Protein–RNA interactions for Protein: O95639

CPSF4, Cleavage and polyadenylation specificity factor subunit 4, humanhuman

Known RBP Predictions only

Length 269 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF4O95639 ZNF736P11Y-201ENST00000442535 1213 ntBASIC1.63□□□□□ -2.15
CPSF4O95639 LINC00363-201ENST00000443228 210 ntTSL 5 BASIC1.63□□□□□ -2.15
CPSF4O95639 IFNA11P-201ENST00000446352 526 ntBASIC1.63□□□□□ -2.15
CPSF4O95639 SFTA1P-203ENST00000446372 693 ntTSL 1 (best) BASIC1.63□□□□□ -2.15
CPSF4O95639 CECR9-201ENST00000453421 199 ntBASIC1.63□□□□□ -2.15
CPSF4O95639 AC233279.1-201ENST00000455300 423 ntBASIC1.63□□□□□ -2.15
CPSF4O95639 AC092264.1-201ENST00000456002 713 ntTSL 5 BASIC1.63□□□□□ -2.15
CPSF4O95639 RPL26P9-201ENST00000457466 433 ntBASIC1.63□□□□□ -2.15
CPSF4O95639 RNU7-59P-201ENST00000459101 61 ntBASIC1.63□□□□□ -2.15
CPSF4O95639 AC092958.2-201ENST00000476987 492 ntTSL 3 BASIC1.63□□□□□ -2.15
CPSF4O95639 RPS29P21-201ENST00000496272 170 ntBASIC1.63□□□□□ -2.15
CPSF4O95639 C4orf33-204ENST00000502887 1126 ntTSL 1 (best) BASIC1.63□□□□□ -2.15
CPSF4O95639 AC034234.1-202ENST00000508696 339 ntTSL 3 BASIC1.63□□□□□ -2.15
CPSF4O95639 LTV1P1-201ENST00000510683 1237 ntBASIC1.63□□□□□ -2.15
CPSF4O95639 MTRNR2L5-201ENST00000512524 739 ntAPPRIS P1 BASIC1.63□□□□□ -2.15
CPSF4O95639 AC106895.1-201ENST00000515825 548 ntTSL 4 BASIC1.63□□□□□ -2.15
CPSF4O95639 AC021242.2-203ENST00000521842 687 ntTSL 3 BASIC1.63□□□□□ -2.15
CPSF4O95639 RANP3-201ENST00000530970 276 ntBASIC1.63□□□□□ -2.15
CPSF4O95639 AP004247.1-201ENST00000531556 1289 ntBASIC1.63□□□□□ -2.15
CPSF4O95639 AC093012.1-202ENST00000549403 582 ntBASIC1.63□□□□□ -2.15
CPSF4O95639 MRPL42-208ENST00000552217 920 ntAPPRIS P2 TSL 2 BASIC1.63□□□□□ -2.15
CPSF4O95639 AC104581.2-201ENST00000572227 430 ntBASIC1.63□□□□□ -2.15
CPSF4O95639 AC004805.2-201ENST00000605382 482 ntBASIC1.63□□□□□ -2.15
CPSF4O95639 AC068506.1-202ENST00000613388 545 ntTSL 3 BASIC1.63□□□□□ -2.15
CPSF4O95639 C4orf22-209ENST00000621014 228 ntTSL 3 BASIC1.63□□□□□ -2.15
CPSF4O95639 AL136313.1-201ENST00000624804 202 ntBASIC1.63□□□□□ -2.15
CPSF4O95639 PTP4A2-219ENST00000626355 606 ntTSL 5 BASIC1.63□□□□□ -2.15
CPSF4O95639 LINC01111-201ENST00000518732 1663 ntTSL 1 (best) BASIC1.63□□□□□ -2.15
CPSF4O95639 FSIP2-206ENST00000611759 3882 ntAPPRIS ALT2 TSL 5 BASIC1.63□□□□□ -2.15
CPSF4O95639 TRIQK-212ENST00000520686 1808 ntAPPRIS P1 TSL 1 (best) BASIC1.63□□□□□ -2.15
CPSF4O95639 AC092881.1-201ENST00000638218 2733 ntBASIC1.62□□□□□ -2.15
