Protein–RNA interactions for Protein: Q70EL1

USP54, Inactive ubiquitin carboxyl-terminal hydrolase 54, humanhuman

Predictions only

Length 1,684 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP54Q70EL1 RNU2-43P-201ENST00000410306 190 ntBASIC1.25□□□□□ -2.21
USP54Q70EL1 LURAP1L-AS1-201ENST00000417638 799 ntTSL 3 BASIC1.25□□□□□ -2.21
USP54Q70EL1 EBAG9P1-201ENST00000418955 543 ntBASIC1.25□□□□□ -2.21
USP54Q70EL1 AC005345.1-201ENST00000431868 217 ntBASIC1.25□□□□□ -2.21
USP54Q70EL1 RPL26P6-201ENST00000440913 438 ntBASIC1.25□□□□□ -2.21
USP54Q70EL1 AC025428.1-201ENST00000444137 403 ntTSL 3 BASIC1.25□□□□□ -2.21
USP54Q70EL1 DDX3P2-201ENST00000446138 111 ntBASIC1.25□□□□□ -2.21
USP54Q70EL1 AP1S2P1-201ENST00000457344 379 ntBASIC1.25□□□□□ -2.21
USP54Q70EL1 MGAT4A-209ENST00000495056 683 ntTSL 2 BASIC1.25□□□□□ -2.21
USP54Q70EL1 LINC02491-201ENST00000504710 403 ntTSL 2 BASIC1.25□□□□□ -2.21
USP54Q70EL1 TMEM132D-AS1-202ENST00000510001 293 ntTSL 1 (best) BASIC1.25□□□□□ -2.21
USP54Q70EL1 AP005230.1-201ENST00000585072 675 ntTSL 5 BASIC1.25□□□□□ -2.21
USP54Q70EL1 AC005034.5-201ENST00000604219 466 ntBASIC1.25□□□□□ -2.21
USP54Q70EL1 AC106052.1-201ENST00000608029 497 ntBASIC1.25□□□□□ -2.21
USP54Q70EL1 AC092140.2-201ENST00000618027 521 ntBASIC1.25□□□□□ -2.21
USP54Q70EL1 EVI2B-202ENST00000577894 1597 ntAPPRIS P1 TSL 2 BASIC1.24□□□□□ -2.21
USP54Q70EL1 RNU5A-1-201ENST00000362698 116 ntBASIC1.24□□□□□ -2.21
USP54Q70EL1 RNU6-252P-201ENST00000363232 107 ntBASIC1.24□□□□□ -2.21
USP54Q70EL1 RNA5SP125-201ENST00000364843 120 ntBASIC1.24□□□□□ -2.21
USP54Q70EL1 RNA5SP212-201ENST00000391223 107 ntBASIC1.24□□□□□ -2.21
USP54Q70EL1 U6atac.2-201ENST00000408644 118 ntBASIC1.24□□□□□ -2.21
USP54Q70EL1 RPS24P7-201ENST00000416921 246 ntBASIC1.24□□□□□ -2.21
USP54Q70EL1 TCEAL3-AS1-201ENST00000424887 361 ntTSL 5 BASIC1.24□□□□□ -2.21
USP54Q70EL1 AC004941.2-201ENST00000427009 228 ntBASIC1.24□□□□□ -2.21
USP54Q70EL1 ZNF965P-201ENST00000432501 817 ntBASIC1.24□□□□□ -2.21
USP54Q70EL1 FAR2P3-204ENST00000434661 444 ntTSL 2 BASIC1.24□□□□□ -2.21
USP54Q70EL1 AC092170.1-201ENST00000440211 356 ntBASIC1.24□□□□□ -2.21
USP54Q70EL1 AC118469.1-201ENST00000442943 488 ntBASIC1.24□□□□□ -2.21
USP54Q70EL1 AL050303.1-201ENST00000444356 458 ntTSL 2 BASIC1.24□□□□□ -2.21
USP54Q70EL1 AL121769.1-201ENST00000469473 401 ntBASIC1.24□□□□□ -2.21
USP54Q70EL1 AC092989.1-201ENST00000481235 277 ntBASIC1.24□□□□□ -2.21
USP54Q70EL1 MRPS33P3-201ENST00000513456 322 ntBASIC1.24□□□□□ -2.21
