Protein–RNA interactions for Protein: Q99626

CDX2, Homeobox protein CDX-2, humanhuman

Predicted RBP Predictions only

Length 313 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDX2Q99626 RNU6-928P-201ENST00000516876 104 ntBASIC2.09□□□□□ -2.07
CDX2Q99626 NRON-201ENST00000517270 370 ntBASIC2.09□□□□□ -2.07
CDX2Q99626 AC026407.1-201ENST00000518369 204 ntBASIC2.09□□□□□ -2.07
CDX2Q99626 AC090739.1-201ENST00000522190 708 ntTSL 3 BASIC2.09□□□□□ -2.07
CDX2Q99626 AC068993.2-201ENST00000546563 395 ntTSL 5 BASIC2.09□□□□□ -2.07
CDX2Q99626 MRPL42-204ENST00000548545 692 ntAPPRIS ALT1 TSL 2 BASIC2.09□□□□□ -2.07
CDX2Q99626 PPFIA2-AS1-205ENST00000550938 790 ntTSL 3 BASIC2.09□□□□□ -2.07
CDX2Q99626 AC009712.1-201ENST00000564938 316 ntBASIC2.09□□□□□ -2.07
CDX2Q99626 MTCO2P2-201ENST00000591258 225 ntBASIC2.09□□□□□ -2.07
CDX2Q99626 LINC00907-210ENST00000593316 847 ntTSL 3 BASIC2.09□□□□□ -2.07
CDX2Q99626 AC090186.1-201ENST00000605991 572 ntBASIC2.09□□□□□ -2.07
CDX2Q99626 AC106052.1-201ENST00000608029 497 ntBASIC2.09□□□□□ -2.07
CDX2Q99626 AC013476.2-201ENST00000614456 459 ntBASIC2.09□□□□□ -2.07
CDX2Q99626 AL161629.2-201ENST00000615347 275 ntBASIC2.09□□□□□ -2.07
CDX2Q99626 AC084768.2-201ENST00000622736 221 ntBASIC2.09□□□□□ -2.07
CDX2Q99626 AC244517.12-201ENST00000623581 663 ntBASIC2.09□□□□□ -2.07
CDX2Q99626 AC215522.3-201ENST00000635602 354 ntTSL 5 BASIC2.09□□□□□ -2.07
CDX2Q99626 Clostridiales-1.2-201ENST00000636724 160 ntBASIC2.09□□□□□ -2.07
CDX2Q99626 CDK1-202ENST00000373809 1613 ntTSL 1 (best) BASIC2.09□□□□□ -2.08
CDX2Q99626 AC021237.1-201ENST00000504175 1643 ntTSL 2 BASIC2.09□□□□□ -2.08
CDX2Q99626 MIR6073-201ENST00000352083 89 ntBASIC2.08□□□□□ -2.08
CDX2Q99626 RNU4-68P-201ENST00000364314 141 ntBASIC2.08□□□□□ -2.08
CDX2Q99626 RNU6-1078P-201ENST00000364522 103 ntBASIC2.08□□□□□ -2.08
CDX2Q99626 RNU6-744P-201ENST00000365557 107 ntBASIC2.08□□□□□ -2.08
CDX2Q99626 Y_RNA.374-201ENST00000365606 101 ntBASIC2.08□□□□□ -2.08
CDX2Q99626 RNU6-637P-201ENST00000384050 107 ntBASIC2.08□□□□□ -2.08
CDX2Q99626 RNU6-217P-201ENST00000384164 104 ntBASIC2.08□□□□□ -2.08
CDX2Q99626 RNU6-1316P-201ENST00000384242 108 ntBASIC2.08□□□□□ -2.08
CDX2Q99626 Y_RNA.465-201ENST00000384293 102 ntBASIC2.08□□□□□ -2.08
CDX2Q99626 MIR325-201ENST00000385260 98 ntBASIC2.08□□□□□ -2.08
CDX2Q99626 MTND1P21-201ENST00000412991 285 ntBASIC2.08□□□□□ -2.08
CDX2Q99626 AC003092.1-201ENST00000415536 639 ntTSL 3 BASIC2.08□□□□□ -2.08
CDX2Q99626 AC005005.2-201ENST00000420779 380 ntBASIC2.08□□□□□ -2.08
CDX2Q99626 AL391069.1-201ENST00000422153 358 ntTSL 3 BASIC2.08□□□□□ -2.08
CDX2Q99626 AC093151.3-203ENST00000422305 514 ntTSL 3 BASIC2.08□□□□□ -2.08
CDX2Q99626 AC027124.2-201ENST00000428249 105 ntBASIC2.08□□□□□ -2.08
CDX2Q99626 AL356277.3-201ENST00000432484 618 ntTSL 3 BASIC2.08□□□□□ -2.08
CDX2Q99626 RPS15AP7-201ENST00000439294 405 ntBASIC2.08□□□□□ -2.08
CDX2Q99626 AC009296.1-201ENST00000443146 155 ntBASIC2.08□□□□□ -2.08
CDX2Q99626 CBWD4P-201ENST00000445695 655 ntBASIC2.08□□□□□ -2.08
