Protein–RNA interactions for Protein: Q96M95

CCDC42, Coiled-coil domain-containing protein 42, humanhuman

Predictions only

Length 316 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC42Q96M95 AC019226.1-201ENST00000625666 515 ntBASIC1.48□□□□□ -2.17
CCDC42Q96M95 GYPB-216ENST00000638448 363 ntAPPRIS P1 TSL 1 (best) BASIC1.48□□□□□ -2.17
CCDC42Q96M95 CD44-239ENST00000639002 528 ntTSL 1 (best) BASIC1.48□□□□□ -2.17
CCDC42Q96M95 ZNF736P3Y-201ENST00000428264 1465 ntBASIC1.48□□□□□ -2.17
CCDC42Q96M95 HIF1A-212ENST00000557538 3468 ntTSL 1 (best) BASIC1.47□□□□□ -2.17
CCDC42Q96M95 SHOC2-201ENST00000265277 3691 ntTSL 2 BASIC1.47□□□□□ -2.17
CCDC42Q96M95 AC010731.2-201ENST00000415275 440 ntTSL 3 BASIC1.47□□□□□ -2.17
CCDC42Q96M95 KRTAP25-1-201ENST00000416044 370 ntAPPRIS P1 BASIC1.47□□□□□ -2.17
CCDC42Q96M95 DNAJA1P2-201ENST00000421360 1197 ntBASIC1.47□□□□□ -2.17
CCDC42Q96M95 EDNRB-AS1-201ENST00000422405 601 ntTSL 5 BASIC1.47□□□□□ -2.17
CCDC42Q96M95 AP001043.2-201ENST00000434589 288 ntTSL 3 BASIC1.47□□□□□ -2.17
CCDC42Q96M95 AL359878.2-201ENST00000435531 407 ntTSL 3 BASIC1.47□□□□□ -2.17
CCDC42Q96M95 AC097478.1-204ENST00000509723 547 ntTSL 3 BASIC1.47□□□□□ -2.17
CCDC42Q96M95 AC097460.1-201ENST00000514624 590 ntTSL 3 BASIC1.47□□□□□ -2.17
CCDC42Q96M95 SNORA25.11-201ENST00000515935 105 ntBASIC1.47□□□□□ -2.17
CCDC42Q96M95 RNU6-703P-201ENST00000516946 107 ntBASIC1.47□□□□□ -2.17
CCDC42Q96M95 AC007991.3-201ENST00000517623 502 ntTSL 4 BASIC1.47□□□□□ -2.17
CCDC42Q96M95 AC106038.1-203ENST00000522132 362 ntTSL 2 BASIC1.47□□□□□ -2.17
CCDC42Q96M95 AC007450.1-201ENST00000536492 188 ntTSL 3 BASIC1.47□□□□□ -2.17
CCDC42Q96M95 AC087311.2-201ENST00000549660 320 ntTSL 4 BASIC1.47□□□□□ -2.17
CCDC42Q96M95 AL161722.3-201ENST00000605789 2983 ntBASIC1.47□□□□□ -2.17
CCDC42Q96M95 AC092953.2-201ENST00000608000 699 ntBASIC1.47□□□□□ -2.17
CCDC42Q96M95 TUG1_2.1-201ENST00000614234 87 ntBASIC1.47□□□□□ -2.17
CCDC42Q96M95 AC120349.2-201ENST00000625002 298 ntBASIC1.47□□□□□ -2.17
CCDC42Q96M95 LIPJ-201ENST00000371939 1484 ntAPPRIS P1 TSL 1 (best) BASIC1.47□□□□□ -2.17
CCDC42Q96M95 MIR150-201ENST00000385048 84 ntBASIC1.46□□□□□ -2.18
CCDC42Q96M95 AL590084.2-201ENST00000401481 382 ntBASIC1.46□□□□□ -2.18
CCDC42Q96M95 EIF4EP2-201ENST00000422816 654 ntBASIC1.46□□□□□ -2.18
CCDC42Q96M95 AL157387.1-201ENST00000436077 335 ntTSL 2 BASIC1.46□□□□□ -2.18
CCDC42Q96M95 AC006333.1-202ENST00000440504 555 ntTSL 4 BASIC1.46□□□□□ -2.18
CCDC42Q96M95 LINC01203-202ENST00000456091 476 ntTSL 3 BASIC1.46□□□□□ -2.18
