Protein–RNA interactions for Protein: Q9UK41

VPS28, Vacuolar protein sorting-associated protein 28 homolog, humanhuman

Predictions only

Length 221 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28Q9UK41 AP000936.2-201ENST00000447151 681 ntBASIC3.09□□□□□ -1.91
VPS28Q9UK41 AL078587.1-201ENST00000448580 542 ntTSL 5 BASIC3.09□□□□□ -1.91
VPS28Q9UK41 AC003071.1-201ENST00000451219 789 ntBASIC3.09□□□□□ -1.91
VPS28Q9UK41 TEX41-209ENST00000451478 452 ntTSL 2 BASIC3.09□□□□□ -1.91
VPS28Q9UK41 RPS26P21-201ENST00000475397 348 ntBASIC3.09□□□□□ -1.91
VPS28Q9UK41 AC023794.1-201ENST00000504210 403 ntTSL 2 BASIC3.09□□□□□ -1.91
VPS28Q9UK41 LINC02377-202ENST00000505436 523 ntTSL 5 BASIC3.09□□□□□ -1.91
VPS28Q9UK41 LINC01333-201ENST00000508083 724 ntTSL 1 (best) BASIC3.09□□□□□ -1.91
VPS28Q9UK41 AC079349.1-201ENST00000509096 589 ntTSL 2 BASIC3.09□□□□□ -1.91
VPS28Q9UK41 AC108067.1-201ENST00000514304 215 ntTSL 5 BASIC3.09□□□□□ -1.91
VPS28Q9UK41 RNA5SP385-201ENST00000515947 110 ntBASIC3.09□□□□□ -1.91
VPS28Q9UK41 RNU6-572P-201ENST00000516724 80 ntBASIC3.09□□□□□ -1.91
VPS28Q9UK41 SNORD19.2-201ENST00000516978 73 ntBASIC3.09□□□□□ -1.91
VPS28Q9UK41 RNU6-1183P-201ENST00000517054 60 ntBASIC3.09□□□□□ -1.91
VPS28Q9UK41 AC025755.1-201ENST00000521306 278 ntBASIC3.09□□□□□ -1.91
VPS28Q9UK41 LINCR-0001-203ENST00000524047 545 ntTSL 4 BASIC3.09□□□□□ -1.91
VPS28Q9UK41 AC078889.1-201ENST00000536412 523 ntTSL 2 BASIC3.09□□□□□ -1.91
VPS28Q9UK41 AC021739.1-201ENST00000559631 174 ntBASIC3.09□□□□□ -1.91
VPS28Q9UK41 AL451007.1-201ENST00000595491 289 ntBASIC3.09□□□□□ -1.91
VPS28Q9UK41 AL137843.1-201ENST00000605078 385 ntBASIC3.09□□□□□ -1.91
VPS28Q9UK41 AC019159.1-201ENST00000605094 187 ntBASIC3.09□□□□□ -1.91
VPS28Q9UK41 CU459211.1-201ENST00000635667 749 ntBASIC3.09□□□□□ -1.91
VPS28Q9UK41 CHD1-201ENST00000284049 6457 ntAPPRIS P1 TSL 1 (best) BASIC3.09□□□□□ -1.92
VPS28Q9UK41 AC026241.1-201ENST00000517873 2142 ntBASIC3.08□□□□□ -1.92
VPS28Q9UK41 IL23R-205ENST00000637002 2208 ntTSL 1 (best) BASIC3.08□□□□□ -1.92
VPS28Q9UK41 ACTR6-212ENST00000552376 1659 ntTSL 5 BASIC3.08□□□□□ -1.92
VPS28Q9UK41 LUZP4-201ENST00000371920 1701 ntAPPRIS P2 TSL 1 (best) BASIC3.08□□□□□ -1.92
VPS28Q9UK41 MIR133A1HG-202ENST00000581072 4226 ntTSL 1 (best) BASIC3.08□□□□□ -1.92
VPS28Q9UK41 AC073325.2-201ENST00000339545 159 ntBASIC3.08□□□□□ -1.92
VPS28Q9UK41 RNU6-179P-201ENST00000363350 107 ntBASIC3.08□□□□□ -1.92
VPS28Q9UK41 RN7SKP226-201ENST00000364912 300 ntBASIC3.08□□□□□ -1.92
