Ipo9-201ENSMUST00000041023 6247 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
Msh3P13705 Arid1a-205ENSMUST00000145664 8187 ntAPPRIS ALT2 TSL 2 BASIC17.8■□□□□ 0.44
Msh3P13705 Gm26904-201ENSMUST00000181301 1742 ntTSL 5 BASIC17.8■□□□□ 0.44
Msh3P13705 Zfp42-202ENSMUST00000209356 1744 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
Msh3P13705 Csnk2a2-203ENSMUST00000212214 6779 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
Msh3P13705 Mycl-201ENSMUST00000030407 3501 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
Msh3P13705 Parg-204ENSMUST00000164137 3013 ntTSL 5 BASIC17.8■□□□□ 0.44
Msh3P13705 Pld2-201ENSMUST00000018429 3659 ntAPPRIS P3 TSL 1 (best) BASIC17.79■□□□□ 0.44
Msh3P13705 Hebp2-201ENSMUST00000020000 2535 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
Msh3P13705 Zfp764-201ENSMUST00000059199 2508 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
Msh3P13705 Twf2-201ENSMUST00000024047 1596 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
Msh3P13705 Ulk1-201ENSMUST00000031490 5213 ntAPPRIS P3 TSL 1 (best) BASIC17.79■□□□□ 0.44
Msh3P13705 Rnf181-203ENSMUST00000114095 869 ntTSL 3 BASIC17.79■□□□□ 0.44
Msh3P13705 Sec61g-206ENSMUST00000166950 754 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
Msh3P13705 AC153794.1-201ENSMUST00000169148 126 ntBASIC17.79■□□□□ 0.44
Msh3P13705 Sec61g-207ENSMUST00000178855 779 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
Msh3P13705 Gm8349-201ENSMUST00000182720 1003 ntBASIC17.79■□□□□ 0.44
Msh3P13705 Gm7507-201ENSMUST00000183053 1008 ntBASIC17.79■□□□□ 0.44
Msh3P13705 Gm44973-201ENSMUST00000207050 1003 ntAPPRIS P1 TSL 3 BASIC17.79■□□□□ 0.44
Msh3P13705 Gm35154-202ENSMUST00000217008 1093 ntTSL 5 BASIC17.79■□□□□ 0.44
Msh3P13705 Ifi27l2a-201ENSMUST00000055071 463 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
Msh3P13705 4930465K10Rik-201ENSMUST00000056675 1238 ntBASIC17.79■□□□□ 0.44
Msh3P13705 Pym1-201ENSMUST00000065210 1156 ntAPPRIS ALT2 TSL 1 (best) BASIC17.79■□□□□ 0.44
Msh3P13705 Ppt1-202ENSMUST00000097902 1191 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
Msh3P13705 Inhbc-201ENSMUST00000026472 1859 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
Msh3P13705 Shroom3-211ENSMUST00000225438 5742 ntBASIC17.79■□□□□ 0.44
Msh3P13705 Mier2-212ENSMUST00000172158 1400 ntTSL 5 BASIC17.79■□□□□ 0.44
Msh3P13705 Mrps27-201ENSMUST00000052249 1849 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
Msh3P13705 Pth1r-204ENSMUST00000198865 2201 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
Msh3P13705 Cdc25a-201ENSMUST00000094324 3632 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
Msh3P13705 Ankib1-201ENSMUST00000043551 6426 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
Msh3P13705 Atxn7l2-203ENSMUST00000117784 2387 ntAPPRIS P2 TSL 1 (best) BASIC17.79■□□□□ 0.44
Msh3P13705 9530082P21Rik-202ENSMUST00000181291 1798 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
Retrieved 100 of 76,532 protein–RNA pairs in 24.2 ms