Protein–RNA interactions for Protein: O35600

Abca4, Retinal-specific ATP-binding cassette transporter, mousemouse

Predictions only

Length 2,310 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Abca4O35600 A730089K16Rik-201ENSMUST00000194526 2427 ntBASIC15.18■□□□□ 0.02
Abca4O35600 Gnptab-201ENSMUST00000020251 5390 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
Abca4O35600 Ran-201ENSMUST00000031383 2377 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
Abca4O35600 Layn-201ENSMUST00000098782 1786 ntAPPRIS P2 TSL 5 BASIC15.18■□□□□ 0.02
Abca4O35600 Atxn2-201ENSMUST00000051950 4472 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
Abca4O35600 Mfsd6-205ENSMUST00000156876 4932 ntAPPRIS P4 TSL 5 BASIC15.18■□□□□ 0.02
Abca4O35600 Yipf2-201ENSMUST00000034700 2174 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
Abca4O35600 Gm11555-202ENSMUST00000104929 638 ntAPPRIS P1 BASIC15.18■□□□□ 0.02
Abca4O35600 Gm11453-201ENSMUST00000117318 1007 ntBASIC15.18■□□□□ 0.02
Abca4O35600 1700060J05Rik-201ENSMUST00000138377 1060 ntTSL 1 (best) BASIC15.18■□□□□ 0.02
Abca4O35600 5430416N02Rik-202ENSMUST00000181873 626 ntTSL 1 (best) BASIC15.18■□□□□ 0.02
Abca4O35600 Cabp1-201ENSMUST00000031519 1370 ntAPPRIS P3 TSL 1 (best) BASIC15.18■□□□□ 0.02
Abca4O35600 Sfrp2-201ENSMUST00000029625 2003 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
Abca4O35600 Epc2-201ENSMUST00000092123 4697 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
Abca4O35600 Pdx1-201ENSMUST00000085591 2158 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
Abca4O35600 9530068E07Rik-202ENSMUST00000109057 2472 ntAPPRIS ALT2 TSL 1 (best) BASIC15.18■□□□□ 0.02
Abca4O35600 Trnt1-202ENSMUST00000113247 1934 ntTSL 1 (best) BASIC15.18■□□□□ 0.02
Abca4O35600 Plpp7-201ENSMUST00000057423 1947 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
Abca4O35600 Unc5b-201ENSMUST00000077925 5869 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
Abca4O35600 Mir7684-201ENSMUST00000183858 60 ntBASIC15.17■□□□□ 0.02
Abca4O35600 Gm34933-201ENSMUST00000203245 1067 ntTSL 5 BASIC15.17■□□□□ 0.02
Abca4O35600 Chp2-201ENSMUST00000033152 1456 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
Abca4O35600 D730003I15Rik-202ENSMUST00000194375 1667 ntBASIC15.17■□□□□ 0.02
Abca4O35600 Gm38318-201ENSMUST00000195769 1706 ntBASIC15.17■□□□□ 0.02
Abca4O35600 Pimreg-201ENSMUST00000021164 1513 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
Abca4O35600 Scube1-202ENSMUST00000043634 5161 ntAPPRIS ALT2 TSL 1 (best) BASIC15.17■□□□□ 0.02
Abca4O35600 Pacsin3-202ENSMUST00000059566 1867 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
Abca4O35600 Tuba3b-201ENSMUST00000087445 1775 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
Abca4O35600 Cryba4-202ENSMUST00000112383 754 ntTSL 1 (best) BASIC15.17■□□□□ 0.02
Abca4O35600 9130230N09Rik-201ENSMUST00000174568 663 ntTSL 3 BASIC15.17■□□□□ 0.02
Abca4O35600 Zfp930-203ENSMUST00000212312 493 ntTSL 2 BASIC15.17■□□□□ 0.02