VPS28Q9UK41 SNORD116-9-201ENST00000384000 95 ntBASIC3.08□□□□□ -1.92
VPS28Q9UK41 SNORD116-3-201ENST00000384287 95 ntBASIC3.08□□□□□ -1.92
VPS28Q9UK41 SNORD116-7-201ENST00000384404 95 ntBASIC3.08□□□□□ -1.92
VPS28Q9UK41 SNORD116-5-201ENST00000384462 95 ntBASIC3.08□□□□□ -1.92
VPS28Q9UK41 BCL2L15-203ENST00000393320 276 ntTSL 1 (best) BASIC3.08□□□□□ -1.92
VPS28Q9UK41 UBA52P6-201ENST00000399822 382 ntBASIC3.08□□□□□ -1.92
VPS28Q9UK41 AL512633.1-201ENST00000399931 655 ntBASIC3.08□□□□□ -1.92
VPS28Q9UK41 AC104332.2-201ENST00000429959 156 ntBASIC3.08□□□□□ -1.92
VPS28Q9UK41 RPS20P5-201ENST00000434808 360 ntBASIC3.08□□□□□ -1.92
VPS28Q9UK41 NFIA-AS1-201ENST00000442027 384 ntTSL 2 BASIC3.08□□□□□ -1.92
VPS28Q9UK41 OSTCP8-201ENST00000445117 448 ntBASIC3.08□□□□□ -1.92
VPS28Q9UK41 DNM3-IT1-201ENST00000450800 396 ntTSL 3 BASIC3.08□□□□□ -1.92
VPS28Q9UK41 AL133481.3-201ENST00000456546 333 ntTSL 3 BASIC3.08□□□□□ -1.92
VPS28Q9UK41 MIR1302-2HG-201ENST00000469289 535 ntTSL 5 BASIC3.08□□□□□ -1.92
VPS28Q9UK41 TRBV1-201ENST00000476502 284 ntBASIC3.08□□□□□ -1.92
VPS28Q9UK41 AC126389.1-201ENST00000477436 290 ntBASIC3.08□□□□□ -1.92
VPS28Q9UK41 RN7SL20P-201ENST00000488827 297 ntBASIC3.08□□□□□ -1.92
VPS28Q9UK41 AC116562.3-201ENST00000506136 177 ntBASIC3.08□□□□□ -1.92
VPS28Q9UK41 AC117460.1-201ENST00000508964 467 ntTSL 3 BASIC3.08□□□□□ -1.92
VPS28Q9UK41 LINC02494-201ENST00000509824 427 ntTSL 3 BASIC3.08□□□□□ -1.92
VPS28Q9UK41 AC117532.1-201ENST00000514638 323 ntBASIC3.08□□□□□ -1.92
VPS28Q9UK41 AC110296.1-201ENST00000515680 341 ntTSL 3 BASIC3.08□□□□□ -1.92
VPS28Q9UK41 RNU6-123P-201ENST00000516163 102 ntBASIC3.08□□□□□ -1.92
VPS28Q9UK41 SNORA31.19-201ENST00000517079 126 ntBASIC3.08□□□□□ -1.92
VPS28Q9UK41 SMIM18-201ENST00000517349 905 ntAPPRIS P1 TSL 2 BASIC3.08□□□□□ -1.92
VPS28Q9UK41 SKP1-203ENST00000517625 876 ntAPPRIS P4 TSL 3 BASIC3.08□□□□□ -1.92
VPS28Q9UK41 AP003730.2-202ENST00000527281 774 ntTSL 3 BASIC3.08□□□□□ -1.92
VPS28Q9UK41 AC068587.5-201ENST00000528506 175 ntBASIC3.08□□□□□ -1.92
VPS28Q9UK41 ZNF84-205ENST00000535439 647 ntTSL 5 BASIC3.08□□□□□ -1.92
VPS28Q9UK41 AC092747.1-202ENST00000540595 380 ntTSL 5 BASIC3.08□□□□□ -1.92
VPS28Q9UK41 AC006199.1-201ENST00000548728 219 ntBASIC3.08□□□□□ -1.92
VPS28Q9UK41 AC007151.1-201ENST00000572774 483 ntBASIC3.08□□□□□ -1.92
VPS28Q9UK41 AC016866.2-201ENST00000585251 502 ntTSL 2 BASIC3.08□□□□□ -1.92
VPS28Q9UK41 AC011477.3-201ENST00000585571 403 ntTSL 5 BASIC3.08□□□□□ -1.92
VPS28Q9UK41 AC098848.2-201ENST00000588023 330 ntBASIC3.08□□□□□ -1.92
