Protein–RNA interactions for Protein: O54990

Prom1, Prominin-1, mousemouse

Predictions only

Length 867 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Prom1O54990 Il7-203ENSMUST00000192202 2057 ntTSL 1 (best) BASIC17.83■□□□□ 0.45
Prom1O54990 AC131586.3-201ENSMUST00000228355 1367 ntBASIC17.83■□□□□ 0.45
Prom1O54990 Tmco4-202ENSMUST00000050949 3318 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.44
Prom1O54990 4921511I17Rik-201ENSMUST00000220545 1341 ntTSL 1 (best) BASIC17.83■□□□□ 0.44
Prom1O54990 Nfe2l1-202ENSMUST00000107657 3869 ntAPPRIS P3 TSL 5 BASIC17.83■□□□□ 0.44
Prom1O54990 Erlin1-201ENSMUST00000071698 3228 ntAPPRIS P1 TSL 5 BASIC17.83■□□□□ 0.44
Prom1O54990 Gm14822-201ENSMUST00000122247 291 ntBASIC17.83■□□□□ 0.44
Prom1O54990 Gm16838-201ENSMUST00000144594 816 ntTSL 1 (best) BASIC17.83■□□□□ 0.44
Prom1O54990 Prss45-202ENSMUST00000146794 1208 ntAPPRIS ALT2 TSL 1 (best) BASIC17.83■□□□□ 0.44
Prom1O54990 Ankrd65-202ENSMUST00000165000 1140 ntAPPRIS ALT2 TSL 5 BASIC17.83■□□□□ 0.44
Prom1O54990 Nudt3-209ENSMUST00000176876 465 ntTSL 2 BASIC17.83■□□□□ 0.44
Prom1O54990 Gm18622-201ENSMUST00000219361 595 ntBASIC17.83■□□□□ 0.44
Prom1O54990 Nudt3-202ENSMUST00000062397 558 ntTSL 3 BASIC17.83■□□□□ 0.44
Prom1O54990 Ndufb6-201ENSMUST00000095128 659 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.44
Prom1O54990 Pecr-202ENSMUST00000097698 932 ntAPPRIS ALT2 TSL 1 (best) BASIC17.83■□□□□ 0.44
Prom1O54990 Gm26663-201ENSMUST00000181105 1882 ntTSL 1 (best) BASIC17.83■□□□□ 0.44
Prom1O54990 Chga-201ENSMUST00000021610 1883 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.44
Prom1O54990 2810474O19Rik-201ENSMUST00000046689 6066 ntAPPRIS P2 TSL 1 (best) BASIC17.83■□□□□ 0.44
Prom1O54990 4732440D04Rik-203ENSMUST00000191825 5428 ntBASIC17.83■□□□□ 0.44
Prom1O54990 Cgn-204ENSMUST00000155485 2361 ntTSL 2 BASIC17.83■□□□□ 0.44
Prom1O54990 Kifc3-203ENSMUST00000169748 3384 ntAPPRIS ALT2 TSL 1 (best) BASIC17.83■□□□□ 0.44
Prom1O54990 Smox-203ENSMUST00000110180 1617 ntTSL 1 (best) BASIC17.83■□□□□ 0.44
Prom1O54990 Dlgap4-205ENSMUST00000109567 4840 ntAPPRIS ALT2 TSL 5 BASIC17.83■□□□□ 0.44
Prom1O54990 Tmem163-203ENSMUST00000160616 2657 ntAPPRIS P1 TSL 2 BASIC17.83■□□□□ 0.44
Prom1O54990 Adgrl1-207ENSMUST00000141158 8181 ntTSL 1 (best) BASIC17.83■□□□□ 0.44
Prom1O54990 4933434E20Rik-203ENSMUST00000068798 1500 ntTSL 5 BASIC17.82■□□□□ 0.44
Prom1O54990 Zfp282-201ENSMUST00000061890 5573 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
Prom1O54990 Vsig10l-204ENSMUST00000203769 2473 ntAPPRIS P2 TSL 1 (best) BASIC17.82■□□□□ 0.44
Prom1O54990 Adgra2-201ENSMUST00000033876 5760 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
Prom1O54990 N6amt1-201ENSMUST00000054442 1884 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
Prom1O54990 Msantd3-202ENSMUST00000064807 1378 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
Prom1O54990 Gnb3-201ENSMUST00000024206 1846 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
Prom1O54990 Ptp4a2-201ENSMUST00000030578 3646 ntAPPRIS P1 TSL 5 BASIC17.82■□□□□ 0.44
