Protein–RNA interactions for Protein: P09429

HMGB1, High mobility group protein B1, humanhuman

Known RBP Predictions only

Length 215 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1P09429 AC133106.1-201ENST00000419029 397 ntTSL 3 BASIC3.93□□□□□ -1.78
HMGB1P09429 AL356134.1-201ENST00000419815 373 ntTSL 3 BASIC3.93□□□□□ -1.78
HMGB1P09429 AL121872.1-201ENST00000420327 281 ntTSL 5 BASIC3.93□□□□□ -1.78
HMGB1P09429 PGBD4P6-201ENST00000421501 610 ntBASIC3.93□□□□□ -1.78
HMGB1P09429 LINC01351-201ENST00000424735 526 ntTSL 2 BASIC3.93□□□□□ -1.78
HMGB1P09429 TOMM20P4-201ENST00000427861 435 ntBASIC3.93□□□□□ -1.78
HMGB1P09429 USP9YP29-201ENST00000445112 563 ntBASIC3.93□□□□□ -1.78
HMGB1P09429 Z99127.3-201ENST00000448158 395 ntBASIC3.93□□□□□ -1.78
HMGB1P09429 RNU6-956P-201ENST00000458868 103 ntBASIC3.93□□□□□ -1.78
HMGB1P09429 AC117462.1-201ENST00000461186 554 ntTSL 4 BASIC3.93□□□□□ -1.78
HMGB1P09429 AC080014.1-201ENST00000496877 1201 ntBASIC3.93□□□□□ -1.78
HMGB1P09429 LINC01861-201ENST00000509568 537 ntTSL 4 BASIC3.93□□□□□ -1.78
HMGB1P09429 OR5AQ1P-201ENST00000527596 927 ntBASIC3.93□□□□□ -1.78
HMGB1P09429 RNASEH2B-AS1-206ENST00000601286 657 ntTSL 5 BASIC3.93□□□□□ -1.78
HMGB1P09429 AL138889.2-201ENST00000603883 242 ntBASIC3.93□□□□□ -1.78
HMGB1P09429 AC025811.1-201ENST00000604312 472 ntBASIC3.93□□□□□ -1.78
HMGB1P09429 AC005696.2-201ENST00000610120 626 ntTSL 3 BASIC3.93□□□□□ -1.78
HMGB1P09429 MIR6798-201ENST00000612887 67 ntBASIC3.93□□□□□ -1.78
HMGB1P09429 AC072046.2-201ENST00000618366 268 ntBASIC3.93□□□□□ -1.78
HMGB1P09429 AL390237.1-201ENST00000404226 1415 ntBASIC3.93□□□□□ -1.78
HMGB1P09429 TSLP-202ENST00000379706 2411 ntTSL 1 (best) BASIC3.93□□□□□ -1.78
HMGB1P09429 HDX-206ENST00000506585 6158 ntTSL 2 BASIC3.93□□□□□ -1.78
HMGB1P09429 ZBED5-201ENST00000413761 2512 ntAPPRIS P1 TSL 1 (best) BASIC3.92□□□□□ -1.78
HMGB1P09429 RRAS2-211ENST00000537760 2034 ntTSL 2 BASIC3.92□□□□□ -1.78
HMGB1P09429 RNU6-1097P-201ENST00000363586 107 ntBASIC3.92□□□□□ -1.78
HMGB1P09429 SNORD14B-201ENST00000364533 90 ntBASIC3.92□□□□□ -1.78
HMGB1P09429 RNU6-282P-201ENST00000365357 103 ntBASIC3.92□□□□□ -1.78
HMGB1P09429 MDM2-208ENST00000393410 732 ntTSL 1 (best) BASIC3.92□□□□□ -1.78
HMGB1P09429 MDM2-210ENST00000393413 657 ntTSL 1 (best) BASIC3.92□□□□□ -1.78
HMGB1P09429 U6atac.2-201ENST00000408644 118 ntBASIC3.92□□□□□ -1.78
HMGB1P09429 AC005162.2-201ENST00000411479 578 ntTSL 4 BASIC3.92□□□□□ -1.78
HMGB1P09429 EEF1A1P40-201ENST00000412883 573 ntBASIC3.92□□□□□ -1.78