Abca4O35600 Gm10244-201ENSMUST00000090237 830 ntTSL 1 (best) BASIC15.17■□□□□ 0.02
Abca4O35600 0610040J01Rik-201ENSMUST00000081747 2008 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
Abca4O35600 Slc38a10-202ENSMUST00000053692 1947 ntAPPRIS ALT2 TSL 1 (best) BASIC15.17■□□□□ 0.02
Abca4O35600 Rpap3-201ENSMUST00000023104 2260 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
Abca4O35600 AI846148-201ENSMUST00000025924 3183 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
Abca4O35600 Rd3-201ENSMUST00000175680 1969 ntTSL 1 (best) BASIC15.17■□□□□ 0.02
Abca4O35600 Zscan12-201ENSMUST00000053293 2270 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
Abca4O35600 Mchr1-201ENSMUST00000166855 2188 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
Abca4O35600 Tssc4-206ENSMUST00000177841 1364 ntAPPRIS P1 TSL 2 BASIC15.16■□□□□ 0.02
Abca4O35600 Mff-211ENSMUST00000161648 1715 ntTSL 5 BASIC15.16■□□□□ 0.02
Abca4O35600 Negr1-201ENSMUST00000041425 2095 ntTSL 1 (best) BASIC15.16■□□□□ 0.02
Abca4O35600 Serpinf1-202ENSMUST00000125982 605 ntTSL 1 (best) BASIC15.16■□□□□ 0.02
Abca4O35600 AY702102-202ENSMUST00000194651 1173 ntBASIC15.16■□□□□ 0.02
Abca4O35600 AC121788.1-202ENSMUST00000218801 871 ntTSL 5 BASIC15.16■□□□□ 0.02
Abca4O35600 3830406C13Rik-207ENSMUST00000223927 1010 ntBASIC15.16■□□□□ 0.02
Abca4O35600 Coq6-201ENSMUST00000021661 1602 ntAPPRIS P2 TSL 1 (best) BASIC15.16■□□□□ 0.02
Abca4O35600 Podxl2-201ENSMUST00000038409 1994 ntAPPRIS P3 TSL 1 (best) BASIC15.16■□□□□ 0.02
Abca4O35600 Mfng-201ENSMUST00000018313 1865 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
Abca4O35600 Mycbpap-201ENSMUST00000040692 1512 ntTSL 1 (best) BASIC15.16■□□□□ 0.02
Abca4O35600 Mbp-201ENSMUST00000047865 2492 ntTSL 1 (best) BASIC15.16■□□□□ 0.02
Abca4O35600 Gm16845-201ENSMUST00000180419 1415 ntTSL 1 (best) BASIC15.16■□□□□ 0.02
Abca4O35600 Zfp821-203ENSMUST00000212000 2081 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
Abca4O35600 Gm35558-201ENSMUST00000222675 2219 ntBASIC15.16■□□□□ 0.02
Abca4O35600 Sart1-201ENSMUST00000044207 5091 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
Abca4O35600 Cul4a-201ENSMUST00000016680 3728 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
Abca4O35600 Zfp768-201ENSMUST00000060783 2356 ntAPPRIS P2 TSL 1 (best) BASIC15.16■□□□□ 0.02
Abca4O35600 Alx1-204ENSMUST00000217946 1542 ntTSL 5 BASIC15.16■□□□□ 0.02
Abca4O35600 Ggnbp1-201ENSMUST00000053683 1525 ntAPPRIS P3 TSL 1 (best) BASIC15.16■□□□□ 0.02
Abca4O35600 Gm15222-201ENSMUST00000127359 344 ntTSL 3 BASIC15.16■□□□□ 0.02
Abca4O35600 Letm2-213ENSMUST00000211422 738 ntTSL 5 BASIC15.16■□□□□ 0.02
Abca4O35600 1700080E11Rik-201ENSMUST00000035180 883 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
Abca4O35600 Emd-203ENSMUST00000096424 896 ntTSL 5 BASIC15.16■□□□□ 0.02
Abca4O35600 1700113H08Rik-201ENSMUST00000169849 1332 ntAPPRIS P1 TSL 5 BASIC15.16■□□□□ 0.02
Abca4O35600 Psmb10-201ENSMUST00000034369 1311 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
