Protein–RNA interactions for Protein: Q96CM3

RPUSD4, Mitochondrial RNA pseudouridine synthase RPUSD4, humanhuman

Known RBP Predictions only

Length 377 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RPUSD4Q96CM3 MIR301A-201ENST00000385261 86 ntBASIC2.1□□□□□ -2.07
RPUSD4Q96CM3 MIR767-201ENST00000390228 109 ntBASIC2.1□□□□□ -2.07
RPUSD4Q96CM3 SNORA40.3-201ENST00000390964 122 ntBASIC2.1□□□□□ -2.07
RPUSD4Q96CM3 PPP3R1-202ENST00000409377 684 ntTSL 3 BASIC2.1□□□□□ -2.07
RPUSD4Q96CM3 EDNRB-AS1-201ENST00000422405 601 ntTSL 5 BASIC2.1□□□□□ -2.07
RPUSD4Q96CM3 ABCC5-AS1-201ENST00000422946 469 ntTSL 2 BASIC2.1□□□□□ -2.07
RPUSD4Q96CM3 AL451062.2-201ENST00000427515 271 ntBASIC2.1□□□□□ -2.07
RPUSD4Q96CM3 AL135923.2-201ENST00000435444 501 ntTSL 2 BASIC2.1□□□□□ -2.07
RPUSD4Q96CM3 AL353706.1-201ENST00000436728 494 ntBASIC2.1□□□□□ -2.07
RPUSD4Q96CM3 AL590399.3-201ENST00000438072 543 ntTSL 5 BASIC2.1□□□□□ -2.07
RPUSD4Q96CM3 AL022238.1-201ENST00000442557 355 ntBASIC2.1□□□□□ -2.07
RPUSD4Q96CM3 LINC01162-201ENST00000447262 447 ntTSL 5 BASIC2.1□□□□□ -2.07
RPUSD4Q96CM3 GAPDHP17-201ENST00000449858 1001 ntBASIC2.1□□□□□ -2.07
RPUSD4Q96CM3 RGS5-217ENST00000451759 835 ntTSL 3 BASIC2.1□□□□□ -2.07
RPUSD4Q96CM3 HTR2A-AS1-202ENST00000452352 384 ntTSL 2 BASIC2.1□□□□□ -2.07
RPUSD4Q96CM3 NDUFAF4P3-201ENST00000456468 525 ntBASIC2.1□□□□□ -2.07
RPUSD4Q96CM3 AL672167.3-201ENST00000465951 960 ntBASIC2.1□□□□□ -2.07
RPUSD4Q96CM3 RPL31P41-201ENST00000477967 372 ntBASIC2.1□□□□□ -2.07
RPUSD4Q96CM3 MRPL42P6-201ENST00000486397 371 ntBASIC2.1□□□□□ -2.07
RPUSD4Q96CM3 PDCD10-214ENST00000487947 716 ntTSL 5 BASIC2.1□□□□□ -2.07
RPUSD4Q96CM3 AC109927.2-201ENST00000506416 303 ntBASIC2.1□□□□□ -2.07
RPUSD4Q96CM3 VCAN-AS1-202ENST00000513899 453 ntTSL 3 BASIC2.1□□□□□ -2.07
RPUSD4Q96CM3 AC093206.1-201ENST00000515364 497 ntTSL 3 BASIC2.1□□□□□ -2.07
RPUSD4Q96CM3 Vault.3-201ENST00000516676 95 ntBASIC2.1□□□□□ -2.07
RPUSD4Q96CM3 SNORD19.2-201ENST00000516978 73 ntBASIC2.1□□□□□ -2.07
RPUSD4Q96CM3 AC090796.1-201ENST00000520370 567 ntTSL 4 BASIC2.1□□□□□ -2.07
RPUSD4Q96CM3 AL049775.2-201ENST00000557547 558 ntTSL 4 BASIC2.1□□□□□ -2.07
RPUSD4Q96CM3 AC010546.1-201ENST00000569391 485 ntBASIC2.1□□□□□ -2.07
RPUSD4Q96CM3 AC131274.4-201ENST00000577879 398 ntTSL 3 BASIC2.1□□□□□ -2.07
RPUSD4Q96CM3 AC069061.2-202ENST00000580280 357 ntTSL 3 BASIC2.1□□□□□ -2.07
RPUSD4Q96CM3 MIR5694-201ENST00000581190 76 ntBASIC2.1□□□□□ -2.07
RPUSD4Q96CM3 AC005357.2-201ENST00000586473 583 ntTSL 2 BASIC2.1□□□□□ -2.07
