Protein–RNA interactions for Protein: B1AR17

Chd3, Chromodomain helicase DNA-binding protein 3, mousemouse

Predictions only

Length 2,055 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Chd3B1AR17 Agfg1-204ENSMUST00000186302 2352 ntAPPRIS ALT1 TSL 5 BASIC15.82■□□□□ 0.12
Chd3B1AR17 Mis18bp1-208ENSMUST00000222244 2053 ntTSL 1 (best) BASIC15.82■□□□□ 0.12
Chd3B1AR17 Serinc2-203ENSMUST00000122374 1881 ntAPPRIS ALT2 TSL 1 (best) BASIC15.82■□□□□ 0.12
Chd3B1AR17 Mir124-2hg-202ENSMUST00000186746 1368 ntTSL 1 (best) BASIC15.82■□□□□ 0.12
Chd3B1AR17 Park7-203ENSMUST00000105674 937 ntAPPRIS P1 TSL 5 BASIC15.82■□□□□ 0.12
Chd3B1AR17 Gm21887-203ENSMUST00000180251 531 ntAPPRIS P5 TSL 5 BASIC15.82■□□□□ 0.12
Chd3B1AR17 Rps13-ps1-201ENSMUST00000183478 538 ntBASIC15.82■□□□□ 0.12
Chd3B1AR17 Gm33054-201ENSMUST00000216588 313 ntTSL 5 BASIC15.82■□□□□ 0.12
Chd3B1AR17 Gm6296-201ENSMUST00000222599 943 ntBASIC15.82■□□□□ 0.12
Chd3B1AR17 Mrps18a-201ENSMUST00000024763 884 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
Chd3B1AR17 Gm10190-201ENSMUST00000086549 324 ntAPPRIS P1 BASIC15.82■□□□□ 0.12
Chd3B1AR17 March8-202ENSMUST00000101032 4611 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
Chd3B1AR17 Ube2w-201ENSMUST00000117146 2181 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
Chd3B1AR17 Gm26608-201ENSMUST00000180740 1954 ntTSL 1 (best) BASIC15.82■□□□□ 0.12
Chd3B1AR17 Zic3-202ENSMUST00000088629 1951 ntTSL 1 (best) BASIC15.82■□□□□ 0.12
Chd3B1AR17 Nectin1-201ENSMUST00000034510 5653 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
Chd3B1AR17 Slc11a1-201ENSMUST00000027368 2315 ntAPPRIS P2 TSL 1 (best) BASIC15.82■□□□□ 0.12
Chd3B1AR17 Gm16194-203ENSMUST00000141239 362 ntTSL 3 BASIC15.82■□□□□ 0.12
Chd3B1AR17 Tmem255b-201ENSMUST00000167071 1138 ntTSL 1 (best) BASIC15.82■□□□□ 0.12
Chd3B1AR17 Nagpa-201ENSMUST00000023911 2143 ntAPPRIS P2 TSL 1 (best) BASIC15.82■□□□□ 0.12
Chd3B1AR17 A930016O22Rik-201ENSMUST00000047020 1214 ntTSL 2 BASIC15.82■□□□□ 0.12
Chd3B1AR17 Wnt10b-206ENSMUST00000228546 2709 ntBASIC15.82■□□□□ 0.12
Chd3B1AR17 Zc3hav1l-201ENSMUST00000058524 6536 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
Chd3B1AR17 Fam46c-201ENSMUST00000061455 5640 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
Chd3B1AR17 Cant1-204ENSMUST00000106288 2873 ntAPPRIS P1 TSL 5 BASIC15.81■□□□□ 0.12
Chd3B1AR17 Dguok-202ENSMUST00000113888 1007 ntTSL 1 (best) BASIC15.81■□□□□ 0.12
Chd3B1AR17 Dguok-201ENSMUST00000014698 1107 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
Chd3B1AR17 Gm7230-201ENSMUST00000173026 815 ntBASIC15.81■□□□□ 0.12
Chd3B1AR17 Washc3-203ENSMUST00000182183 838 ntAPPRIS ALT2 TSL 2 BASIC15.81■□□□□ 0.12
Chd3B1AR17 AC160338.1-201ENSMUST00000214232 705 ntBASIC15.81■□□□□ 0.12
Chd3B1AR17 Ndufb7-201ENSMUST00000036996 623 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
Chd3B1AR17 Mtus2-201ENSMUST00000071878 1211 ntTSL 1 (best) BASIC15.81■□□□□ 0.12
