Protein–RNA interactions for Protein: Q9UPQ0

LIMCH1, LIM and calponin homology domains-containing protein 1, humanhuman

Predictions only

Length 1,083 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1Q9UPQ0 MTND4P29-201ENST00000503122 1372 ntBASIC3.9□□□□□ -1.78
LIMCH1Q9UPQ0 AL161912.2-201ENST00000565707 3007 ntBASIC3.9□□□□□ -1.78
LIMCH1Q9UPQ0 AC103993.1-201ENST00000521500 1584 ntTSL 5 BASIC3.9□□□□□ -1.78
LIMCH1Q9UPQ0 RNU1-70P-201ENST00000362618 164 ntBASIC3.9□□□□□ -1.79
LIMCH1Q9UPQ0 RNU6-371P-201ENST00000364283 108 ntBASIC3.9□□□□□ -1.79
LIMCH1Q9UPQ0 RNU6-512P-201ENST00000364438 103 ntBASIC3.9□□□□□ -1.79
LIMCH1Q9UPQ0 Y_RNA.245-201ENST00000364493 95 ntBASIC3.9□□□□□ -1.79
LIMCH1Q9UPQ0 SNORA73.2-201ENST00000364946 201 ntBASIC3.9□□□□□ -1.79
LIMCH1Q9UPQ0 RNU1-64P-201ENST00000365443 163 ntBASIC3.9□□□□□ -1.79
LIMCH1Q9UPQ0 Y_RNA.356-201ENST00000365475 113 ntBASIC3.9□□□□□ -1.79
LIMCH1Q9UPQ0 Y_RNA.414-201ENST00000384011 101 ntBASIC3.9□□□□□ -1.79
LIMCH1Q9UPQ0 SNORA16.2-201ENST00000390991 127 ntBASIC3.9□□□□□ -1.79
LIMCH1Q9UPQ0 HSPE1P26-201ENST00000405341 275 ntBASIC3.9□□□□□ -1.79
LIMCH1Q9UPQ0 AL356432.1-201ENST00000405809 419 ntBASIC3.9□□□□□ -1.79
LIMCH1Q9UPQ0 RN7SKP202-201ENST00000410439 330 ntBASIC3.9□□□□□ -1.79
LIMCH1Q9UPQ0 RNA5SP293-201ENST00000410527 113 ntBASIC3.9□□□□□ -1.79
LIMCH1Q9UPQ0 OFD1P1Y-201ENST00000411756 1225 ntBASIC3.9□□□□□ -1.79
LIMCH1Q9UPQ0 AL022329.2-201ENST00000413494 660 ntTSL 5 BASIC3.9□□□□□ -1.79
LIMCH1Q9UPQ0 BX682237.1-201ENST00000415016 335 ntBASIC3.9□□□□□ -1.79
LIMCH1Q9UPQ0 TAB3-AS1-201ENST00000428263 245 ntTSL 5 BASIC3.9□□□□□ -1.79
LIMCH1Q9UPQ0 AL669831.1-202ENST00000428504 417 ntBASIC3.9□□□□□ -1.79
LIMCH1Q9UPQ0 AL592045.1-201ENST00000429867 352 ntBASIC3.9□□□□□ -1.79
LIMCH1Q9UPQ0 GPM6BP2-201ENST00000432046 144 ntBASIC3.9□□□□□ -1.79
LIMCH1Q9UPQ0 RPL23AP22-201ENST00000437556 453 ntBASIC3.9□□□□□ -1.79
LIMCH1Q9UPQ0 CST9LP2-201ENST00000437612 320 ntBASIC3.9□□□□□ -1.79
LIMCH1Q9UPQ0 GTF2IP13-201ENST00000438487 386 ntBASIC3.9□□□□□ -1.79
LIMCH1Q9UPQ0 GPM6BP1-201ENST00000446387 144 ntBASIC3.9□□□□□ -1.79
LIMCH1Q9UPQ0 AL035634.1-201ENST00000446768 372 ntTSL 2 BASIC3.9□□□□□ -1.79
LIMCH1Q9UPQ0 RPL21P93-201ENST00000480465 489 ntBASIC3.9□□□□□ -1.79
LIMCH1Q9UPQ0 RPS4XP13-201ENST00000483219 789 ntBASIC3.9□□□□□ -1.79
LIMCH1Q9UPQ0 AC008957.1-201ENST00000510740 478 ntTSL 3 BASIC3.9□□□□□ -1.79
LIMCH1Q9UPQ0 AC079160.1-201ENST00000513489 739 ntTSL 1 (best) BASIC3.9□□□□□ -1.79