RPUSD4Q96CM3 AC110760.3-201ENST00000598794 467 ntBASIC2.1□□□□□ -2.07
RPUSD4Q96CM3 AL035413.2-201ENST00000604801 525 ntBASIC2.1□□□□□ -2.07
RPUSD4Q96CM3 AC090578.1-201ENST00000604955 591 ntBASIC2.1□□□□□ -2.07
RPUSD4Q96CM3 AL137847.3-201ENST00000611521 109 ntBASIC2.1□□□□□ -2.07
RPUSD4Q96CM3 NCRUPAR_2.1-201ENST00000616308 99 ntBASIC2.1□□□□□ -2.07
RPUSD4Q96CM3 AL589994.2-201ENST00000621124 579 ntBASIC2.1□□□□□ -2.07
RPUSD4Q96CM3 AC022079.1-201ENST00000621546 602 ntBASIC2.1□□□□□ -2.07
RPUSD4Q96CM3 AC138649.3-201ENST00000622154 254 ntBASIC2.1□□□□□ -2.07
RPUSD4Q96CM3 MIR3651-201ENST00000630427 90 ntBASIC2.1□□□□□ -2.07
RPUSD4Q96CM3 CCDC82-202ENST00000423339 1878 ntAPPRIS P2 TSL 1 (best) BASIC2.09□□□□□ -2.07
RPUSD4Q96CM3 PRB2-201ENST00000389362 1429 ntAPPRIS P2 TSL 5 BASIC2.09□□□□□ -2.07
RPUSD4Q96CM3 Y_RNA.22-201ENST00000362492 102 ntBASIC2.09□□□□□ -2.07
RPUSD4Q96CM3 Y_RNA.77-201ENST00000362962 107 ntBASIC2.09□□□□□ -2.07
RPUSD4Q96CM3 SNORA68.1-201ENST00000364537 132 ntBASIC2.09□□□□□ -2.07
RPUSD4Q96CM3 RNU6-169P-201ENST00000365336 107 ntBASIC2.09□□□□□ -2.07
RPUSD4Q96CM3 RNU6-39P-201ENST00000384344 107 ntBASIC2.09□□□□□ -2.07
RPUSD4Q96CM3 SNORA48.7-201ENST00000391302 135 ntBASIC2.09□□□□□ -2.07
RPUSD4Q96CM3 MORF4L1P6-201ENST00000418771 268 ntBASIC2.09□□□□□ -2.07
RPUSD4Q96CM3 ELOCP4-201ENST00000420090 333 ntBASIC2.09□□□□□ -2.07
RPUSD4Q96CM3 AC007283.2-201ENST00000424739 197 ntBASIC2.09□□□□□ -2.07
RPUSD4Q96CM3 RPL7P37-201ENST00000425095 738 ntBASIC2.09□□□□□ -2.07
RPUSD4Q96CM3 AL138775.1-201ENST00000429539 575 ntTSL 1 (best) BASIC2.09□□□□□ -2.07
RPUSD4Q96CM3 AL356277.3-201ENST00000432484 618 ntTSL 3 BASIC2.09□□□□□ -2.07
RPUSD4Q96CM3 AL591212.2-201ENST00000433923 257 ntBASIC2.09□□□□□ -2.07
RPUSD4Q96CM3 MTND2P4-201ENST00000445034 1004 ntBASIC2.09□□□□□ -2.07
RPUSD4Q96CM3 HMGN2P10-201ENST00000448085 265 ntBASIC2.09□□□□□ -2.07
RPUSD4Q96CM3 LINC02077-201ENST00000465795 409 ntTSL 3 BASIC2.09□□□□□ -2.07
RPUSD4Q96CM3 RPS29P20-201ENST00000489592 171 ntBASIC2.09□□□□□ -2.07
RPUSD4Q96CM3 AC012055.2-201ENST00000504167 335 ntTSL 3 BASIC2.09□□□□□ -2.07
RPUSD4Q96CM3 RNU6ATAC13P-201ENST00000516152 131 ntBASIC2.09□□□□□ -2.07
RPUSD4Q96CM3 RNU6-914P-201ENST00000516749 109 ntBASIC2.09□□□□□ -2.07
RPUSD4Q96CM3 RNU6-1315P-201ENST00000517187 99 ntBASIC2.09□□□□□ -2.07
RPUSD4Q96CM3 AC090572.1-201ENST00000519251 160 ntBASIC2.09□□□□□ -2.07
RPUSD4Q96CM3 AC009902.1-201ENST00000519351 183 ntBASIC2.09□□□□□ -2.07
RPUSD4Q96CM3 AC103810.1-201ENST00000579873 453 ntBASIC2.09□□□□□ -2.07
