Protein–RNA interactions for Protein: P11087

Col1a1, Collagen alpha-1(I) chain, mousemouse

Predictions only

Length 1,453 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col1a1P11087 Ginm1-201ENSMUST00000039763 1557 ntAPPRIS P3 TSL 1 (best) BASIC18.87■□□□□ 0.61
Col1a1P11087 Hmgcl-201ENSMUST00000030432 1418 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
Col1a1P11087 Tfap2b-202ENSMUST00000064976 1946 ntTSL 1 (best) BASIC18.87■□□□□ 0.61
Col1a1P11087 Fam72a-201ENSMUST00000068613 2191 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
Col1a1P11087 Gemin7-204ENSMUST00000122055 609 ntAPPRIS P1 TSL 3 BASIC18.87■□□□□ 0.61
Col1a1P11087 Rpl8-201ENSMUST00000004072 862 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
Col1a1P11087 Cacfd1-205ENSMUST00000114007 2689 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
Col1a1P11087 Smpd4-221ENSMUST00000170996 1619 ntTSL 5 BASIC18.87■□□□□ 0.61
Col1a1P11087 Tmed1-201ENSMUST00000034698 1378 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
Col1a1P11087 Pacsin3-202ENSMUST00000059566 1867 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
Col1a1P11087 Zdhhc25-201ENSMUST00000066949 1368 ntAPPRIS P1 BASIC18.87■□□□□ 0.61
Col1a1P11087 Znrf3-201ENSMUST00000109867 6311 ntAPPRIS P3 TSL 5 BASIC18.87■□□□□ 0.61
Col1a1P11087 Slc30a5-205ENSMUST00000225922 2722 ntAPPRIS ALT2 BASIC18.87■□□□□ 0.61
Col1a1P11087 Fam189a1-201ENSMUST00000119118 4801 ntAPPRIS P1 TSL 5 BASIC18.87■□□□□ 0.61
Col1a1P11087 Matn4-201ENSMUST00000103103 2304 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
Col1a1P11087 4933434E20Rik-204ENSMUST00000159064 1344 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
Col1a1P11087 Elp6-205ENSMUST00000199592 1304 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
Col1a1P11087 Klhl5-204ENSMUST00000204097 3149 ntTSL 1 (best) BASIC18.86■□□□□ 0.61
Col1a1P11087 Selenok-201ENSMUST00000112268 1678 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
Col1a1P11087 Cenpb-201ENSMUST00000089510 4886 ntAPPRIS P1 BASIC18.86■□□□□ 0.61
Col1a1P11087 Rbpms-201ENSMUST00000033994 2375 ntTSL 1 (best) BASIC18.86■□□□□ 0.61
Col1a1P11087 1700051A21Rik-201ENSMUST00000147937 1516 ntTSL 5 BASIC18.86■□□□□ 0.61
Col1a1P11087 Txnl1-201ENSMUST00000025476 2558 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
Col1a1P11087 Gm11841-201ENSMUST00000117060 1963 ntBASIC18.86■□□□□ 0.61
Col1a1P11087 Cacng6-202ENSMUST00000183200 1977 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
Col1a1P11087 0610025J13Rik-201ENSMUST00000131324 652 ntTSL 1 (best) BASIC18.86■□□□□ 0.61
Col1a1P11087 Pcp2-203ENSMUST00000133459 470 ntAPPRIS ALT2 TSL 1 (best) BASIC18.86■□□□□ 0.61
Col1a1P11087 Smdt1-201ENSMUST00000023086 705 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
Col1a1P11087 Sbk2-201ENSMUST00000032598 1139 ntAPPRIS P1 TSL 3 BASIC18.86■□□□□ 0.61
Col1a1P11087 Gnptg-201ENSMUST00000038973 1234 ntAPPRIS P2 TSL 1 (best) BASIC18.86■□□□□ 0.61
Col1a1P11087 Pcp2-201ENSMUST00000004749 495 ntTSL 1 (best) BASIC18.86■□□□□ 0.61
Col1a1P11087 Klk15-201ENSMUST00000068625 845 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