USP54Q70EL1 RN7SKP179-201ENST00000516126 217 ntBASIC1.24□□□□□ -2.21
USP54Q70EL1 AC018437.2-201ENST00000517369 389 ntTSL 5 BASIC1.24□□□□□ -2.21
USP54Q70EL1 AP000722.1-201ENST00000531176 775 ntTSL 3 BASIC1.24□□□□□ -2.21
USP54Q70EL1 HSPE1P4-201ENST00000550617 308 ntBASIC1.24□□□□□ -2.21
USP54Q70EL1 AL133372.3-201ENST00000553082 821 ntTSL 3 BASIC1.24□□□□□ -2.21
USP54Q70EL1 AC011509.1-201ENST00000589512 164 ntTSL 3 BASIC1.24□□□□□ -2.21
USP54Q70EL1 AC025588.2-201ENST00000604851 466 ntBASIC1.24□□□□□ -2.21
USP54Q70EL1 AC080013.4-201ENST00000607624 649 ntBASIC1.24□□□□□ -2.21
USP54Q70EL1 AC008498.1-201ENST00000613012 531 ntBASIC1.24□□□□□ -2.21
USP54Q70EL1 ATG5-207ENST00000613993 733 ntTSL 1 (best) BASIC1.24□□□□□ -2.21
USP54Q70EL1 AL773524.1-201ENST00000614065 229 ntBASIC1.24□□□□□ -2.21
USP54Q70EL1 FRG1HP-204ENST00000617940 757 ntBASIC1.24□□□□□ -2.21
USP54Q70EL1 AC091304.6-201ENST00000619761 202 ntBASIC1.24□□□□□ -2.21
USP54Q70EL1 FP475955.2-201ENST00000623720 458 ntTSL 2 BASIC1.24□□□□□ -2.21
USP54Q70EL1 C7orf66-201ENST00000624695 435 ntTSL 2 BASIC1.24□□□□□ -2.21
USP54Q70EL1 AC005832.2-201ENST00000538921 1430 ntBASIC1.24□□□□□ -2.21
USP54Q70EL1 ZNF639-206ENST00000484866 1730 ntAPPRIS P1 TSL 2 BASIC1.24□□□□□ -2.21
USP54Q70EL1 ZNF679-201ENST00000255746 1297 ntAPPRIS P1 TSL 1 (best) BASIC1.23□□□□□ -2.21
USP54Q70EL1 MIR135A2-201ENST00000384854 100 ntBASIC1.23□□□□□ -2.21
USP54Q70EL1 AL033539.1-201ENST00000427775 743 ntTSL 3 BASIC1.23□□□□□ -2.21
USP54Q70EL1 AC005534.2-201ENST00000431047 433 ntBASIC1.23□□□□□ -2.21
USP54Q70EL1 MIR4435-2HG-206ENST00000432818 572 ntTSL 5 BASIC1.23□□□□□ -2.21
USP54Q70EL1 LINC02046-202ENST00000481334 390 ntTSL 3 BASIC1.23□□□□□ -2.21
USP54Q70EL1 LINC02053-202ENST00000488262 940 ntTSL 1 (best) BASIC1.23□□□□□ -2.21
USP54Q70EL1 AC114801.2-201ENST00000503825 781 ntBASIC1.23□□□□□ -2.21
USP54Q70EL1 LINC02377-202ENST00000505436 523 ntTSL 5 BASIC1.23□□□□□ -2.21
USP54Q70EL1 ARL2BPP5-201ENST00000523141 481 ntBASIC1.23□□□□□ -2.21
USP54Q70EL1 HTN3-202ENST00000526767 578 ntAPPRIS P2 TSL 1 (best) BASIC1.23□□□□□ -2.21
USP54Q70EL1 AL133241.1-201ENST00000556832 487 ntBASIC1.23□□□□□ -2.21
USP54Q70EL1 AC008269.2-201ENST00000561915 1105 ntBASIC1.23□□□□□ -2.21
USP54Q70EL1 AC109454.4-201ENST00000623411 649 ntBASIC1.23□□□□□ -2.21
USP54Q70EL1 HIF1A-212ENST00000557538 3468 ntTSL 1 (best) BASIC1.23□□□□□ -2.21
USP54Q70EL1 MIR147B-201ENST00000390185 80 ntBASIC1.23□□□□□ -2.21
USP54Q70EL1 LINC01509-202ENST00000423523 408 ntTSL 3 BASIC1.23□□□□□ -2.21
