Protein–RNA interactions for Protein: Q9H4Z3

PCIF1, Phosphorylated CTD-interacting factor 1, humanhuman

Predictions only

Length 704 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCIF1Q9H4Z3 AC010967.2-201ENST00000418451 333 ntTSL 2 BASIC4.08□□□□□ -1.76
PCIF1Q9H4Z3 AC007919.1-201ENST00000429380 217 ntBASIC4.08□□□□□ -1.76
PCIF1Q9H4Z3 AL356867.1-201ENST00000429623 299 ntBASIC4.08□□□□□ -1.76
PCIF1Q9H4Z3 AL445584.1-201ENST00000431451 330 ntBASIC4.08□□□□□ -1.76
PCIF1Q9H4Z3 RPL7P28-201ENST00000437739 740 ntBASIC4.08□□□□□ -1.76
PCIF1Q9H4Z3 AF274573.2-201ENST00000437772 520 ntTSL 5 BASIC4.08□□□□□ -1.76
PCIF1Q9H4Z3 AL359672.1-201ENST00000442302 409 ntBASIC4.08□□□□□ -1.76
PCIF1Q9H4Z3 LAMTOR5P1-201ENST00000444290 270 ntBASIC4.08□□□□□ -1.76
PCIF1Q9H4Z3 AC098484.1-201ENST00000447572 484 ntTSL 3 BASIC4.08□□□□□ -1.76
PCIF1Q9H4Z3 RPL31P13-201ENST00000484151 370 ntBASIC4.08□□□□□ -1.76
PCIF1Q9H4Z3 USP8P1-201ENST00000494673 3183 ntBASIC4.08□□□□□ -1.76
PCIF1Q9H4Z3 AC069360.1-201ENST00000503469 431 ntTSL 2 BASIC4.08□□□□□ -1.76
PCIF1Q9H4Z3 AC079140.5-201ENST00000507882 310 ntBASIC4.08□□□□□ -1.76
PCIF1Q9H4Z3 AC005921.1-201ENST00000510589 286 ntBASIC4.08□□□□□ -1.76
PCIF1Q9H4Z3 AC093534.2-201ENST00000511418 420 ntTSL 3 BASIC4.08□□□□□ -1.76
PCIF1Q9H4Z3 AC106744.2-202ENST00000515123 448 ntTSL 3 BASIC4.08□□□□□ -1.76
PCIF1Q9H4Z3 RNU6-143P-201ENST00000516942 93 ntBASIC4.08□□□□□ -1.76
PCIF1Q9H4Z3 AC103957.1-201ENST00000517681 503 ntTSL 3 BASIC4.08□□□□□ -1.76
PCIF1Q9H4Z3 AC087854.1-201ENST00000519706 414 ntBASIC4.08□□□□□ -1.76
PCIF1Q9H4Z3 MS4A4E-206ENST00000528394 555 ntTSL 1 (best) BASIC4.08□□□□□ -1.76
PCIF1Q9H4Z3 AF111169.4-202ENST00000553507 262 ntTSL 3 BASIC4.08□□□□□ -1.76
PCIF1Q9H4Z3 AC090985.1-201ENST00000554440 480 ntTSL 2 BASIC4.08□□□□□ -1.76
PCIF1Q9H4Z3 IGKV2OR2-8-201ENST00000558710 300 ntBASIC4.08□□□□□ -1.76
PCIF1Q9H4Z3 MIR1273C-201ENST00000578669 77 ntBASIC4.08□□□□□ -1.76
PCIF1Q9H4Z3 AC022035.1-201ENST00000579923 302 ntTSL 2 BASIC4.08□□□□□ -1.76
PCIF1Q9H4Z3 AC106900.2-201ENST00000604994 317 ntBASIC4.08□□□□□ -1.76
PCIF1Q9H4Z3 RNU6ATAC35P-201ENST00000609276 444 ntBASIC4.08□□□□□ -1.76
PCIF1Q9H4Z3 AC097478.4-201ENST00000615968 522 ntTSL 5 BASIC4.08□□□□□ -1.76
PCIF1Q9H4Z3 ADGRL2-207ENST00000370723 5254 ntTSL 5 BASIC4.08□□□□□ -1.76
PCIF1Q9H4Z3 NAIP-205ENST00000508426 4153 ntTSL 1 (best) BASIC4.08□□□□□ -1.76
PCIF1Q9H4Z3 AC116096.1-201ENST00000566804 2314 ntBASIC4.07□□□□□ -1.76
PCIF1Q9H4Z3 RTN4-208ENST00000404909 4102 ntTSL 1 (best) BASIC4.07□□□□□ -1.76