Col1a1P11087 Wdr13-202ENSMUST00000115623 1749 ntAPPRIS P1 TSL 5 BASIC18.86■□□□□ 0.61
Col1a1P11087 A630072M18Rik-201ENSMUST00000190567 5410 ntBASIC18.86■□□□□ 0.61
Col1a1P11087 Gnao1-201ENSMUST00000034198 2948 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
Col1a1P11087 Iqcj-201ENSMUST00000063263 1579 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
Col1a1P11087 Stk33-203ENSMUST00000121378 1304 ntTSL 1 (best) BASIC18.86■□□□□ 0.61
Col1a1P11087 Gm5366-201ENSMUST00000215494 1338 ntBASIC18.86■□□□□ 0.61
Col1a1P11087 Fip1l1-203ENSMUST00000113535 1969 ntAPPRIS ALT2 TSL 1 (best) BASIC18.86■□□□□ 0.61
Col1a1P11087 D1Ertd622e-204ENSMUST00000153115 3495 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
Col1a1P11087 Frmd5-203ENSMUST00000121219 2262 ntTSL 1 (best) BASIC18.85■□□□□ 0.61
Col1a1P11087 Gpr161-202ENSMUST00000178700 1827 ntAPPRIS ALT2 TSL 1 (best) BASIC18.85■□□□□ 0.61
Col1a1P11087 Arhgef19-201ENSMUST00000006618 3414 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
Col1a1P11087 Prss53-201ENSMUST00000121394 2134 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
Col1a1P11087 Gm28308-201ENSMUST00000128102 752 ntAPPRIS P1 TSL 3 BASIC18.85■□□□□ 0.61
Col1a1P11087 Gm11508-201ENSMUST00000129337 440 ntTSL 2 BASIC18.85■□□□□ 0.61
Col1a1P11087 Tctn3-202ENSMUST00000132452 1271 ntAPPRIS ALT2 TSL 1 (best) BASIC18.85■□□□□ 0.61
Col1a1P11087 Ftl1-ps1-202ENSMUST00000222435 938 ntAPPRIS P1 BASIC18.85■□□□□ 0.61
Col1a1P11087 Tle4-202ENSMUST00000167776 4545 ntAPPRIS ALT1 TSL 5 BASIC18.85■□□□□ 0.61
Col1a1P11087 Pitx2-203ENSMUST00000106382 1757 ntTSL 1 (best) BASIC18.85■□□□□ 0.61
Col1a1P11087 Wipf1-202ENSMUST00000102679 2039 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
Col1a1P11087 Tmem81-202ENSMUST00000188789 1751 ntAPPRIS P1 BASIC18.84■□□□□ 0.61
Col1a1P11087 Gid8-201ENSMUST00000029090 1655 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
Col1a1P11087 Pbx4-201ENSMUST00000081503 1560 ntAPPRIS P1 TSL 5 BASIC18.84■□□□□ 0.61
Col1a1P11087 Zpbp2-204ENSMUST00000107511 1395 ntAPPRIS ALT2 TSL 1 (best) BASIC18.84■□□□□ 0.61
Col1a1P11087 Ccdc42-203ENSMUST00000154294 1384 ntAPPRIS P1 TSL 5 BASIC18.84■□□□□ 0.61
Col1a1P11087 Acp5-201ENSMUST00000069330 1356 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
Col1a1P11087 Gm15427-201ENSMUST00000117288 531 ntBASIC18.84■□□□□ 0.61
Col1a1P11087 Rpl18-ps1-201ENSMUST00000121555 525 ntBASIC18.84■□□□□ 0.61
Col1a1P11087 Gm15862-201ENSMUST00000146349 361 ntTSL 2 BASIC18.84■□□□□ 0.61
Col1a1P11087 Timm13-201ENSMUST00000020440 1225 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
Col1a1P11087 Hunk-201ENSMUST00000065856 5009 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
Col1a1P11087 Slc35c2-203ENSMUST00000109299 1926 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
Col1a1P11087 Ube4b-202ENSMUST00000103212 5626 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
Col1a1P11087 Npas3-203ENSMUST00000223057 2724 ntAPPRIS ALT2 TSL 5 BASIC18.84■□□□□ 0.61
Col1a1P11087 Yipf2-202ENSMUST00000078572 1894 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
Col1a1P11087 Rnf128-201ENSMUST00000113026 2750 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