LIMCH1Q9UPQ0 RNU2-69P-201ENST00000516061 100 ntBASIC3.9□□□□□ -1.79
LIMCH1Q9UPQ0 TRMT10BP1-201ENST00000519377 943 ntBASIC3.9□□□□□ -1.79
LIMCH1Q9UPQ0 LYRM2-203ENST00000520318 677 ntTSL 2 BASIC3.9□□□□□ -1.79
LIMCH1Q9UPQ0 AC114550.2-201ENST00000524008 397 ntTSL 3 BASIC3.9□□□□□ -1.79
LIMCH1Q9UPQ0 AC013799.1-201ENST00000531157 348 ntTSL 2 BASIC3.9□□□□□ -1.79
LIMCH1Q9UPQ0 AC011611.1-201ENST00000552179 197 ntBASIC3.9□□□□□ -1.79
LIMCH1Q9UPQ0 TRAV28-201ENST00000557548 323 ntBASIC3.9□□□□□ -1.79
LIMCH1Q9UPQ0 MIR1273C-201ENST00000578669 77 ntBASIC3.9□□□□□ -1.79
LIMCH1Q9UPQ0 MIR4742-201ENST00000581069 85 ntBASIC3.9□□□□□ -1.79
LIMCH1Q9UPQ0 AC093227.2-201ENST00000589357 285 ntBASIC3.9□□□□□ -1.79
LIMCH1Q9UPQ0 AC005498.1-201ENST00000592125 465 ntBASIC3.9□□□□□ -1.79
LIMCH1Q9UPQ0 BNIP3P25-201ENST00000596023 559 ntBASIC3.9□□□□□ -1.79
LIMCH1Q9UPQ0 AC243960.4-201ENST00000600532 288 ntBASIC3.9□□□□□ -1.79
LIMCH1Q9UPQ0 AC048347.1-201ENST00000624621 427 ntBASIC3.9□□□□□ -1.79
LIMCH1Q9UPQ0 ABCA9-AS1-203ENST00000627596 426 ntTSL 5 BASIC3.9□□□□□ -1.79
LIMCH1Q9UPQ0 AL034408.1-202ENST00000636088 415 ntBASIC3.9□□□□□ -1.79
LIMCH1Q9UPQ0 CEP85L-202ENST00000368488 7118 ntTSL 5 BASIC3.9□□□□□ -1.79
LIMCH1Q9UPQ0 LINC00890-202ENST00000569275 4595 ntAPPRIS P1 TSL 1 (best) BASIC3.9□□□□□ -1.79
LIMCH1Q9UPQ0 AL359693.1-201ENST00000614959 2407 ntBASIC3.9□□□□□ -1.79
LIMCH1Q9UPQ0 AC093908.1-201ENST00000623125 8092 ntBASIC3.9□□□□□ -1.79
LIMCH1Q9UPQ0 AC007785.2-201ENST00000598627 1916 ntBASIC3.89□□□□□ -1.79
LIMCH1Q9UPQ0 MKLN1-201ENST00000352689 11156 ntAPPRIS P1 TSL 1 (best) BASIC3.89□□□□□ -1.79
LIMCH1Q9UPQ0 FKTN-209ENST00000602661 2576 ntAPPRIS P1 TSL 1 (best) BASIC3.89□□□□□ -1.79
LIMCH1Q9UPQ0 RNA5SP119-201ENST00000362715 117 ntBASIC3.89□□□□□ -1.79
LIMCH1Q9UPQ0 Y_RNA.167-201ENST00000363735 109 ntBASIC3.89□□□□□ -1.79
LIMCH1Q9UPQ0 RNU6-831P-201ENST00000384548 107 ntBASIC3.89□□□□□ -1.79
LIMCH1Q9UPQ0 RNU6-1197P-201ENST00000391183 107 ntBASIC3.89□□□□□ -1.79
LIMCH1Q9UPQ0 PTMAP5-201ENST00000393073 333 ntBASIC3.89□□□□□ -1.79
LIMCH1Q9UPQ0 TRAPPC2P4-201ENST00000421750 331 ntBASIC3.89□□□□□ -1.79
LIMCH1Q9UPQ0 MTND4P28-201ENST00000426217 387 ntBASIC3.89□□□□□ -1.79
LIMCH1Q9UPQ0 AL356124.2-201ENST00000442449 391 ntTSL 5 BASIC3.89□□□□□ -1.79
LIMCH1Q9UPQ0 RPS24P13-201ENST00000442520 397 ntBASIC3.89□□□□□ -1.79
LIMCH1Q9UPQ0 LINC00302-201ENST00000444515 302 ntTSL 1 (best) BASIC3.89□□□□□ -1.79
LIMCH1Q9UPQ0 PRPS1P1-201ENST00000445305 876 ntBASIC3.89□□□□□ -1.79
LIMCH1Q9UPQ0 AC125238.1-201ENST00000448842 249 ntBASIC3.89□□□□□ -1.79