CCDC42Q96M95 AL441985.1-201ENST00000457727 251 ntBASIC1.46□□□□□ -2.18
CCDC42Q96M95 AC098868.1-201ENST00000512628 624 ntTSL 2 BASIC1.46□□□□□ -2.18
CCDC42Q96M95 AC093766.1-202ENST00000513400 718 ntTSL 3 BASIC1.46□□□□□ -2.18
CCDC42Q96M95 DUXAP5-201ENST00000529668 529 ntBASIC1.46□□□□□ -2.18
CCDC42Q96M95 AC103798.1-201ENST00000532562 376 ntTSL 2 BASIC1.46□□□□□ -2.18
CCDC42Q96M95 AL135746.1-201ENST00000554205 547 ntTSL 3 BASIC1.46□□□□□ -2.18
CCDC42Q96M95 AC245748.3-201ENST00000588710 241 ntTSL 3 BASIC1.46□□□□□ -2.18
CCDC42Q96M95 GALNT1-205ENST00000591081 1120 ntTSL 1 (best) BASIC1.46□□□□□ -2.18
CCDC42Q96M95 ZEB2_AS1_1.1-201ENST00000621504 128 ntBASIC1.46□□□□□ -2.18
CCDC42Q96M95 AL157770.1-201ENST00000623049 439 ntBASIC1.46□□□□□ -2.18
CCDC42Q96M95 AL118508.4-201ENST00000624142 1176 ntBASIC1.46□□□□□ -2.18
CCDC42Q96M95 FANCD2-213ENST00000625535 117 ntTSL 5 BASIC1.46□□□□□ -2.18
CCDC42Q96M95 MDM2-206ENST00000350057 1401 ntTSL 1 (best) BASIC1.46□□□□□ -2.18
CCDC42Q96M95 ANKRD20A9P-201ENST00000457997 2978 ntBASIC1.46□□□□□ -2.18
CCDC42Q96M95 RNU6-203P-201ENST00000384038 104 ntBASIC1.45□□□□□ -2.18
CCDC42Q96M95 UBE2V1P15-201ENST00000407776 448 ntBASIC1.45□□□□□ -2.18
CCDC42Q96M95 AL353621.1-201ENST00000418219 243 ntBASIC1.45□□□□□ -2.18
CCDC42Q96M95 AL590705.2-201ENST00000420204 281 ntTSL 5 BASIC1.45□□□□□ -2.18
CCDC42Q96M95 LINC01510-201ENST00000441991 468 ntTSL 3 BASIC1.45□□□□□ -2.18
CCDC42Q96M95 AL137159.1-201ENST00000452808 512 ntBASIC1.45□□□□□ -2.18
CCDC42Q96M95 BX322784.1-201ENST00000455793 1077 ntBASIC1.45□□□□□ -2.18
CCDC42Q96M95 RPS29P23-201ENST00000458635 123 ntBASIC1.45□□□□□ -2.18
CCDC42Q96M95 AC008628.1-201ENST00000508663 265 ntBASIC1.45□□□□□ -2.18
CCDC42Q96M95 AC093752.1-206ENST00000511823 336 ntBASIC1.45□□□□□ -2.18
CCDC42Q96M95 AC110009.1-201ENST00000512965 451 ntTSL 5 BASIC1.45□□□□□ -2.18
CCDC42Q96M95 AF117829.1-204ENST00000519854 284 ntTSL 3 BASIC1.45□□□□□ -2.18
CCDC42Q96M95 AC079598.5-201ENST00000547460 117 ntBASIC1.45□□□□□ -2.18
CCDC42Q96M95 PCLAF-207ENST00000559519 749 ntTSL 2 BASIC1.45□□□□□ -2.18
CCDC42Q96M95 AC012213.3-201ENST00000577199 777 ntBASIC1.45□□□□□ -2.18
CCDC42Q96M95 MIR3198-2-201ENST00000577868 80 ntBASIC1.45□□□□□ -2.18
CCDC42Q96M95 AC098848.1-201ENST00000588466 567 ntTSL 4 BASIC1.45□□□□□ -2.18
CCDC42Q96M95 AC100781.1-201ENST00000597142 383 ntTSL 3 BASIC1.45□□□□□ -2.18
CCDC42Q96M95 AL713866.2-201ENST00000603579 219 ntBASIC1.45□□□□□ -2.18
CCDC42Q96M95 AL645939.4-201ENST00000604495 135 ntBASIC1.45□□□□□ -2.18