Col1a1P11087 Gm21984-201ENSMUST00000123117 822 ntTSL 5 BASIC18.84■□□□□ 0.61
Col1a1P11087 5033428I22Rik-203ENSMUST00000210614 952 ntTSL 1 (best) BASIC18.84■□□□□ 0.61
Col1a1P11087 Pcna-ps2-201ENSMUST00000088040 1257 ntAPPRIS P1 BASIC18.84■□□□□ 0.61
Col1a1P11087 Zufsp-202ENSMUST00000218055 2180 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.61
Col1a1P11087 Slc26a10-205ENSMUST00000222911 3067 ntAPPRIS ALT2 TSL 5 BASIC18.83■□□□□ 0.61
Col1a1P11087 Dnajc9-201ENSMUST00000022345 1631 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.61
Col1a1P11087 Slc46a1-201ENSMUST00000001126 1978 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.61
Col1a1P11087 Gm9821-201ENSMUST00000178895 1953 ntAPPRIS P1 BASIC18.83■□□□□ 0.61
Col1a1P11087 R3hdm4-202ENSMUST00000171416 1543 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.61
Col1a1P11087 Gm42743-201ENSMUST00000051089 1511 ntTSL 1 (best) BASIC18.83■□□□□ 0.61
Col1a1P11087 Gm26676-201ENSMUST00000181877 2226 ntTSL 1 (best) BASIC18.83■□□□□ 0.61
Col1a1P11087 Il11ra1-204ENSMUST00000108042 1768 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.61
Col1a1P11087 Iqsec1-210ENSMUST00000212100 3500 ntTSL 5 BASIC18.83■□□□□ 0.61
Col1a1P11087 Lrrc24-202ENSMUST00000049956 1904 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.61
Col1a1P11087 Polr3e-203ENSMUST00000207481 2545 ntAPPRIS ALT2 TSL 1 (best) BASIC18.83■□□□□ 0.6
Col1a1P11087 Agk-201ENSMUST00000031977 2531 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
Col1a1P11087 Slc39a14-201ENSMUST00000022688 2098 ntAPPRIS ALT2 TSL 1 (best) BASIC18.83■□□□□ 0.6
Col1a1P11087 Ecel1-201ENSMUST00000027463 2695 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
Col1a1P11087 Il17re-203ENSMUST00000101065 1973 ntTSL 1 (best) BASIC18.83■□□□□ 0.6
Col1a1P11087 Hsf5-201ENSMUST00000093956 4158 ntAPPRIS P1 TSL 5 BASIC18.83■□□□□ 0.6
Col1a1P11087 Zglp1-201ENSMUST00000115494 1010 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
Col1a1P11087 Pantr2-201ENSMUST00000180589 463 ntTSL 3 BASIC18.83■□□□□ 0.6
Col1a1P11087 Gm37335-201ENSMUST00000192656 447 ntTSL 5 BASIC18.83■□□□□ 0.6
Col1a1P11087 Gm5312-201ENSMUST00000203728 547 ntBASIC18.83■□□□□ 0.6
Col1a1P11087 Cdpf1-201ENSMUST00000071876 997 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
Col1a1P11087 Itgb7-201ENSMUST00000001327 2674 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
Col1a1P11087 Psen2-203ENSMUST00000111105 1575 ntAPPRIS P2 TSL 5 BASIC18.82■□□□□ 0.6
Col1a1P11087 Gimap3-201ENSMUST00000038811 1968 ntAPPRIS P1 TSL 2 BASIC18.82■□□□□ 0.6
Col1a1P11087 Clns1a-201ENSMUST00000026506 1504 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
Col1a1P11087 Ssc4d-204ENSMUST00000111153 2745 ntAPPRIS P1 TSL 5 BASIC18.82■□□□□ 0.6
Col1a1P11087 Large2-215ENSMUST00000176810 2477 ntAPPRIS ALT2 TSL 5 BASIC18.82■□□□□ 0.6
Col1a1P11087 Gpr160-207ENSMUST00000166278 1689 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
Col1a1P11087 Runx2os2-201ENSMUST00000161664 818 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
Retrieved 100 of 76,532 protein–RNA pairs in 31.2 ms