HMGB1P09429 CYCSP48-201ENST00000417124 323 ntBASIC3.92□□□□□ -1.78
HMGB1P09429 AC092017.2-201ENST00000427600 362 ntBASIC3.92□□□□□ -1.78
HMGB1P09429 AC133104.1-201ENST00000429100 218 ntBASIC3.92□□□□□ -1.78
HMGB1P09429 MTCO3P5-201ENST00000433620 714 ntBASIC3.92□□□□□ -1.78
HMGB1P09429 AC008700.1-202ENST00000513657 468 ntTSL 5 BASIC3.92□□□□□ -1.78
HMGB1P09429 RNU6-685P-201ENST00000517088 95 ntBASIC3.92□□□□□ -1.78
HMGB1P09429 AC009163.5-201ENST00000575421 637 ntBASIC3.92□□□□□ -1.78
HMGB1P09429 LINC02210-208ENST00000585118 546 ntTSL 1 (best) BASIC3.92□□□□□ -1.78
HMGB1P09429 AC024153.1-201ENST00000603103 365 ntBASIC3.92□□□□□ -1.78
HMGB1P09429 AC006566.1-201ENST00000608943 513 ntBASIC3.92□□□□□ -1.78
HMGB1P09429 AL596220.1-201ENST00000622121 542 ntTSL 4 BASIC3.92□□□□□ -1.78
HMGB1P09429 SYCP2-201ENST00000357552 5567 ntAPPRIS P2 TSL 1 (best) BASIC3.92□□□□□ -1.78
HMGB1P09429 OFD1P6Y-202ENST00000451061 2724 ntBASIC3.92□□□□□ -1.78
HMGB1P09429 RNA5SP125-201ENST00000364843 120 ntBASIC3.91□□□□□ -1.78
HMGB1P09429 RNU6-108P-201ENST00000365558 107 ntBASIC3.91□□□□□ -1.78
HMGB1P09429 PTPRC-202ENST00000367364 1017 ntTSL 1 (best) BASIC3.91□□□□□ -1.78
HMGB1P09429 OR6C66P-201ENST00000414917 930 ntBASIC3.91□□□□□ -1.78
HMGB1P09429 AC138623.1-201ENST00000418060 216 ntBASIC3.91□□□□□ -1.78
HMGB1P09429 PIGFP2-201ENST00000421400 651 ntBASIC3.91□□□□□ -1.78
HMGB1P09429 LINC00368-201ENST00000422994 650 ntTSL 1 (best) BASIC3.91□□□□□ -1.78
HMGB1P09429 PCDH9-AS1-201ENST00000430861 532 ntTSL 2 BASIC3.91□□□□□ -1.78
HMGB1P09429 AL691515.1-201ENST00000432976 733 ntTSL 2 BASIC3.91□□□□□ -1.78
HMGB1P09429 AC000111.3-201ENST00000433478 193 ntBASIC3.91□□□□□ -1.78
HMGB1P09429 AC005019.1-201ENST00000436455 431 ntBASIC3.91□□□□□ -1.78
HMGB1P09429 AC092573.2-202ENST00000437243 336 ntTSL 3 BASIC3.91□□□□□ -1.78
HMGB1P09429 CST9LP2-201ENST00000437612 320 ntBASIC3.91□□□□□ -1.78
HMGB1P09429 AC009969.1-201ENST00000438726 172 ntBASIC3.91□□□□□ -1.78
HMGB1P09429 HIGD1AP2-201ENST00000446367 280 ntBASIC3.91□□□□□ -1.78
HMGB1P09429 VN1R34P-201ENST00000447387 883 ntBASIC3.91□□□□□ -1.78
HMGB1P09429 MTAPP1-201ENST00000489154 819 ntBASIC3.91□□□□□ -1.78
HMGB1P09429 AC104619.2-201ENST00000514293 646 ntTSL 3 BASIC3.91□□□□□ -1.78
HMGB1P09429 AC023442.3-201ENST00000532199 495 ntTSL 2 BASIC3.91□□□□□ -1.78
HMGB1P09429 AC090023.1-201ENST00000545750 443 ntTSL 3 BASIC3.91□□□□□ -1.78
HMGB1P09429 LINC02305-201ENST00000554142 476 ntTSL 3 BASIC3.91□□□□□ -1.78