CCDC42Q96M95 SCOC-AS1-203ENST00000609616 405 ntTSL 3 BASIC1.45□□□□□ -2.18
CCDC42Q96M95 TMEM154-204ENST00000613578 486 ntAPPRIS ALT2 TSL 5 BASIC1.45□□□□□ -2.18
CCDC42Q96M95 AL357080.1-201ENST00000617394 239 ntBASIC1.45□□□□□ -2.18
CCDC42Q96M95 AC006338.1-201ENST00000618453 749 ntBASIC1.45□□□□□ -2.18
CCDC42Q96M95 AC092192.1-201ENST00000633154 1018 ntBASIC1.45□□□□□ -2.18
CCDC42Q96M95 AC002543.1-201ENST00000299783 1954 ntBASIC1.45□□□□□ -2.18
CCDC42Q96M95 ZNF72P-201ENST00000425869 1908 ntBASIC1.44□□□□□ -2.18
CCDC42Q96M95 KCNIP4-207ENST00000509207 1301 ntTSL 1 (best) BASIC1.44□□□□□ -2.18
CCDC42Q96M95 RNU6-658P-201ENST00000384606 106 ntBASIC1.44□□□□□ -2.18
CCDC42Q96M95 MIR1302-8-201ENST00000408342 128 ntBASIC1.44□□□□□ -2.18
CCDC42Q96M95 RNU6-174P-201ENST00000410406 106 ntBASIC1.44□□□□□ -2.18
CCDC42Q96M95 AC127391.1-201ENST00000411737 98 ntBASIC1.44□□□□□ -2.18
CCDC42Q96M95 MTND1P21-201ENST00000412991 285 ntBASIC1.44□□□□□ -2.18
CCDC42Q96M95 USP9YP6-201ENST00000413550 854 ntBASIC1.44□□□□□ -2.18
CCDC42Q96M95 TPMTP2-201ENST00000414372 726 ntBASIC1.44□□□□□ -2.18
CCDC42Q96M95 BTF3L4P3-201ENST00000418879 476 ntBASIC1.44□□□□□ -2.18
CCDC42Q96M95 AL645937.4-201ENST00000419702 389 ntTSL 2 BASIC1.44□□□□□ -2.18
CCDC42Q96M95 BX119904.4-201ENST00000424402 301 ntBASIC1.44□□□□□ -2.18
CCDC42Q96M95 SDAD1P3-201ENST00000427380 333 ntBASIC1.44□□□□□ -2.18
CCDC42Q96M95 USP9YP24-201ENST00000434374 697 ntBASIC1.44□□□□□ -2.18
CCDC42Q96M95 AL353706.1-201ENST00000436728 494 ntBASIC1.44□□□□□ -2.18
CCDC42Q96M95 LINC01077-201ENST00000452288 413 ntTSL 3 BASIC1.44□□□□□ -2.18
CCDC42Q96M95 KATNBL1P6-201ENST00000453433 915 ntBASIC1.44□□□□□ -2.18
CCDC42Q96M95 SNORD13-201ENST00000459299 104 ntBASIC1.44□□□□□ -2.18
CCDC42Q96M95 SNORA59A-201ENST00000459326 152 ntBASIC1.44□□□□□ -2.18
CCDC42Q96M95 MTND5P13-201ENST00000513046 1079 ntBASIC1.44□□□□□ -2.18
CCDC42Q96M95 AC010261.1-201ENST00000514411 457 ntTSL 5 BASIC1.44□□□□□ -2.18
CCDC42Q96M95 AP003497.1-201ENST00000528472 562 ntBASIC1.44□□□□□ -2.18
CCDC42Q96M95 EMP1-206ENST00000537612 505 ntTSL 3 BASIC1.44□□□□□ -2.18
CCDC42Q96M95 CYB5AP5-201ENST00000549779 389 ntBASIC1.44□□□□□ -2.18
CCDC42Q96M95 SNRPGP17-201ENST00000603780 214 ntBASIC1.44□□□□□ -2.18
CCDC42Q96M95 AC009237.15-201ENST00000610252 501 ntBASIC1.44□□□□□ -2.18
CCDC42Q96M95 AC005332.6-201ENST00000613178 446 ntBASIC1.44□□□□□ -2.18
CCDC42Q96M95 AC108479.2-201ENST00000617314 601 ntBASIC1.44□□□□□ -2.18
CCDC42Q96M95 SMIM2-AS1-204ENST00000619472 746 ntTSL 3 BASIC1.44□□□□□ -2.18
Retrieved 100 of 98,524 protein–RNA pairs in 579.1 ms