Protein–RNA interactions for Protein: P28068

HLA-DMB, HLA class II histocompatibility antigen, DM beta chain, humanhuman

Predictions only

Length 263 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DMBP28068 LINC02101-201ENST00000505861 725 ntTSL 4 BASIC1.35□□□□□ -2.19
HLA-DMBP28068 AC008628.1-201ENST00000508663 265 ntBASIC1.35□□□□□ -2.19
HLA-DMBP28068 TMEM132D-AS1-202ENST00000510001 293 ntTSL 1 (best) BASIC1.35□□□□□ -2.19
HLA-DMBP28068 LINC02472-201ENST00000512268 575 ntTSL 2 BASIC1.35□□□□□ -2.19
HLA-DMBP28068 MTND5P13-201ENST00000513046 1079 ntBASIC1.35□□□□□ -2.19
HLA-DMBP28068 AC093766.1-202ENST00000513400 718 ntTSL 3 BASIC1.35□□□□□ -2.19
HLA-DMBP28068 AC110760.3-202ENST00000515177 371 ntBASIC1.35□□□□□ -2.19
HLA-DMBP28068 LINC01216-201ENST00000515728 824 ntTSL 5 BASIC1.35□□□□□ -2.19
HLA-DMBP28068 RNA5SP165-201ENST00000517142 115 ntBASIC1.35□□□□□ -2.19
HLA-DMBP28068 CYB5AP5-201ENST00000549779 389 ntBASIC1.35□□□□□ -2.19
HLA-DMBP28068 AC233702.2-202ENST00000562547 291 ntBASIC1.35□□□□□ -2.19
HLA-DMBP28068 MIR3126-201ENST00000577443 74 ntBASIC1.35□□□□□ -2.19
HLA-DMBP28068 MIR4299-201ENST00000577899 72 ntBASIC1.35□□□□□ -2.19
HLA-DMBP28068 MIR3167-201ENST00000579623 85 ntBASIC1.35□□□□□ -2.19
HLA-DMBP28068 AC023394.2-201ENST00000581987 792 ntTSL 5 BASIC1.35□□□□□ -2.19
HLA-DMBP28068 AC005034.5-201ENST00000604219 466 ntBASIC1.35□□□□□ -2.19
HLA-DMBP28068 AC079610.3-201ENST00000606960 147 ntTSL 3 BASIC1.35□□□□□ -2.19
HLA-DMBP28068 AF129408.1-201ENST00000608767 431 ntBASIC1.35□□□□□ -2.19
HLA-DMBP28068 AC009237.15-201ENST00000610252 501 ntBASIC1.35□□□□□ -2.19
HLA-DMBP28068 AL353997.5-201ENST00000618886 171 ntBASIC1.35□□□□□ -2.19
HLA-DMBP28068 ZNF702P-202ENST00000434269 1966 ntBASIC1.35□□□□□ -2.19
HLA-DMBP28068 TDRD15-202ENST00000622654 5805 ntAPPRIS P1 BASIC1.35□□□□□ -2.19
HLA-DMBP28068 SLITRK6-201ENST00000400286 4318 ntAPPRIS P1 TSL 1 (best) BASIC1.34□□□□□ -2.19
HLA-DMBP28068 AC009975.1-201ENST00000634588 2698 ntTSL 5 BASIC1.34□□□□□ -2.19
HLA-DMBP28068 EMCN-202ENST00000305864 1575 ntTSL 1 (best) BASIC1.34□□□□□ -2.19
HLA-DMBP28068 RNU6-1167P-201ENST00000363227 94 ntBASIC1.34□□□□□ -2.19
HLA-DMBP28068 RNA5SP99-201ENST00000364020 114 ntBASIC1.34□□□□□ -2.19
HLA-DMBP28068 SNORD48-201ENST00000364953 64 ntBASIC1.34□□□□□ -2.19
HLA-DMBP28068 RNU6-19P-201ENST00000384718 107 ntBASIC1.34□□□□□ -2.19
HLA-DMBP28068 MIR95-201ENST00000385072 81 ntBASIC1.34□□□□□ -2.19
HLA-DMBP28068 TRAJ11-201ENST00000390526 60 ntAPPRIS P1 BASIC1.34□□□□□ -2.19
HLA-DMBP28068 RNU6-482P-201ENST00000391068 107 ntBASIC1.34□□□□□ -2.19