Abca4O35600 Metrnl-202ENSMUST00000106089 1101 ntAPPRIS ALT2 TSL 5 BASIC15.15■□□□□ 0.02
Abca4O35600 Clnkos-201ENSMUST00000114080 439 ntTSL 1 (best) BASIC15.15■□□□□ 0.02
Abca4O35600 Rerg-203ENSMUST00000119610 890 ntTSL 3 BASIC15.15■□□□□ 0.02
Abca4O35600 Hoga1-204ENSMUST00000172244 631 ntTSL 5 BASIC15.15■□□□□ 0.02
Abca4O35600 P2ry2-202ENSMUST00000178340 2137 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
Abca4O35600 Gsdmcl2-204ENSMUST00000186026 736 ntBASIC15.15■□□□□ 0.02
Abca4O35600 Gsdmcl1-202ENSMUST00000190937 735 ntBASIC15.15■□□□□ 0.02
Abca4O35600 Gm43661-201ENSMUST00000199099 687 ntTSL 3 BASIC15.15■□□□□ 0.02
Abca4O35600 Vmn2r-ps89-201ENSMUST00000209195 1010 ntBASIC15.15■□□□□ 0.02
Abca4O35600 Prss29-201ENSMUST00000024993 1178 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
Abca4O35600 Gm13294-201ENSMUST00000121757 1330 ntBASIC15.15■□□□□ 0.02
Abca4O35600 Slc35b2-202ENSMUST00000223987 1766 ntBASIC15.15■□□□□ 0.02
Abca4O35600 9530059O14Rik-202ENSMUST00000181682 2093 ntTSL 1 (best) BASIC15.15■□□□□ 0.02
Abca4O35600 Cndp2-201ENSMUST00000025546 2050 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
Abca4O35600 Arhgef9-216ENSMUST00000197206 2227 ntTSL 5 BASIC15.15■□□□□ 0.02
Abca4O35600 Fam109a-201ENSMUST00000056654 2368 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
Abca4O35600 Kcnc3-207ENSMUST00000209177 2960 ntAPPRIS ALT2 TSL 5 BASIC15.15■□□□□ 0.02
Abca4O35600 Dnaja4-202ENSMUST00000120452 1827 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
Abca4O35600 Bfsp2-201ENSMUST00000124310 1662 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
Abca4O35600 Rom1-201ENSMUST00000096242 1526 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
Abca4O35600 Gm8344-201ENSMUST00000119813 856 ntBASIC15.15■□□□□ 0.02
Abca4O35600 AC132863.2-201ENSMUST00000226643 799 ntBASIC15.15■□□□□ 0.02
Abca4O35600 AW047730-202ENSMUST00000181406 2579 ntTSL 1 (best) BASIC15.15■□□□□ 0.02
Abca4O35600 Ext2-212ENSMUST00000184931 2629 ntTSL 1 (best) BASIC15.15■□□□□ 0.02
Abca4O35600 Nab2-201ENSMUST00000026469 2582 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
Abca4O35600 Commd10-201ENSMUST00000049388 1561 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
Abca4O35600 Rsu1-202ENSMUST00000114791 1604 ntTSL 5 BASIC15.14■□□□□ 0.01
Abca4O35600 Shank1-203ENSMUST00000107938 9826 ntAPPRIS P2 TSL 5 BASIC15.14■□□□□ 0.01
Abca4O35600 Gm3054-201ENSMUST00000111075 265 ntTSL 5 BASIC15.14■□□□□ 0.01
Abca4O35600 Gsg1l2-202ENSMUST00000181566 1158 ntAPPRIS P1 TSL 5 BASIC15.14■□□□□ 0.01
Abca4O35600 Irs3-202ENSMUST00000196511 1281 ntAPPRIS ALT2 TSL 1 (best) BASIC15.14■□□□□ 0.01
Abca4O35600 Gm9945-201ENSMUST00000067523 932 ntAPPRIS P1 BASIC15.14■□□□□ 0.01
Abca4O35600 Abi1-215ENSMUST00000178908 2239 ntAPPRIS ALT1 TSL 5 BASIC15.14■□□□□ 0.01
Abca4O35600 Stk33-201ENSMUST00000090414 2221 ntAPPRIS P1 TSL 5 BASIC15.14■□□□□ 0.01
Abca4O35600 Relb-202ENSMUST00000094762 2209 ntAPPRIS P3 TSL 1 (best) BASIC15.14■□□□□ 0.01
Retrieved 100 of 76,532 protein–RNA pairs in 20.4 ms