CPSF4O95639 HSPA8P4-201ENST00000511877 1920 ntBASIC1.62□□□□□ -2.15
CPSF4O95639 SNHG14-215ENST00000551631 4008 ntTSL 5 BASIC1.62□□□□□ -2.15
CPSF4O95639 PSG8-202ENST00000401467 1686 ntTSL 5 BASIC1.62□□□□□ -2.15
CPSF4O95639 AC004944.1-201ENST00000517807 3059 ntBASIC1.62□□□□□ -2.15
CPSF4O95639 Y_RNA.245-201ENST00000364493 95 ntBASIC1.62□□□□□ -2.15
CPSF4O95639 RNA5SP363-201ENST00000365072 115 ntBASIC1.62□□□□□ -2.15
CPSF4O95639 MIR583-201ENST00000384846 75 ntBASIC1.62□□□□□ -2.15
CPSF4O95639 AL359634.1-202ENST00000404721 284 ntBASIC1.62□□□□□ -2.15
CPSF4O95639 RNU4-26P-201ENST00000410270 107 ntBASIC1.62□□□□□ -2.15
CPSF4O95639 AL008987.1-201ENST00000415528 237 ntBASIC1.62□□□□□ -2.15
CPSF4O95639 AC026355.1-201ENST00000423466 587 ntTSL 5 BASIC1.62□□□□□ -2.15
CPSF4O95639 AL390774.2-201ENST00000423942 788 ntTSL 3 BASIC1.62□□□□□ -2.15
CPSF4O95639 AL157786.1-206ENST00000424422 551 ntTSL 3 BASIC1.62□□□□□ -2.15
CPSF4O95639 ELOCP14-201ENST00000428070 331 ntBASIC1.62□□□□□ -2.15
CPSF4O95639 MTND1P28-201ENST00000435623 950 ntBASIC1.62□□□□□ -2.15
CPSF4O95639 SNRPEP9-201ENST00000436794 238 ntBASIC1.62□□□□□ -2.15
CPSF4O95639 LARP1BP3-201ENST00000437229 869 ntBASIC1.62□□□□□ -2.15
CPSF4O95639 ELOCP7-201ENST00000439968 331 ntBASIC1.62□□□□□ -2.15
CPSF4O95639 AL356475.1-201ENST00000440321 341 ntTSL 5 BASIC1.62□□□□□ -2.15
CPSF4O95639 AC005094.1-201ENST00000440420 368 ntBASIC1.62□□□□□ -2.15
CPSF4O95639 AC018816.1-203ENST00000441894 338 ntTSL 3 BASIC1.62□□□□□ -2.15
CPSF4O95639 AL138830.2-202ENST00000446358 786 ntTSL 2 BASIC1.62□□□□□ -2.15
CPSF4O95639 LINC01474-202ENST00000449235 628 ntTSL 3 BASIC1.62□□□□□ -2.15
CPSF4O95639 HTR2A-AS1-202ENST00000452352 384 ntTSL 2 BASIC1.62□□□□□ -2.15
CPSF4O95639 Z98749.1-201ENST00000454123 541 ntTSL 5 BASIC1.62□□□□□ -2.15
CPSF4O95639 AL139109.1-201ENST00000455491 297 ntBASIC1.62□□□□□ -2.15
CPSF4O95639 AC013267.1-201ENST00000458227 267 ntBASIC1.62□□□□□ -2.15
CPSF4O95639 AC010789.1-201ENST00000458489 291 ntTSL 5 BASIC1.62□□□□□ -2.15
CPSF4O95639 AC107626.1-201ENST00000471084 183 ntBASIC1.62□□□□□ -2.15
CPSF4O95639 RPL23AP63-201ENST00000498752 471 ntBASIC1.62□□□□□ -2.15
CPSF4O95639 AC105252.1-201ENST00000503089 286 ntBASIC1.62□□□□□ -2.15
CPSF4O95639 CSN1S1-202ENST00000505782 871 ntAPPRIS ALT2 TSL 5 BASIC1.62□□□□□ -2.15
CPSF4O95639 RNA5SP182-201ENST00000516064 82 ntBASIC1.62□□□□□ -2.15
CPSF4O95639 RNU6-311P-201ENST00000516224 102 ntBASIC1.62□□□□□ -2.15
CPSF4O95639 RNU5A-4P-201ENST00000516588 111 ntBASIC1.62□□□□□ -2.15