Prom1O54990 Rmnd1-201ENSMUST00000042251 3139 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
Prom1O54990 Cspp1-203ENSMUST00000118263 2162 ntTSL 1 (best) BASIC17.82■□□□□ 0.44
Prom1O54990 Sufu-202ENSMUST00000111867 1747 ntAPPRIS ALT1 TSL 1 (best) BASIC17.82■□□□□ 0.44
Prom1O54990 Pigt-201ENSMUST00000103101 2562 ntAPPRIS P2 TSL 1 (best) BASIC17.82■□□□□ 0.44
Prom1O54990 Gm11455-201ENSMUST00000149285 733 ntTSL 1 (best) BASIC17.82■□□□□ 0.44
Prom1O54990 Gm5682-201ENSMUST00000173402 505 ntBASIC17.82■□□□□ 0.44
Prom1O54990 1190007I07Rik-202ENSMUST00000176200 586 ntAPPRIS P1 TSL 2 BASIC17.82■□□□□ 0.44
Prom1O54990 Flg-204ENSMUST00000178752 756 ntAPPRIS ALT2 BASIC17.82■□□□□ 0.44
Prom1O54990 1190007I07Rik-203ENSMUST00000183363 406 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
Prom1O54990 1700012D14Rik-201ENSMUST00000209597 605 ntTSL 3 BASIC17.82■□□□□ 0.44
Prom1O54990 1190007I07Rik-201ENSMUST00000079648 716 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
Prom1O54990 Sart1-201ENSMUST00000044207 5091 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
Prom1O54990 Snx8-204ENSMUST00000196130 2547 ntAPPRIS ALT2 TSL 1 (best) BASIC17.82■□□□□ 0.44
Prom1O54990 Fiz1-201ENSMUST00000077385 2546 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
Prom1O54990 Slc38a10-203ENSMUST00000076697 1672 ntAPPRIS ALT2 TSL 1 (best) BASIC17.82■□□□□ 0.44
Prom1O54990 Ppp2r1b-211ENSMUST00000176798 2074 ntAPPRIS ALT2 TSL 5 BASIC17.82■□□□□ 0.44
Prom1O54990 Mapkapk3-201ENSMUST00000035194 2816 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
Prom1O54990 Rara-202ENSMUST00000107473 3238 ntTSL 1 (best) BASIC17.82■□□□□ 0.44
Prom1O54990 Jade1-202ENSMUST00000163764 5584 ntTSL 1 (best) BASIC17.82■□□□□ 0.44
Prom1O54990 Ube2z-201ENSMUST00000100528 3997 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
Prom1O54990 Tubb4b-201ENSMUST00000043584 1598 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
Prom1O54990 Slc5a10-201ENSMUST00000051552 2261 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
Prom1O54990 Slc25a23-201ENSMUST00000040280 3362 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
Prom1O54990 Brpf1-204ENSMUST00000113122 4773 ntAPPRIS ALT2 TSL 5 BASIC17.82■□□□□ 0.44
Prom1O54990 Casq1-201ENSMUST00000003554 1847 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
Prom1O54990 Mapk7-203ENSMUST00000108714 3069 ntTSL 1 (best) BASIC17.81■□□□□ 0.44
Prom1O54990 Atp11a-202ENSMUST00000091237 7443 ntAPPRIS P3 TSL 1 (best) BASIC17.81■□□□□ 0.44
Prom1O54990 1700029H14Rik-203ENSMUST00000134023 1319 ntAPPRIS ALT2 TSL 1 (best) BASIC17.81■□□□□ 0.44
Prom1O54990 Antxr1-201ENSMUST00000042025 5253 ntAPPRIS P2 TSL 1 (best) BASIC17.81■□□□□ 0.44
Prom1O54990 Rev1-201ENSMUST00000027251 4262 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
Prom1O54990 Col13a1-204ENSMUST00000105453 2935 ntTSL 2 BASIC17.81■□□□□ 0.44
Prom1O54990 Slc22a16-202ENSMUST00000078314 2269 ntAPPRIS P2 TSL 1 (best) BASIC17.81■□□□□ 0.44