LIMCH1Q9UPQ0 AC083904.1-201ENST00000487828 231 ntBASIC3.89□□□□□ -1.79
LIMCH1Q9UPQ0 RPL30P5-201ENST00000494923 336 ntBASIC3.89□□□□□ -1.79
LIMCH1Q9UPQ0 AL627309.4-201ENST00000496488 457 ntTSL 5 BASIC3.89□□□□□ -1.79
LIMCH1Q9UPQ0 AC112206.3-201ENST00000514578 389 ntBASIC3.89□□□□□ -1.79
LIMCH1Q9UPQ0 RNU1-143P-201ENST00000516296 146 ntBASIC3.89□□□□□ -1.79
LIMCH1Q9UPQ0 RNA5SP290-201ENST00000517133 127 ntBASIC3.89□□□□□ -1.79
LIMCH1Q9UPQ0 RNU6-1315P-201ENST00000517187 99 ntBASIC3.89□□□□□ -1.79
LIMCH1Q9UPQ0 AC090136.1-201ENST00000520009 240 ntBASIC3.89□□□□□ -1.79
LIMCH1Q9UPQ0 AP000763.2-201ENST00000540641 163 ntBASIC3.89□□□□□ -1.79
LIMCH1Q9UPQ0 AC025254.1-201ENST00000550035 247 ntTSL 5 BASIC3.89□□□□□ -1.79
LIMCH1Q9UPQ0 PCED1B-AS1-208ENST00000551898 359 ntTSL 3 BASIC3.89□□□□□ -1.79
LIMCH1Q9UPQ0 AC090115.3-201ENST00000553218 849 ntBASIC3.89□□□□□ -1.79
LIMCH1Q9UPQ0 AC099518.4-202ENST00000576433 455 ntTSL 2 BASIC3.89□□□□□ -1.79
LIMCH1Q9UPQ0 MIR548AC-201ENST00000585049 88 ntBASIC3.89□□□□□ -1.79
LIMCH1Q9UPQ0 AC021646.1-201ENST00000605469 484 ntBASIC3.89□□□□□ -1.79
LIMCH1Q9UPQ0 AC087045.1-201ENST00000605856 382 ntBASIC3.89□□□□□ -1.79
LIMCH1Q9UPQ0 U1.23-201ENST00000610293 146 ntBASIC3.89□□□□□ -1.79
LIMCH1Q9UPQ0 RASSF8-215ENST00000611440 852 ntTSL 5 BASIC3.89□□□□□ -1.79
LIMCH1Q9UPQ0 RNU1-68P-201ENST00000615382 146 ntBASIC3.89□□□□□ -1.79
LIMCH1Q9UPQ0 U1.39-201ENST00000621562 146 ntBASIC3.89□□□□□ -1.79
LIMCH1Q9UPQ0 AC039056.2-201ENST00000622261 511 ntBASIC3.89□□□□□ -1.79
LIMCH1Q9UPQ0 AL359697.1-201ENST00000624879 587 ntBASIC3.89□□□□□ -1.79
LIMCH1Q9UPQ0 Z99571.1-201ENST00000636677 394 ntBASIC3.89□□□□□ -1.79
LIMCH1Q9UPQ0 SLC39A10-202ENST00000409086 5432 ntAPPRIS P1 TSL 1 (best) BASIC3.89□□□□□ -1.79
LIMCH1Q9UPQ0 CACNB4-222ENST00000636350 7654 ntTSL 5 BASIC3.89□□□□□ -1.79
LIMCH1Q9UPQ0 KIAA0586-215ENST00000619722 5597 ntAPPRIS ALT2 TSL 2 BASIC3.89□□□□□ -1.79
LIMCH1Q9UPQ0 DST-204ENST00000361203 22431 ntAPPRIS ALT2 TSL 5 BASIC3.89□□□□□ -1.79
LIMCH1Q9UPQ0 ATP8A2P2-201ENST00000437678 1568 ntBASIC3.89□□□□□ -1.79
LIMCH1Q9UPQ0 OR6C1-202ENST00000642104 2055 ntAPPRIS P1 BASIC3.88□□□□□ -1.79
LIMCH1Q9UPQ0 SNORA4.3-201ENST00000365564 137 ntBASIC3.88□□□□□ -1.79
LIMCH1Q9UPQ0 Y_RNA.480-201ENST00000384364 102 ntBASIC3.88□□□□□ -1.79
LIMCH1Q9UPQ0 RNU6-45P-201ENST00000384471 107 ntBASIC3.88□□□□□ -1.79
LIMCH1Q9UPQ0 RNA5SP219-201ENST00000390940 113 ntBASIC3.88□□□□□ -1.79
Retrieved 100 of 98,524 protein–RNA pairs in 136.8 ms