Protein–RNA interactions for Protein: Q9BQI4

CCDC3, Coiled-coil domain-containing protein 3, humanhuman

Predictions only

Length 270 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC3Q9BQI4 NTS-203ENST00000551529 801 ntTSL 3 BASIC2.82□□□□□ -1.96
CCDC3Q9BQI4 LINC01570-201ENST00000561572 434 ntTSL 3 BASIC2.82□□□□□ -1.96
CCDC3Q9BQI4 MAFTRR-204ENST00000568389 506 ntTSL 4 BASIC2.82□□□□□ -1.96
CCDC3Q9BQI4 EIF1P4-201ENST00000572664 335 ntBASIC2.82□□□□□ -1.96
CCDC3Q9BQI4 MTND1P15-201ENST00000579262 949 ntBASIC2.82□□□□□ -1.96
CCDC3Q9BQI4 AC024619.4-201ENST00000580924 316 ntBASIC2.82□□□□□ -1.96
CCDC3Q9BQI4 MIR4506-201ENST00000584693 77 ntBASIC2.82□□□□□ -1.96
CCDC3Q9BQI4 AC078795.2-201ENST00000602835 1252 ntBASIC2.82□□□□□ -1.96
CCDC3Q9BQI4 AL035413.2-201ENST00000604801 525 ntBASIC2.82□□□□□ -1.96
CCDC3Q9BQI4 C17orf112-201ENST00000623702 835 ntTSL 2 BASIC2.82□□□□□ -1.96
CCDC3Q9BQI4 AC068880.5-201ENST00000624331 290 ntBASIC2.82□□□□□ -1.96
CCDC3Q9BQI4 SEPT14P19-202ENST00000632397 370 ntTSL 3 BASIC2.82□□□□□ -1.96
CCDC3Q9BQI4 AC004944.1-201ENST00000517807 3059 ntBASIC2.82□□□□□ -1.96
CCDC3Q9BQI4 IL33-203ENST00000456383 2501 ntTSL 5 BASIC2.82□□□□□ -1.96
CCDC3Q9BQI4 OR9G4-203ENST00000641581 2603 ntAPPRIS P1 BASIC2.82□□□□□ -1.96
CCDC3Q9BQI4 AKAP9-202ENST00000358100 10309 ntTSL 1 (best) BASIC2.81□□□□□ -1.96
CCDC3Q9BQI4 FTX-214ENST00000638437 12267 ntTSL 5 BASIC2.81□□□□□ -1.96
CCDC3Q9BQI4 UBE2L2-201ENST00000254302 429 ntBASIC2.81□□□□□ -1.96
CCDC3Q9BQI4 AC062016.1-201ENST00000355719 319 ntBASIC2.81□□□□□ -1.96
CCDC3Q9BQI4 RNU6-1120P-201ENST00000362988 108 ntBASIC2.81□□□□□ -1.96
CCDC3Q9BQI4 RNU6-282P-201ENST00000365357 103 ntBASIC2.81□□□□□ -1.96
CCDC3Q9BQI4 CD24P4-201ENST00000382840 243 ntBASIC2.81□□□□□ -1.96
CCDC3Q9BQI4 RNU6-301P-201ENST00000384277 107 ntBASIC2.81□□□□□ -1.96
CCDC3Q9BQI4 RNU6-140P-201ENST00000384566 108 ntBASIC2.81□□□□□ -1.96
CCDC3Q9BQI4 MIR325-201ENST00000385260 98 ntBASIC2.81□□□□□ -1.96
CCDC3Q9BQI4 AL365356.1-201ENST00000411512 736 ntTSL 3 BASIC2.81□□□□□ -1.96
CCDC3Q9BQI4 AL365277.2-201ENST00000415255 551 ntTSL 3 BASIC2.81□□□□□ -1.96
CCDC3Q9BQI4 AF241725.1-201ENST00000416182 480 ntTSL 3 BASIC2.81□□□□□ -1.96
CCDC3Q9BQI4 AFDN-AS1-202ENST00000417244 182 ntTSL 2 BASIC2.81□□□□□ -1.96
CCDC3Q9BQI4 AL136322.1-201ENST00000422250 548 ntTSL 4 BASIC2.81□□□□□ -1.96
CCDC3Q9BQI4 AL731684.2-201ENST00000426839 333 ntTSL 5 BASIC2.81□□□□□ -1.96
CCDC3Q9BQI4 MTND3P21-201ENST00000433774 331 ntBASIC2.81□□□□□ -1.96