USP54Q70EL1 AC092648.1-201ENST00000425870 423 ntBASIC1.23□□□□□ -2.21
USP54Q70EL1 AL353691.1-201ENST00000451332 387 ntBASIC1.23□□□□□ -2.21
USP54Q70EL1 DYNLL1P5-201ENST00000467158 270 ntBASIC1.23□□□□□ -2.21
USP54Q70EL1 CFAP44-AS1-202ENST00000498480 686 ntTSL 3 BASIC1.23□□□□□ -2.21
USP54Q70EL1 AC105343.1-201ENST00000505586 358 ntTSL 3 BASIC1.23□□□□□ -2.21
USP54Q70EL1 AC008127.2-201ENST00000549925 1075 ntBASIC1.23□□□□□ -2.21
USP54Q70EL1 AP001269.3-201ENST00000588718 329 ntBASIC1.23□□□□□ -2.21
USP54Q70EL1 AL512605.2-201ENST00000592972 256 ntBASIC1.23□□□□□ -2.21
USP54Q70EL1 AL021997.1-201ENST00000605757 193 ntBASIC1.23□□□□□ -2.21
USP54Q70EL1 AC069294.1-201ENST00000608397 350 ntBASIC1.23□□□□□ -2.21
USP54Q70EL1 AP000238.1-201ENST00000608759 426 ntBASIC1.23□□□□□ -2.21
USP54Q70EL1 AC090617.9-201ENST00000623751 147 ntBASIC1.23□□□□□ -2.21
USP54Q70EL1 IGSF11-AS1-201ENST00000477009 1604 ntTSL 2 BASIC1.22□□□□□ -2.21
USP54Q70EL1 SPAG11A-202ENST00000326625 445 ntTSL 5 BASIC1.22□□□□□ -2.21
USP54Q70EL1 RNA5SP450-201ENST00000411206 102 ntBASIC1.22□□□□□ -2.21
USP54Q70EL1 UBE2V1P11-201ENST00000411559 285 ntBASIC1.22□□□□□ -2.21
USP54Q70EL1 NDUFB4P7-201ENST00000423198 363 ntBASIC1.22□□□□□ -2.21
USP54Q70EL1 AC104777.1-203ENST00000423428 554 ntTSL 3 BASIC1.22□□□□□ -2.21
USP54Q70EL1 LINC01673-201ENST00000426418 468 ntTSL 3 BASIC1.22□□□□□ -2.21
USP54Q70EL1 LINC01953-201ENST00000426870 717 ntTSL 5 BASIC1.22□□□□□ -2.21
USP54Q70EL1 AC055764.1-201ENST00000454526 473 ntTSL 3 BASIC1.22□□□□□ -2.21
USP54Q70EL1 CR383656.8-201ENST00000549046 145 ntBASIC1.22□□□□□ -2.21
USP54Q70EL1 NACAP3-201ENST00000552100 481 ntBASIC1.22□□□□□ -2.21
USP54Q70EL1 AC022145.1-201ENST00000600673 383 ntTSL 3 BASIC1.22□□□□□ -2.21
USP54Q70EL1 AC112250.2-201ENST00000609450 491 ntTSL 3 BASIC1.22□□□□□ -2.21
USP54Q70EL1 AC008443.7-201ENST00000622195 246 ntBASIC1.22□□□□□ -2.21
USP54Q70EL1 LINC01111-201ENST00000518732 1663 ntTSL 1 (best) BASIC1.22□□□□□ -2.21
USP54Q70EL1 OR6C75-201ENST00000343399 939 ntAPPRIS P1 BASIC1.21□□□□□ -2.22
USP54Q70EL1 RNU1-72P-201ENST00000362976 153 ntBASIC1.21□□□□□ -2.22
USP54Q70EL1 GSTA3-202ENST00000370968 775 ntTSL 1 (best) BASIC1.21□□□□□ -2.22
USP54Q70EL1 RNU6-40P-201ENST00000384254 107 ntBASIC1.21□□□□□ -2.22
USP54Q70EL1 MIR216A-201ENST00000385063 110 ntBASIC1.21□□□□□ -2.22
USP54Q70EL1 MIR888-201ENST00000401186 77 ntBASIC1.21□□□□□ -2.22
USP54Q70EL1 HMGB1P17-201ENST00000403495 628 ntBASIC1.21□□□□□ -2.22
Retrieved 100 of 98,524 protein–RNA pairs in 102.9 ms