Chd3B1AR17 Cwh43-201ENSMUST00000031040 2716 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
Chd3B1AR17 Traf2-202ENSMUST00000114234 2151 ntAPPRIS ALT2 TSL 5 BASIC15.81■□□□□ 0.12
Chd3B1AR17 Dlx3-201ENSMUST00000092768 2607 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
Chd3B1AR17 Nptx2-201ENSMUST00000071782 2536 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
Chd3B1AR17 Ankra2-204ENSMUST00000150352 2217 ntTSL 1 (best) BASIC15.81■□□□□ 0.12
Chd3B1AR17 Sh3yl1-201ENSMUST00000020997 1750 ntAPPRIS P3 TSL 1 (best) BASIC15.81■□□□□ 0.12
Chd3B1AR17 Pole4-201ENSMUST00000095786 1769 ntAPPRIS P2 TSL 1 (best) BASIC15.81■□□□□ 0.12
Chd3B1AR17 Ebf1-203ENSMUST00000109268 2864 ntAPPRIS ALT1 TSL 5 BASIC15.8■□□□□ 0.12
Chd3B1AR17 Rragd-203ENSMUST00000098190 5008 ntAPPRIS P1 TSL 2 BASIC15.8■□□□□ 0.12
Chd3B1AR17 Mycs-201ENSMUST00000058404 2368 ntAPPRIS P1 BASIC15.8■□□□□ 0.12
Chd3B1AR17 Ankrd65-202ENSMUST00000165000 1140 ntAPPRIS ALT2 TSL 5 BASIC15.8■□□□□ 0.12
Chd3B1AR17 Gm9449-201ENSMUST00000207265 1011 ntBASIC15.8■□□□□ 0.12
Chd3B1AR17 Gm18195-201ENSMUST00000207604 706 ntBASIC15.8■□□□□ 0.12
Chd3B1AR17 AC154757.1-201ENSMUST00000228289 336 ntBASIC15.8■□□□□ 0.12
Chd3B1AR17 Cdkn1a-201ENSMUST00000023829 1910 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
Chd3B1AR17 A230103J11Rik-202ENSMUST00000156084 2086 ntTSL 1 (best) BASIC15.8■□□□□ 0.12
Chd3B1AR17 5730480H06Rik-205ENSMUST00000196950 3300 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
Chd3B1AR17 Snupn-201ENSMUST00000068856 1391 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
Chd3B1AR17 Sh2b1-202ENSMUST00000205340 3366 ntAPPRIS ALT2 TSL 1 (best) BASIC15.8■□□□□ 0.12
Chd3B1AR17 Tead3-205ENSMUST00000154873 2775 ntAPPRIS ALT2 TSL 1 (best) BASIC15.8■□□□□ 0.12
Chd3B1AR17 Grk3-203ENSMUST00000197776 1570 ntTSL 1 (best) BASIC15.8■□□□□ 0.12
Chd3B1AR17 Susd1-201ENSMUST00000040166 3295 ntAPPRIS P2 TSL 1 (best) BASIC15.8■□□□□ 0.12
Chd3B1AR17 Gm28577-201ENSMUST00000176106 741 ntTSL 5 BASIC15.8■□□□□ 0.12
Chd3B1AR17 2810030D12Rik-203ENSMUST00000190461 1039 ntBASIC15.8■□□□□ 0.12
Chd3B1AR17 Gm10060-201ENSMUST00000212002 111 ntBASIC15.8■□□□□ 0.12
Chd3B1AR17 3830406C13Rik-207ENSMUST00000223927 1010 ntBASIC15.8■□□□□ 0.12
Chd3B1AR17 Csnk1g3-201ENSMUST00000069597 4394 ntAPPRIS P1 TSL 5 BASIC15.8■□□□□ 0.12
Chd3B1AR17 Dnal4-201ENSMUST00000023055 1469 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
Chd3B1AR17 Lrrtm1-202ENSMUST00000159616 2541 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
Chd3B1AR17 Baiap2-204ENSMUST00000106231 4005 ntAPPRIS ALT2 TSL 1 (best) BASIC15.8■□□□□ 0.12
Chd3B1AR17 Naf1-201ENSMUST00000118009 2990 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
Chd3B1AR17 Chst8-201ENSMUST00000078686 2372 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
Chd3B1AR17 Fam76a-202ENSMUST00000097856 1863 ntTSL 1 (best) BASIC15.79■□□□□ 0.12
Chd3B1AR17 B3gnt6-201ENSMUST00000098278 2371 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
Chd3B1AR17 St8sia1-201ENSMUST00000032421 8991 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