CPSF4O95639 MIR514B-201ENST00000516774 80 ntBASIC1.62□□□□□ -2.15
CPSF4O95639 RNU6-64P-201ENST00000517119 105 ntBASIC1.62□□□□□ -2.15
CPSF4O95639 OR5AQ1P-201ENST00000527596 927 ntBASIC1.62□□□□□ -2.15
CPSF4O95639 AC068587.4-201ENST00000533893 186 ntBASIC1.62□□□□□ -2.15
CPSF4O95639 AC096558.2-201ENST00000546678 506 ntTSL 3 BASIC1.62□□□□□ -2.15
CPSF4O95639 AC127894.1-201ENST00000548266 851 ntTSL 3 BASIC1.62□□□□□ -2.15
CPSF4O95639 G2E3-AS1-202ENST00000550118 609 ntTSL 5 BASIC1.62□□□□□ -2.15
CPSF4O95639 AL359212.1-201ENST00000556608 614 ntBASIC1.62□□□□□ -2.15
CPSF4O95639 AC026771.1-201ENST00000564672 415 ntTSL 2 BASIC1.62□□□□□ -2.15
CPSF4O95639 MIR3616-201ENST00000584070 92 ntBASIC1.62□□□□□ -2.15
CPSF4O95639 MIR4293-201ENST00000584305 78 ntBASIC1.62□□□□□ -2.15
CPSF4O95639 LINC01897-203ENST00000591503 369 ntTSL 2 BASIC1.62□□□□□ -2.15
CPSF4O95639 ZNF667-AS1-209ENST00000601875 495 ntTSL 3 BASIC1.62□□□□□ -2.15
CPSF4O95639 LINC02112-205ENST00000606744 236 ntTSL 1 (best) BASIC1.62□□□□□ -2.15
CPSF4O95639 AC092953.2-201ENST00000608000 699 ntBASIC1.62□□□□□ -2.15
CPSF4O95639 AL607023.1-201ENST00000620045 248 ntBASIC1.62□□□□□ -2.15
CPSF4O95639 AC068057.2-201ENST00000624047 895 ntBASIC1.62□□□□□ -2.15
CPSF4O95639 MIR7515-201ENST00000637837 67 ntBASIC1.62□□□□□ -2.15
CPSF4O95639 FKTN-204ENST00000448551 1700 ntTSL 2 BASIC1.62□□□□□ -2.15
CPSF4O95639 CCDC66-201ENST00000326595 3027 ntAPPRIS P3 TSL 1 (best) BASIC1.62□□□□□ -2.15
CPSF4O95639 NF1-214ENST00000490416 1329 ntTSL 3 BASIC1.62□□□□□ -2.15
CPSF4O95639 CAPS2-203ENST00000393284 3430 ntAPPRIS P1 TSL 1 (best) BASIC1.62□□□□□ -2.15
CPSF4O95639 MBNL3-212ENST00000538204 11294 ntTSL 1 (best) BASIC1.61□□□□□ -2.15
CPSF4O95639 MTND4P16-201ENST00000466108 1367 ntBASIC1.61□□□□□ -2.15
CPSF4O95639 PAPPA-AS1-201ENST00000445861 2450 ntBASIC1.61□□□□□ -2.15
CPSF4O95639 RNU6-1167P-201ENST00000363227 94 ntBASIC1.61□□□□□ -2.15
CPSF4O95639 AP003170.3-201ENST00000399123 158 ntTSL 5 BASIC1.61□□□□□ -2.15
CPSF4O95639 AL365356.1-201ENST00000411512 736 ntTSL 3 BASIC1.61□□□□□ -2.15
CPSF4O95639 VPS26BP1-201ENST00000417155 755 ntBASIC1.61□□□□□ -2.15
CPSF4O95639 BPY2DP-201ENST00000422208 265 ntBASIC1.61□□□□□ -2.15
CPSF4O95639 AC013410.2-201ENST00000422627 201 ntBASIC1.61□□□□□ -2.15
CPSF4O95639 SKA2P1-201ENST00000425592 390 ntBASIC1.61□□□□□ -2.15
CPSF4O95639 AL445488.1-202ENST00000430623 545 ntTSL 3 BASIC1.61□□□□□ -2.15
CPSF4O95639 AC007003.1-202ENST00000439318 349 ntTSL 5 BASIC1.61□□□□□ -2.15
Retrieved 100 of 98,524 protein–RNA pairs in 100.4 ms