VPS28Q9UK41 AL121992.2-201ENST00000606262 256 ntBASIC3.08□□□□□ -1.92
VPS28Q9UK41 AC135507.1-201ENST00000607214 561 ntBASIC3.08□□□□□ -1.92
VPS28Q9UK41 MIR663AHG-231ENST00000609044 590 ntTSL 5 BASIC3.08□□□□□ -1.92
VPS28Q9UK41 AC135507.2-201ENST00000612443 309 ntBASIC3.08□□□□□ -1.92
VPS28Q9UK41 AC072046.2-201ENST00000618366 268 ntBASIC3.08□□□□□ -1.92
VPS28Q9UK41 RTKN2-202ENST00000373789 6641 ntAPPRIS P1 TSL 1 (best) BASIC3.07□□□□□ -1.92
VPS28Q9UK41 GABRG2-221ENST00000639683 3600 ntTSL 5 BASIC3.07□□□□□ -1.92
VPS28Q9UK41 AK9-203ENST00000368948 2478 ntTSL 5 BASIC3.07□□□□□ -1.92
VPS28Q9UK41 DEFB114-201ENST00000322066 253 ntAPPRIS P1 TSL 1 (best) BASIC3.07□□□□□ -1.92
VPS28Q9UK41 SNORD116-2-201ENST00000384274 95 ntBASIC3.07□□□□□ -1.92
VPS28Q9UK41 SNORD116-6-201ENST00000384711 96 ntBASIC3.07□□□□□ -1.92
VPS28Q9UK41 NDUFB4P4-201ENST00000404822 243 ntBASIC3.07□□□□□ -1.92
VPS28Q9UK41 RNA5SP274-201ENST00000410484 108 ntBASIC3.07□□□□□ -1.92
VPS28Q9UK41 RNA5SP344-201ENST00000411081 104 ntBASIC3.07□□□□□ -1.92
VPS28Q9UK41 LINC00301-202ENST00000412599 772 ntTSL 1 (best) BASIC3.07□□□□□ -1.92
VPS28Q9UK41 USP9YP6-201ENST00000413550 854 ntBASIC3.07□□□□□ -1.92
VPS28Q9UK41 BX295541.1-201ENST00000417774 250 ntBASIC3.07□□□□□ -1.92
VPS28Q9UK41 AC000123.1-201ENST00000418215 516 ntTSL 5 BASIC3.07□□□□□ -1.92
VPS28Q9UK41 AC093151.1-201ENST00000427711 313 ntBASIC3.07□□□□□ -1.92
VPS28Q9UK41 AC007285.2-201ENST00000433088 518 ntTSL 3 BASIC3.07□□□□□ -1.92
VPS28Q9UK41 AF274573.2-201ENST00000437772 520 ntTSL 5 BASIC3.07□□□□□ -1.92
VPS28Q9UK41 DPPA3P1-201ENST00000448050 469 ntBASIC3.07□□□□□ -1.92
VPS28Q9UK41 OARD1-209ENST00000471367 401 ntTSL 2 BASIC3.07□□□□□ -1.92
VPS28Q9UK41 AC117440.1-201ENST00000474107 571 ntBASIC3.07□□□□□ -1.92
VPS28Q9UK41 AC011825.1-201ENST00000484967 388 ntBASIC3.07□□□□□ -1.92
VPS28Q9UK41 LAMTOR3P2-201ENST00000504479 232 ntBASIC3.07□□□□□ -1.92
VPS28Q9UK41 AC110767.1-201ENST00000508374 239 ntTSL 3 BASIC3.07□□□□□ -1.92
VPS28Q9UK41 AC025244.2-201ENST00000509215 422 ntTSL 3 BASIC3.07□□□□□ -1.92
VPS28Q9UK41 MEF2C-AS1-208ENST00000512585 741 ntTSL 5 BASIC3.07□□□□□ -1.92
VPS28Q9UK41 MTCO3P28-201ENST00000513351 515 ntBASIC3.07□□□□□ -1.92
VPS28Q9UK41 AP001646.1-201ENST00000527936 915 ntBASIC3.07□□□□□ -1.92
VPS28Q9UK41 ZDHHC20P3-201ENST00000531576 336 ntBASIC3.07□□□□□ -1.92
VPS28Q9UK41 AC007368.1-201ENST00000536422 974 ntTSL 5 BASIC3.07□□□□□ -1.92
VPS28Q9UK41 AC008115.2-201ENST00000539988 241 ntTSL 3 BASIC3.07□□□□□ -1.92
Retrieved 100 of 98,524 protein–RNA pairs in 94.2 ms