Prom1O54990 Utp3-201ENSMUST00000090413 1629 ntAPPRIS P1 BASIC17.81■□□□□ 0.44
Prom1O54990 Gm7222-201ENSMUST00000117512 906 ntBASIC17.81■□□□□ 0.44
Prom1O54990 E530001F21Rik-201ENSMUST00000120991 730 ntBASIC17.81■□□□□ 0.44
Prom1O54990 Retsat-204ENSMUST00000176168 1203 ntTSL 5 BASIC17.81■□□□□ 0.44
Prom1O54990 Gm26768-201ENSMUST00000181097 966 ntTSL 5 BASIC17.81■□□□□ 0.44
Prom1O54990 Mir6404-201ENSMUST00000183699 94 ntBASIC17.81■□□□□ 0.44
Prom1O54990 Gm10419-203ENSMUST00000197854 653 ntTSL 5 BASIC17.81■□□□□ 0.44
Prom1O54990 Stard3nl-209ENSMUST00000221380 1268 ntTSL 5 BASIC17.81■□□□□ 0.44
Prom1O54990 Gnmt-201ENSMUST00000002846 1035 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
Prom1O54990 Tnp2-201ENSMUST00000051297 549 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
Prom1O54990 Rnf7-202ENSMUST00000071301 334 ntTSL 2 BASIC17.81■□□□□ 0.44
Prom1O54990 Vegfa-201ENSMUST00000024747 2765 ntTSL 1 (best) BASIC17.81■□□□□ 0.44
Prom1O54990 Nkpd1-201ENSMUST00000078908 2753 ntAPPRIS P2 TSL 1 (best) BASIC17.81■□□□□ 0.44
Prom1O54990 Agpat3-203ENSMUST00000105388 3681 ntAPPRIS P1 TSL 5 BASIC17.81■□□□□ 0.44
Prom1O54990 Gm45844-204ENSMUST00000209833 1524 ntAPPRIS ALT2 TSL 5 BASIC17.81■□□□□ 0.44
Prom1O54990 Dclk2-208ENSMUST00000194452 2066 ntTSL 1 (best) BASIC17.81■□□□□ 0.44
Prom1O54990 Rab6a-201ENSMUST00000032946 3214 ntAPPRIS P3 TSL 1 (best) BASIC17.81■□□□□ 0.44
Prom1O54990 Pak1ip1-201ENSMUST00000046951 1722 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
Prom1O54990 Lmo4-202ENSMUST00000121112 1447 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
Prom1O54990 Ythdf3-201ENSMUST00000108345 5102 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
Prom1O54990 Zswim8-208ENSMUST00000224751 5951 ntAPPRIS ALT2 BASIC17.81■□□□□ 0.44
Prom1O54990 Trim31-201ENSMUST00000078438 2257 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
Prom1O54990 Klhdc10-201ENSMUST00000068240 3951 ntTSL 1 (best) BASIC17.81■□□□□ 0.44
Prom1O54990 Sh3bp1-201ENSMUST00000001226 2510 ntTSL 5 BASIC17.8■□□□□ 0.44
Prom1O54990 Cxcl10-202ENSMUST00000118006 1353 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
Prom1O54990 Tatdn2-202ENSMUST00000113022 2416 ntAPPRIS ALT2 TSL 1 (best) BASIC17.8■□□□□ 0.44
Prom1O54990 Ercc6l2-202ENSMUST00000021926 1592 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
Prom1O54990 Hsf5-201ENSMUST00000093956 4158 ntAPPRIS P1 TSL 5 BASIC17.8■□□□□ 0.44
Prom1O54990 Gm13849-201ENSMUST00000153328 835 ntTSL 5 BASIC17.8■□□□□ 0.44
Prom1O54990 Gm25911-201ENSMUST00000157621 56 ntBASIC17.8■□□□□ 0.44
Prom1O54990 AC225888.1-201ENSMUST00000227184 728 ntBASIC17.8■□□□□ 0.44
Prom1O54990 Atp5o-201ENSMUST00000023677 838 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
Prom1O54990 Ndufs2-202ENSMUST00000111318 1545 ntTSL 5 BASIC17.8■□□□□ 0.44
Prom1O54990 Gm16976-202ENSMUST00000127408 1515 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
Prom1O54990 Ntn1-201ENSMUST00000021284 5738 ntAPPRIS P1 TSL 5 BASIC17.8■□□□□ 0.44
Retrieved 100 of 76,532 protein–RNA pairs in 26.1 ms