RPUSD4Q96CM3 TCF4-AS2-201ENST00000586467 445 ntTSL 2 BASIC2.09□□□□□ -2.07
RPUSD4Q96CM3 AC024220.1-201ENST00000603675 484 ntBASIC2.09□□□□□ -2.07
RPUSD4Q96CM3 AL022154.1-201ENST00000604698 785 ntBASIC2.09□□□□□ -2.07
RPUSD4Q96CM3 MTND4LP5-201ENST00000605152 292 ntBASIC2.09□□□□□ -2.07
RPUSD4Q96CM3 AC087752.4-201ENST00000605911 462 ntBASIC2.09□□□□□ -2.07
RPUSD4Q96CM3 AC022893.3-201ENST00000607665 437 ntBASIC2.09□□□□□ -2.07
RPUSD4Q96CM3 AC013562.2-201ENST00000611632 603 ntBASIC2.09□□□□□ -2.07
RPUSD4Q96CM3 AP001486.3-201ENST00000615334 372 ntBASIC2.09□□□□□ -2.07
RPUSD4Q96CM3 AL158063.1-201ENST00000615349 536 ntBASIC2.09□□□□□ -2.07
RPUSD4Q96CM3 UCA1.1-201ENST00000620952 75 ntBASIC2.09□□□□□ -2.07
RPUSD4Q96CM3 AC103710.2-202ENST00000641454 2853 ntBASIC2.09□□□□□ -2.08
RPUSD4Q96CM3 OGN-201ENST00000262551 2971 ntAPPRIS P1 TSL 5 BASIC2.09□□□□□ -2.08
RPUSD4Q96CM3 EBAG9-210ENST00000620557 2186 ntAPPRIS P1 TSL 3 BASIC2.09□□□□□ -2.08
RPUSD4Q96CM3 MIER3-202ENST00000381199 5188 ntAPPRIS ALT1 TSL 1 (best) BASIC2.09□□□□□ -2.08
RPUSD4Q96CM3 TEX21P-201ENST00000447107 1476 ntBASIC2.08□□□□□ -2.08
RPUSD4Q96CM3 OR8K3-203ENST00000641662 2438 ntAPPRIS P1 BASIC2.08□□□□□ -2.08
RPUSD4Q96CM3 MLIP-AS1-201ENST00000434196 1534 ntTSL 2 BASIC2.08□□□□□ -2.08
RPUSD4Q96CM3 SNORA20.2-201ENST00000383922 131 ntBASIC2.08□□□□□ -2.08
RPUSD4Q96CM3 RNU6-190P-201ENST00000384154 102 ntBASIC2.08□□□□□ -2.08
RPUSD4Q96CM3 AP003170.3-201ENST00000399123 158 ntTSL 5 BASIC2.08□□□□□ -2.08
RPUSD4Q96CM3 ERMN-204ENST00000409925 556 ntTSL 4 BASIC2.08□□□□□ -2.08
RPUSD4Q96CM3 AF241725.1-201ENST00000416182 480 ntTSL 3 BASIC2.08□□□□□ -2.08
RPUSD4Q96CM3 AL592045.1-201ENST00000429867 352 ntBASIC2.08□□□□□ -2.08
RPUSD4Q96CM3 LINC02532-205ENST00000430094 628 ntTSL 5 BASIC2.08□□□□□ -2.08
RPUSD4Q96CM3 AL445488.1-202ENST00000430623 545 ntTSL 3 BASIC2.08□□□□□ -2.08
RPUSD4Q96CM3 MYL8P-204ENST00000431574 518 ntBASIC2.08□□□□□ -2.08
RPUSD4Q96CM3 AC104850.1-201ENST00000435940 476 ntBASIC2.08□□□□□ -2.08
RPUSD4Q96CM3 AC073614.1-201ENST00000438690 650 ntBASIC2.08□□□□□ -2.08
RPUSD4Q96CM3 RPS15AP27-201ENST00000449183 343 ntBASIC2.08□□□□□ -2.08
RPUSD4Q96CM3 CACYBPP2-201ENST00000453625 678 ntBASIC2.08□□□□□ -2.08
RPUSD4Q96CM3 AL109763.1-201ENST00000455391 461 ntTSL 2 BASIC2.08□□□□□ -2.08
RPUSD4Q96CM3 AC133134.1-201ENST00000466800 359 ntBASIC2.08□□□□□ -2.08
RPUSD4Q96CM3 TRBV1-201ENST00000476502 284 ntBASIC2.08□□□□□ -2.08
Retrieved 100 of 98,524 protein–RNA pairs in 104.7 ms