HLA-DMBP28068 5S_rRNA.2-201ENST00000391293 112 ntBASIC1.34□□□□□ -2.19
HLA-DMBP28068 RPL7P27-201ENST00000403775 720 ntBASIC1.34□□□□□ -2.19
HLA-DMBP28068 RNU2-68P-201ENST00000410878 191 ntBASIC1.34□□□□□ -2.19
HLA-DMBP28068 RPL23AP39-201ENST00000415533 405 ntBASIC1.34□□□□□ -2.19
HLA-DMBP28068 AF274573.2-201ENST00000437772 520 ntTSL 5 BASIC1.34□□□□□ -2.19
HLA-DMBP28068 AC007677.1-201ENST00000445757 515 ntBASIC1.34□□□□□ -2.19
HLA-DMBP28068 AL008723.1-201ENST00000452181 590 ntTSL 5 BASIC1.34□□□□□ -2.19
HLA-DMBP28068 PGRMC2-204ENST00000503872 1028 ntTSL 3 BASIC1.34□□□□□ -2.19
HLA-DMBP28068 AC093801.2-201ENST00000503966 1050 ntBASIC1.34□□□□□ -2.19
HLA-DMBP28068 HDAC2-AS2-206ENST00000517965 850 ntTSL 3 BASIC1.34□□□□□ -2.19
HLA-DMBP28068 AC090796.1-201ENST00000520370 567 ntTSL 4 BASIC1.34□□□□□ -2.19
HLA-DMBP28068 AC069133.1-201ENST00000522857 566 ntTSL 4 BASIC1.34□□□□□ -2.19
HLA-DMBP28068 OR8K2P-201ENST00000524645 927 ntBASIC1.34□□□□□ -2.19
HLA-DMBP28068 AP002884.4-201ENST00000527589 594 ntTSL 3 BASIC1.34□□□□□ -2.19
HLA-DMBP28068 MYL12A-202ENST00000536605 899 ntAPPRIS P1 TSL 1 (best) BASIC1.34□□□□□ -2.19
HLA-DMBP28068 AK6P1-201ENST00000540219 478 ntBASIC1.34□□□□□ -2.19
HLA-DMBP28068 MYL12A-209ENST00000580887 899 ntTSL 1 (best) BASIC1.34□□□□□ -2.19
HLA-DMBP28068 AC009977.1-201ENST00000586015 570 ntBASIC1.34□□□□□ -2.19
HLA-DMBP28068 AF038458.1-201ENST00000588406 262 ntBASIC1.34□□□□□ -2.19
HLA-DMBP28068 ZNF616-202ENST00000596290 568 ntTSL 4 BASIC1.34□□□□□ -2.19
HLA-DMBP28068 AC097717.1-211ENST00000600604 687 ntTSL 5 BASIC1.34□□□□□ -2.19
HLA-DMBP28068 BBIP1P1-201ENST00000602999 279 ntBASIC1.34□□□□□ -2.19
HLA-DMBP28068 AL109811.3-202ENST00000612387 651 ntTSL 3 BASIC1.34□□□□□ -2.19
HLA-DMBP28068 AC073052.2-202ENST00000622296 775 ntTSL 5 BASIC1.34□□□□□ -2.19
HLA-DMBP28068 AC099063.3-201ENST00000642066 185 ntBASIC1.34□□□□□ -2.19
HLA-DMBP28068 AL390862.1-201ENST00000635467 1469 ntBASIC1.34□□□□□ -2.19
HLA-DMBP28068 PIK3C2G-203ENST00000535651 2497 ntTSL 5 BASIC1.33□□□□□ -2.2
HLA-DMBP28068 AC092447.10-201ENST00000620607 1652 ntBASIC1.33□□□□□ -2.2
HLA-DMBP28068 MBNL3-212ENST00000538204 11294 ntTSL 1 (best) BASIC1.33□□□□□ -2.2
HLA-DMBP28068 MIR147B-201ENST00000390185 80 ntBASIC1.33□□□□□ -2.2
HLA-DMBP28068 AL139397.2-201ENST00000404529 772 ntBASIC1.33□□□□□ -2.2
HLA-DMBP28068 RNA5SP450-201ENST00000411206 102 ntBASIC1.33□□□□□ -2.2
HLA-DMBP28068 AL109914.1-201ENST00000414740 146 ntTSL 5 BASIC1.33□□□□□ -2.2
HLA-DMBP28068 LURAP1L-AS1-201ENST00000417638 799 ntTSL 3 BASIC1.33□□□□□ -2.2