PCIF1Q9H4Z3 TRIQK-214ENST00000521988 3672 ntAPPRIS P1 TSL 1 (best) BASIC4.07□□□□□ -1.76
PCIF1Q9H4Z3 PCDH15-208ENST00000395432 6901 ntTSL 5 BASIC4.07□□□□□ -1.76
PCIF1Q9H4Z3 RNU6-474P-201ENST00000384243 107 ntBASIC4.07□□□□□ -1.76
PCIF1Q9H4Z3 RNU6-1179P-201ENST00000384667 107 ntBASIC4.07□□□□□ -1.76
PCIF1Q9H4Z3 RNA5SP424-201ENST00000390988 115 ntBASIC4.07□□□□□ -1.76
PCIF1Q9H4Z3 AC118345.1-201ENST00000411785 366 ntTSL 3 BASIC4.07□□□□□ -1.76
PCIF1Q9H4Z3 CYCSP33-201ENST00000414485 327 ntBASIC4.07□□□□□ -1.76
PCIF1Q9H4Z3 ELF3-AS1-201ENST00000415582 500 ntTSL 2 BASIC4.07□□□□□ -1.76
PCIF1Q9H4Z3 AL353621.1-201ENST00000418219 243 ntBASIC4.07□□□□□ -1.76
PCIF1Q9H4Z3 RPL17P36-201ENST00000420302 549 ntBASIC4.07□□□□□ -1.76
PCIF1Q9H4Z3 LINC01005-202ENST00000451440 531 ntTSL 4 BASIC4.07□□□□□ -1.76
PCIF1Q9H4Z3 AL645939.1-201ENST00000453429 797 ntBASIC4.07□□□□□ -1.76
PCIF1Q9H4Z3 FGF7P3-201ENST00000454645 303 ntBASIC4.07□□□□□ -1.76
PCIF1Q9H4Z3 AL109763.1-201ENST00000455391 461 ntTSL 2 BASIC4.07□□□□□ -1.76
PCIF1Q9H4Z3 AL133162.1-201ENST00000463228 453 ntBASIC4.07□□□□□ -1.76
PCIF1Q9H4Z3 HMGN1P10-201ENST00000474557 553 ntBASIC4.07□□□□□ -1.76
PCIF1Q9H4Z3 AC092666.1-202ENST00000493400 442 ntTSL 2 BASIC4.07□□□□□ -1.76
PCIF1Q9H4Z3 AC008716.1-201ENST00000511084 513 ntBASIC4.07□□□□□ -1.76
PCIF1Q9H4Z3 RNU1-86P-201ENST00000516108 154 ntBASIC4.07□□□□□ -1.76
PCIF1Q9H4Z3 RNU1-107P-201ENST00000516617 154 ntBASIC4.07□□□□□ -1.76
PCIF1Q9H4Z3 RNU6-1213P-201ENST00000517075 94 ntBASIC4.07□□□□□ -1.76
PCIF1Q9H4Z3 SOX5-AS1-201ENST00000539583 573 ntTSL 4 BASIC4.07□□□□□ -1.76
PCIF1Q9H4Z3 AF099810.1-201ENST00000554219 525 ntTSL 3 BASIC4.07□□□□□ -1.76
PCIF1Q9H4Z3 AC243829.5-201ENST00000578447 247 ntTSL 5 BASIC4.07□□□□□ -1.76
PCIF1Q9H4Z3 MIR3171-201ENST00000584270 74 ntBASIC4.07□□□□□ -1.76
PCIF1Q9H4Z3 AL080274.1-201ENST00000605565 220 ntBASIC4.07□□□□□ -1.76
PCIF1Q9H4Z3 PART1_1.1-201ENST00000611761 217 ntBASIC4.07□□□□□ -1.76
PCIF1Q9H4Z3 ATG5-207ENST00000613993 733 ntTSL 1 (best) BASIC4.07□□□□□ -1.76
PCIF1Q9H4Z3 AC098657.3-201ENST00000620434 263 ntBASIC4.07□□□□□ -1.76
PCIF1Q9H4Z3 AC103858.2-201ENST00000621471 543 ntBASIC4.07□□□□□ -1.76
PCIF1Q9H4Z3 LINC00976-201ENST00000625513 783 ntTSL 3 BASIC4.07□□□□□ -1.76
PCIF1Q9H4Z3 CUL4B-202ENST00000371322 4902 ntAPPRIS P1 TSL 1 (best) BASIC4.07□□□□□ -1.76
PCIF1Q9H4Z3 KCNU1-201ENST00000399881 3695 ntAPPRIS P1 TSL 2 BASIC4.07□□□□□ -1.76
PCIF1Q9H4Z3 FMNL2-202ENST00000475377 3648 ntTSL 5 BASIC4.07□□□□□ -1.76
PCIF1Q9H4Z3 PPIP5K2-201ENST00000321521 15407 ntAPPRIS P3 TSL 5 BASIC4.07□□□□□ -1.76