CCDC3Q9BQI4 RPL37P6-201ENST00000460682 294 ntBASIC2.81□□□□□ -1.96
CCDC3Q9BQI4 AC116562.3-201ENST00000506136 177 ntBASIC2.81□□□□□ -1.96
CCDC3Q9BQI4 AC012413.1-201ENST00000521294 519 ntTSL 2 BASIC2.81□□□□□ -1.96
CCDC3Q9BQI4 AC113145.1-201ENST00000522408 412 ntTSL 5 BASIC2.81□□□□□ -1.96
CCDC3Q9BQI4 AL358937.1-201ENST00000524512 336 ntTSL 2 BASIC2.81□□□□□ -1.96
CCDC3Q9BQI4 AC068587.5-201ENST00000528506 175 ntBASIC2.81□□□□□ -1.96
CCDC3Q9BQI4 AC091047.1-201ENST00000533344 552 ntTSL 4 BASIC2.81□□□□□ -1.96
CCDC3Q9BQI4 AC008114.1-201ENST00000544122 427 ntTSL 2 BASIC2.81□□□□□ -1.96
CCDC3Q9BQI4 G2E3-AS1-202ENST00000550118 609 ntTSL 5 BASIC2.81□□□□□ -1.96
CCDC3Q9BQI4 G2E3-AS1-204ENST00000552511 402 ntTSL 2 BASIC2.81□□□□□ -1.96
CCDC3Q9BQI4 AC023510.1-201ENST00000555862 490 ntTSL 2 BASIC2.81□□□□□ -1.96
CCDC3Q9BQI4 AL359212.1-201ENST00000556608 614 ntBASIC2.81□□□□□ -1.96
CCDC3Q9BQI4 AC074052.2-201ENST00000562516 214 ntTSL 3 BASIC2.81□□□□□ -1.96
CCDC3Q9BQI4 AC026462.2-201ENST00000565771 286 ntTSL 2 BASIC2.81□□□□□ -1.96
CCDC3Q9BQI4 AC024153.1-201ENST00000603103 365 ntBASIC2.81□□□□□ -1.96
CCDC3Q9BQI4 AL139286.2-201ENST00000606838 396 ntBASIC2.81□□□□□ -1.96
CCDC3Q9BQI4 uc_338.11-201ENST00000619132 160 ntBASIC2.81□□□□□ -1.96
CCDC3Q9BQI4 AL589994.2-201ENST00000621124 579 ntBASIC2.81□□□□□ -1.96
CCDC3Q9BQI4 PRKAA2-201ENST00000371244 9347 ntAPPRIS P2 TSL 1 (best) BASIC2.81□□□□□ -1.96
CCDC3Q9BQI4 CPD-202ENST00000543464 4007 ntTSL 2 BASIC2.81□□□□□ -1.96
CCDC3Q9BQI4 MUC7-202ENST00000413702 2540 ntAPPRIS P2 TSL 4 BASIC2.81□□□□□ -1.96
CCDC3Q9BQI4 ZMYM1-201ENST00000359858 4175 ntAPPRIS P1 TSL 1 (best) BASIC2.8□□□□□ -1.96
CCDC3Q9BQI4 FNBP1L-203ENST00000370253 3889 ntAPPRIS ALT1 TSL 5 BASIC2.8□□□□□ -1.96
CCDC3Q9BQI4 MIR148B-201ENST00000362252 99 ntBASIC2.8□□□□□ -1.96
CCDC3Q9BQI4 RNU6-188P-201ENST00000364207 107 ntBASIC2.8□□□□□ -1.96
CCDC3Q9BQI4 RNA5SP126-201ENST00000365092 109 ntBASIC2.8□□□□□ -1.96
CCDC3Q9BQI4 Y_RNA.534-201ENST00000384599 112 ntBASIC2.8□□□□□ -1.96
CCDC3Q9BQI4 RNU6-606P-201ENST00000384721 111 ntBASIC2.8□□□□□ -1.96
CCDC3Q9BQI4 MIR454-201ENST00000390180 115 ntBASIC2.8□□□□□ -1.96
CCDC3Q9BQI4 MIR888-201ENST00000401186 77 ntBASIC2.8□□□□□ -1.96
CCDC3Q9BQI4 NUP35P1-201ENST00000422734 947 ntBASIC2.8□□□□□ -1.96
CCDC3Q9BQI4 TIMM9P3-201ENST00000428659 274 ntBASIC2.8□□□□□ -1.96
CCDC3Q9BQI4 AC007919.1-201ENST00000429380 217 ntBASIC2.8□□□□□ -1.96
CCDC3Q9BQI4 MTATP6P16-201ENST00000434543 526 ntBASIC2.8□□□□□ -1.96