HMGB1P09429 AC015908.4-201ENST00000582334 575 ntTSL 4 BASIC3.91□□□□□ -1.78
HMGB1P09429 MIR3158-1-201ENST00000583596 81 ntBASIC3.91□□□□□ -1.78
HMGB1P09429 MIR4276-201ENST00000584832 70 ntBASIC3.91□□□□□ -1.78
HMGB1P09429 MAGI2-AS3-224ENST00000619135 205 ntTSL 5 BASIC3.91□□□□□ -1.78
HMGB1P09429 AC022079.1-201ENST00000621546 602 ntBASIC3.91□□□□□ -1.78
HMGB1P09429 AC138627.2-201ENST00000624202 601 ntBASIC3.91□□□□□ -1.78
HMGB1P09429 LINC02246-205ENST00000627623 417 ntTSL 5 BASIC3.91□□□□□ -1.78
HMGB1P09429 SUGT1-201ENST00000310528 14131 ntAPPRIS P3 TSL 1 (best) BASIC3.91□□□□□ -1.78
HMGB1P09429 RNU6-74P-201ENST00000384235 107 ntBASIC3.9□□□□□ -1.79
HMGB1P09429 RNU6-72P-201ENST00000384285 79 ntBASIC3.9□□□□□ -1.79
HMGB1P09429 MIR449B-201ENST00000384995 97 ntBASIC3.9□□□□□ -1.79
HMGB1P09429 AP003025.1-201ENST00000421650 149 ntTSL 1 (best) BASIC3.9□□□□□ -1.79
HMGB1P09429 AC245052.1-201ENST00000426213 410 ntTSL 3 BASIC3.9□□□□□ -1.79
HMGB1P09429 AL358934.1-201ENST00000432346 324 ntBASIC3.9□□□□□ -1.79
HMGB1P09429 AL360271.2-201ENST00000447710 161 ntBASIC3.9□□□□□ -1.79
HMGB1P09429 NDUFB1P2-201ENST00000449477 176 ntBASIC3.9□□□□□ -1.79
HMGB1P09429 AL162395.1-201ENST00000457882 422 ntBASIC3.9□□□□□ -1.79
HMGB1P09429 AC046136.1-201ENST00000459855 533 ntTSL 3 BASIC3.9□□□□□ -1.79
HMGB1P09429 AC080013.2-201ENST00000460866 323 ntBASIC3.9□□□□□ -1.79
HMGB1P09429 AC012081.1-201ENST00000462382 477 ntTSL 3 BASIC3.9□□□□□ -1.79
HMGB1P09429 KLF3P2-201ENST00000465138 268 ntBASIC3.9□□□□□ -1.79
HMGB1P09429 MED28P2-201ENST00000475771 317 ntBASIC3.9□□□□□ -1.79
HMGB1P09429 AC140059.1-201ENST00000489238 361 ntBASIC3.9□□□□□ -1.79
HMGB1P09429 SNORA67.7-201ENST00000516664 135 ntBASIC3.9□□□□□ -1.79
HMGB1P09429 AC007458.1-201ENST00000542812 373 ntBASIC3.9□□□□□ -1.79
HMGB1P09429 AC073657.2-201ENST00000605661 303 ntBASIC3.9□□□□□ -1.79
HMGB1P09429 AL157817.1-201ENST00000614264 790 ntBASIC3.9□□□□□ -1.79
HMGB1P09429 AC104971.4-201ENST00000622763 249 ntTSL 5 BASIC3.9□□□□□ -1.79
HMGB1P09429 TEX41-300ENST00000631048 69 ntTSL 5 BASIC3.9□□□□□ -1.79
HMGB1P09429 ATM-228ENST00000639240 498 ntTSL 5 BASIC3.9□□□□□ -1.79
HMGB1P09429 ATM-230ENST00000640388 578 ntTSL 5 BASIC3.9□□□□□ -1.79
HMGB1P09429 ZFYVE16-202ENST00000505560 6599 ntAPPRIS P1 TSL 1 (best) BASIC3.9□□□□□ -1.79
HMGB1P09429 ATP2C1-202ENST00000359644 3401 ntAPPRIS P3 TSL 1 (best) BASIC3.9□□□□□ -1.79
HMGB1P09429 RGS13-204ENST00000543215 1518 ntAPPRIS P1 TSL 1 (best) BASIC3.9□□□□□ -1.79
Retrieved 100 of 98,524 protein–RNA pairs in 160.2 ms