PCIF1Q9H4Z3 PLSCR5-201ENST00000443512 1969 ntAPPRIS P1 TSL 1 (best) BASIC4.07□□□□□ -1.76
PCIF1Q9H4Z3 SLITRK4-203ENST00000596188 8545 ntAPPRIS P1 TSL 1 (best) BASIC4.07□□□□□ -1.76
PCIF1Q9H4Z3 IFI16-208ENST00000448393 2245 ntAPPRIS ALT2 TSL 5 BASIC4.06□□□□□ -1.76
PCIF1Q9H4Z3 IQCH-201ENST00000335894 4208 ntAPPRIS P1 TSL 1 (best) BASIC4.06□□□□□ -1.76
PCIF1Q9H4Z3 TRIM36-201ENST00000282369 4050 ntAPPRIS P1 TSL 1 (best) BASIC4.06□□□□□ -1.76
PCIF1Q9H4Z3 SNORD3E-201ENST00000362899 217 ntBASIC4.06□□□□□ -1.76
PCIF1Q9H4Z3 Y_RNA.162-201ENST00000363683 102 ntBASIC4.06□□□□□ -1.76
PCIF1Q9H4Z3 Y_RNA.245-201ENST00000364493 95 ntBASIC4.06□□□□□ -1.76
PCIF1Q9H4Z3 RNU6-692P-201ENST00000384496 107 ntBASIC4.06□□□□□ -1.76
PCIF1Q9H4Z3 RNU6-95P-201ENST00000384697 107 ntBASIC4.06□□□□□ -1.76
PCIF1Q9H4Z3 MIR301A-201ENST00000385261 86 ntBASIC4.06□□□□□ -1.76
PCIF1Q9H4Z3 NT5C3A-205ENST00000409467 1032 ntAPPRIS ALT1 TSL 5 BASIC4.06□□□□□ -1.76
PCIF1Q9H4Z3 SNORA57.3-201ENST00000411095 141 ntBASIC4.06□□□□□ -1.76
PCIF1Q9H4Z3 IGKV1OR9-2-201ENST00000431378 277 ntBASIC4.06□□□□□ -1.76
PCIF1Q9H4Z3 NDUFB1P1-201ENST00000435191 180 ntBASIC4.06□□□□□ -1.76
PCIF1Q9H4Z3 AL441989.1-201ENST00000454204 382 ntTSL 3 BASIC4.06□□□□□ -1.76
PCIF1Q9H4Z3 MTCO3P10-201ENST00000455912 772 ntBASIC4.06□□□□□ -1.76
PCIF1Q9H4Z3 RNU7-138P-201ENST00000459479 64 ntBASIC4.06□□□□□ -1.76
PCIF1Q9H4Z3 KC877373.1-201ENST00000479066 408 ntBASIC4.06□□□□□ -1.76
PCIF1Q9H4Z3 AC096576.1-201ENST00000489014 359 ntBASIC4.06□□□□□ -1.76
PCIF1Q9H4Z3 AL160314.1-201ENST00000490836 438 ntBASIC4.06□□□□□ -1.76
PCIF1Q9H4Z3 RNU6-1016P-201ENST00000516689 94 ntBASIC4.06□□□□□ -1.76
PCIF1Q9H4Z3 RNA5SP143-201ENST00000516936 115 ntBASIC4.06□□□□□ -1.76
PCIF1Q9H4Z3 AC090772.1-201ENST00000583782 507 ntTSL 5 BASIC4.06□□□□□ -1.76
PCIF1Q9H4Z3 RNU1-30P-201ENST00000606575 163 ntBASIC4.06□□□□□ -1.76
PCIF1Q9H4Z3 MIR486-1-201ENST00000612171 68 ntBASIC4.06□□□□□ -1.76
PCIF1Q9H4Z3 MIR6128-201ENST00000615528 109 ntBASIC4.06□□□□□ -1.76
PCIF1Q9H4Z3 AC010378.1-201ENST00000619270 362 ntBASIC4.06□□□□□ -1.76
PCIF1Q9H4Z3 SNORD39.4-201ENST00000620099 78 ntBASIC4.06□□□□□ -1.76
PCIF1Q9H4Z3 MTTP-201ENST00000265517 4037 ntAPPRIS P1 TSL 1 (best) BASIC4.06□□□□□ -1.76
PCIF1Q9H4Z3 AL033397.1-201ENST00000502390 3653 ntTSL 2 BASIC4.05□□□□□ -1.76
PCIF1Q9H4Z3 ADGRL2-210ENST00000370728 6302 ntAPPRIS ALT2 TSL 5 BASIC4.05□□□□□ -1.76
PCIF1Q9H4Z3 FKTN-201ENST00000223528 7364 ntAPPRIS P1 TSL 1 (best) BASIC4.05□□□□□ -1.76
Retrieved 100 of 98,524 protein–RNA pairs in 106.5 ms