CCDC3Q9BQI4 AC007179.2-207ENST00000435557 556 ntTSL 4 BASIC2.8□□□□□ -1.96
CCDC3Q9BQI4 MTND1P34-201ENST00000438556 671 ntBASIC2.8□□□□□ -1.96
CCDC3Q9BQI4 AC025428.1-201ENST00000444137 403 ntTSL 3 BASIC2.8□□□□□ -1.96
CCDC3Q9BQI4 ITGA9-AS1-208ENST00000449586 726 ntTSL 3 BASIC2.8□□□□□ -1.96
CCDC3Q9BQI4 AC010099.1-201ENST00000455434 375 ntBASIC2.8□□□□□ -1.96
CCDC3Q9BQI4 AL031183.1-201ENST00000457667 207 ntBASIC2.8□□□□□ -1.96
CCDC3Q9BQI4 RN7SL429P-201ENST00000479090 223 ntBASIC2.8□□□□□ -1.96
CCDC3Q9BQI4 RN7SL489P-201ENST00000486185 223 ntBASIC2.8□□□□□ -1.96
CCDC3Q9BQI4 RN7SL327P-201ENST00000488659 223 ntBASIC2.8□□□□□ -1.96
CCDC3Q9BQI4 RNU6-720P-201ENST00000516363 108 ntBASIC2.8□□□□□ -1.96
CCDC3Q9BQI4 RNA5SP471-201ENST00000516971 106 ntBASIC2.8□□□□□ -1.96
CCDC3Q9BQI4 RNA5SP290-201ENST00000517133 127 ntBASIC2.8□□□□□ -1.96
CCDC3Q9BQI4 NCRNA00250-201ENST00000519500 519 ntTSL 4 BASIC2.8□□□□□ -1.96
CCDC3Q9BQI4 OR5B19P-201ENST00000531766 928 ntBASIC2.8□□□□□ -1.96
CCDC3Q9BQI4 AP000790.2-201ENST00000534388 522 ntTSL 3 BASIC2.8□□□□□ -1.96
CCDC3Q9BQI4 AP003034.1-201ENST00000534621 422 ntBASIC2.8□□□□□ -1.96
CCDC3Q9BQI4 AC087318.1-201ENST00000536786 389 ntTSL 3 BASIC2.8□□□□□ -1.96
CCDC3Q9BQI4 AC091534.1-202ENST00000549953 468 ntTSL 5 BASIC2.8□□□□□ -1.96
CCDC3Q9BQI4 AC084756.1-201ENST00000558237 606 ntTSL 5 BASIC2.8□□□□□ -1.96
CCDC3Q9BQI4 AC009558.1-201ENST00000561174 581 ntTSL 4 BASIC2.8□□□□□ -1.96
CCDC3Q9BQI4 AC004223.2-201ENST00000590309 544 ntBASIC2.8□□□□□ -1.96
CCDC3Q9BQI4 AC017083.3-201ENST00000609955 700 ntBASIC2.8□□□□□ -1.96
CCDC3Q9BQI4 RN7SL853P-201ENST00000617250 223 ntBASIC2.8□□□□□ -1.96
CCDC3Q9BQI4 LINC01002-215ENST00000632203 314 ntTSL 5 BASIC2.8□□□□□ -1.96
CCDC3Q9BQI4 FOXP2-210ENST00000403559 6415 ntTSL 2 BASIC2.8□□□□□ -1.96
CCDC3Q9BQI4 TFEC-202ENST00000320239 6605 ntAPPRIS P1 TSL 1 (best) BASIC2.79□□□□□ -1.96
CCDC3Q9BQI4 LIPI-203ENST00000536861 1529 ntAPPRIS ALT2 TSL 1 (best) BASIC2.79□□□□□ -1.96
CCDC3Q9BQI4 ZNF680-202ENST00000447137 2159 ntTSL 2 BASIC2.79□□□□□ -1.96
CCDC3Q9BQI4 DEFB114-201ENST00000322066 253 ntAPPRIS P1 TSL 1 (best) BASIC2.79□□□□□ -1.96
CCDC3Q9BQI4 FTLP6-201ENST00000355274 422 ntBASIC2.79□□□□□ -1.96
CCDC3Q9BQI4 MDM2-207ENST00000360430 891 ntTSL 1 (best) BASIC2.79□□□□□ -1.96
CCDC3Q9BQI4 RNU6-61P-201ENST00000365528 109 ntBASIC2.79□□□□□ -1.96
CCDC3Q9BQI4 Y_RNA.367-201ENST00000365544 101 ntBASIC2.79□□□□□ -1.96
CCDC3Q9BQI4 RPS27L-202ENST00000411926 528 ntTSL 3 BASIC2.79□□□□□ -1.96
Retrieved 100 of 98,524 protein–RNA pairs in 78.1 ms