HLA-DMBP28068 PGBD4P6-201ENST00000421501 610 ntBASIC1.33□□□□□ -2.2
HLA-DMBP28068 AL353729.1-201ENST00000425044 720 ntBASIC1.33□□□□□ -2.2
HLA-DMBP28068 C1DP1-201ENST00000426049 402 ntBASIC1.33□□□□□ -2.2
HLA-DMBP28068 PTGES3P4-201ENST00000426243 356 ntBASIC1.33□□□□□ -2.2
HLA-DMBP28068 AL645568.3-201ENST00000433683 316 ntBASIC1.33□□□□□ -2.2
HLA-DMBP28068 IFNA20P-201ENST00000436840 528 ntBASIC1.33□□□□□ -2.2
HLA-DMBP28068 OR5H14-201ENST00000437310 1080 ntAPPRIS P1 BASIC1.33□□□□□ -2.2
HLA-DMBP28068 MTND5P14-201ENST00000441481 1267 ntBASIC1.33□□□□□ -2.2
HLA-DMBP28068 GSAP-208ENST00000441833 737 ntTSL 1 (best) BASIC1.33□□□□□ -2.2
HLA-DMBP28068 AC009238.1-201ENST00000442165 424 ntBASIC1.33□□□□□ -2.2
HLA-DMBP28068 LINC01594-201ENST00000445083 611 ntTSL 5 BASIC1.33□□□□□ -2.2
HLA-DMBP28068 AC009237.6-201ENST00000446969 424 ntBASIC1.33□□□□□ -2.2
HLA-DMBP28068 FABP5P15-201ENST00000453566 214 ntBASIC1.33□□□□□ -2.2
HLA-DMBP28068 LINC01075-201ENST00000455977 370 ntTSL 3 BASIC1.33□□□□□ -2.2
HLA-DMBP28068 HMGN2P23-201ENST00000456759 269 ntBASIC1.33□□□□□ -2.2
HLA-DMBP28068 RPL7P18-201ENST00000478965 734 ntBASIC1.33□□□□□ -2.2
HLA-DMBP28068 AL365273.2-201ENST00000491114 492 ntAPPRIS P1 TSL 5 BASIC1.33□□□□□ -2.2
HLA-DMBP28068 RPL22P13-201ENST00000493291 347 ntBASIC1.33□□□□□ -2.2
HLA-DMBP28068 AC104685.1-201ENST00000502445 371 ntBASIC1.33□□□□□ -2.2
HLA-DMBP28068 FAM92A1P2-202ENST00000504766 877 ntBASIC1.33□□□□□ -2.2
HLA-DMBP28068 AC108037.1-201ENST00000514103 423 ntTSL 3 BASIC1.33□□□□□ -2.2
HLA-DMBP28068 SMURF2P1-201ENST00000514992 481 ntBASIC1.33□□□□□ -2.2
HLA-DMBP28068 AC108449.1-202ENST00000517632 478 ntTSL 3 BASIC1.33□□□□□ -2.2
HLA-DMBP28068 AC107953.1-201ENST00000522216 297 ntBASIC1.33□□□□□ -2.2
HLA-DMBP28068 CA1-215ENST00000522389 551 ntTSL 3 BASIC1.33□□□□□ -2.2
HLA-DMBP28068 LINC01608-201ENST00000523557 544 ntTSL 4 BASIC1.33□□□□□ -2.2
HLA-DMBP28068 TMCO5B-203ENST00000529623 509 ntTSL 4 BASIC1.33□□□□□ -2.2
HLA-DMBP28068 DEFB130C-202ENST00000530001 230 ntBASIC1.33□□□□□ -2.2
HLA-DMBP28068 MIR3912-201ENST00000577566 105 ntBASIC1.33□□□□□ -2.2
HLA-DMBP28068 AL161798.1-201ENST00000604630 131 ntBASIC1.33□□□□□ -2.2
HLA-DMBP28068 AC007038.2-201ENST00000608095 740 ntBASIC1.33□□□□□ -2.2
HLA-DMBP28068 AC068506.1-202ENST00000613388 545 ntTSL 3 BASIC1.33□□□□□ -2.2
HLA-DMBP28068 GPR171-203ENST00000617554 960 ntAPPRIS P1 BASIC1.33□□□□□ -2.2
HLA-DMBP28068 AL109620.1-201ENST00000618738 1197 ntBASIC1.33□□□□□ -2.2
Retrieved 100 of 98,524 protein–RNA pairs in 93.4 ms