Chd3B1AR17 Map2k5-201ENSMUST00000034920 2310 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
Chd3B1AR17 Dlgap4-205ENSMUST00000109567 4840 ntAPPRIS ALT2 TSL 5 BASIC15.79■□□□□ 0.12
Chd3B1AR17 Uso1-201ENSMUST00000031355 3898 ntAPPRIS P2 TSL 1 (best) BASIC15.79■□□□□ 0.12
Chd3B1AR17 Plcl2-201ENSMUST00000043938 4050 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
Chd3B1AR17 BC051019-202ENSMUST00000106735 1957 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
Chd3B1AR17 Rhox13-201ENSMUST00000152730 876 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
Chd3B1AR17 1700016B15Rik-201ENSMUST00000209027 733 ntBASIC15.79■□□□□ 0.12
Chd3B1AR17 Hoxd4-201ENSMUST00000047904 2560 ntAPPRIS P1 TSL 5 BASIC15.79■□□□□ 0.12
Chd3B1AR17 Guf1-202ENSMUST00000087228 3433 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
Chd3B1AR17 Pus1-204ENSMUST00000112426 1389 ntTSL 1 (best) BASIC15.79■□□□□ 0.12
Chd3B1AR17 Matk-202ENSMUST00000117488 1980 ntAPPRIS P3 TSL 1 (best) BASIC15.79■□□□□ 0.12
Chd3B1AR17 Taf5l-201ENSMUST00000093039 2912 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
Chd3B1AR17 Xpo4-209ENSMUST00000174545 8680 ntAPPRIS P2 TSL 1 (best) BASIC15.79■□□□□ 0.12
Chd3B1AR17 Slain1-201ENSMUST00000069443 2863 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
Chd3B1AR17 Gm13884-201ENSMUST00000118103 829 ntBASIC15.79■□□□□ 0.12
Chd3B1AR17 Gm6443-201ENSMUST00000203599 874 ntBASIC15.79■□□□□ 0.12
Chd3B1AR17 AC148328.1-201ENSMUST00000216448 920 ntTSL 5 BASIC15.79■□□□□ 0.12
Chd3B1AR17 Dmpk-203ENSMUST00000108474 2591 ntAPPRIS ALT2 TSL 1 (best) BASIC15.78■□□□□ 0.12
Chd3B1AR17 Wrb-201ENSMUST00000023913 2495 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
Chd3B1AR17 Rbpms-203ENSMUST00000053251 2466 ntTSL 1 (best) BASIC15.78■□□□□ 0.12
Chd3B1AR17 Snx16-201ENSMUST00000029047 2288 ntAPPRIS P3 TSL 1 (best) BASIC15.78■□□□□ 0.12
Chd3B1AR17 Mettl27-202ENSMUST00000068617 1685 ntTSL 1 (best) BASIC15.78■□□□□ 0.12
Chd3B1AR17 Gm12480-201ENSMUST00000129576 774 ntTSL 3 BASIC15.78■□□□□ 0.12
Chd3B1AR17 Cyhr1-204ENSMUST00000177359 1110 ntTSL 1 (best) BASIC15.78■□□□□ 0.12
Chd3B1AR17 Myl12b-201ENSMUST00000038446 1253 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
Chd3B1AR17 Tmem116-203ENSMUST00000094357 1366 ntAPPRIS ALT2 TSL 5 BASIC15.78■□□□□ 0.12
Chd3B1AR17 AC115863.1-201ENSMUST00000214815 1813 ntBASIC15.78■□□□□ 0.12
Chd3B1AR17 Phtf1-201ENSMUST00000055425 3060 ntTSL 1 (best) BASIC15.78■□□□□ 0.12
Chd3B1AR17 Tspan5-201ENSMUST00000029800 6653 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
Chd3B1AR17 Cd164l2-201ENSMUST00000105910 986 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.12
Chd3B1AR17 Get4-202ENSMUST00000110878 1180 ntAPPRIS ALT2 TSL 1 (best) BASIC15.77■□□□□ 0.12
Chd3B1AR17 Fam3a-203ENSMUST00000114139 931 ntTSL 5 BASIC15.77■□□□□ 0.12
Chd3B1AR17 Gm13216-201ENSMUST00000117145 591 ntBASIC15.77■□□□□ 0.12
Retrieved 100 of 76,532 protein–RNA pairs in 17.4 ms