CDX2Q99626 AL357793.2-201ENST00000447056 850 ntTSL 3 BASIC2.08□□□□□ -2.08
CDX2Q99626 VCAN-AS1-202ENST00000513899 453 ntTSL 3 BASIC2.08□□□□□ -2.08
CDX2Q99626 RNU6ATAC9P-201ENST00000516210 116 ntBASIC2.08□□□□□ -2.08
CDX2Q99626 CCDC7-208ENST00000537047 657 ntAPPRIS ALT2 TSL 1 (best) BASIC2.08□□□□□ -2.08
CDX2Q99626 TRAV28-201ENST00000557548 323 ntBASIC2.08□□□□□ -2.08
CDX2Q99626 MTCYBP23-201ENST00000558717 1102 ntBASIC2.08□□□□□ -2.08
CDX2Q99626 AC009107.1-201ENST00000561923 330 ntTSL 3 BASIC2.08□□□□□ -2.08
CDX2Q99626 AC068135.2-201ENST00000569293 1028 ntBASIC2.08□□□□□ -2.08
CDX2Q99626 AC096708.3-201ENST00000584226 559 ntTSL 2 BASIC2.08□□□□□ -2.08
CDX2Q99626 OR1M4P-201ENST00000589199 287 ntBASIC2.08□□□□□ -2.08
CDX2Q99626 CLIC4P2-201ENST00000601934 717 ntBASIC2.08□□□□□ -2.08
CDX2Q99626 AC112220.3-201ENST00000605502 502 ntBASIC2.08□□□□□ -2.08
CDX2Q99626 AL512598.1-201ENST00000610158 273 ntBASIC2.08□□□□□ -2.08
CDX2Q99626 AC009159.2-201ENST00000617603 606 ntBASIC2.08□□□□□ -2.08
CDX2Q99626 OR8H2-202ENST00000618136 1038 ntAPPRIS ALT1 BASIC2.08□□□□□ -2.08
CDX2Q99626 AC073052.2-202ENST00000622296 775 ntTSL 5 BASIC2.08□□□□□ -2.08
CDX2Q99626 AC012593.1-211ENST00000625996 799 ntTSL 5 BASIC2.08□□□□□ -2.08
CDX2Q99626 TECRL-202ENST00000507440 2876 ntTSL 5 BASIC2.08□□□□□ -2.08
CDX2Q99626 CBLL1-201ENST00000222597 2003 ntAPPRIS ALT1 TSL 1 (best) BASIC2.08□□□□□ -2.08
CDX2Q99626 XPO4-202ENST00000400602 9884 ntAPPRIS ALT1 TSL 5 BASIC2.08□□□□□ -2.08
CDX2Q99626 VPS54-202ENST00000354504 3594 ntTSL 1 (best) BASIC2.08□□□□□ -2.08
CDX2Q99626 AL391987.6-201ENST00000305671 199 ntBASIC2.07□□□□□ -2.08
CDX2Q99626 RNU6-97P-201ENST00000363387 104 ntBASIC2.07□□□□□ -2.08
CDX2Q99626 IVNS1ABP-201ENST00000367497 746 ntTSL 5 BASIC2.07□□□□□ -2.08
CDX2Q99626 RNU6-741P-201ENST00000383889 107 ntBASIC2.07□□□□□ -2.08
CDX2Q99626 RNU6-114P-201ENST00000384704 105 ntBASIC2.07□□□□□ -2.08
CDX2Q99626 MIR144-201ENST00000384886 86 ntBASIC2.07□□□□□ -2.08
CDX2Q99626 TRAJ59-201ENST00000390480 54 ntAPPRIS P1 BASIC2.07□□□□□ -2.08
CDX2Q99626 AL109755.1-201ENST00000401791 649 ntBASIC2.07□□□□□ -2.08
CDX2Q99626 RNA5SP181-201ENST00000410246 98 ntBASIC2.07□□□□□ -2.08
CDX2Q99626 AC004965.1-201ENST00000413033 213 ntBASIC2.07□□□□□ -2.08
CDX2Q99626 LINC01040-201ENST00000425048 666 ntTSL 2 BASIC2.07□□□□□ -2.08
CDX2Q99626 AC092648.1-201ENST00000425870 423 ntBASIC2.07□□□□□ -2.08
CDX2Q99626 AC007566.1-201ENST00000427458 643 ntTSL 5 BASIC2.07□□□□□ -2.08
CDX2Q99626 AC006369.2-201ENST00000431712 384 ntTSL 3 BASIC2.07□□□□□ -2.08
CDX2Q99626 AL512844.2-201ENST00000433990 593 ntBASIC2.07□□□□□ -2.08
CDX2Q99626 AL451074.3-201ENST00000437709 472 ntBASIC2.07□□□□□ -2.08
CDX2Q99626 Z82210.1-201ENST00000440037 231 ntBASIC2.07□□□□□ -2.08
CDX2Q99626 PIGFP3-201ENST00000441918 722 ntBASIC2.07□□□□□ -2.08
CDX2Q99626 RPL12P25-201ENST00000455592 494 ntBASIC2.07□□□□□ -2.08
CDX2Q99626 TOMM22P6-201ENST00000465035 409 ntBASIC2.07□□□□□ -2.08
CDX2Q99626 LNX1-AS1-202ENST00000510785 550 ntTSL 2 BASIC2.07□□□□□ -2.08
CDX2Q99626 AC010587.2-201ENST00000511727 448 ntBASIC2.07□□□□□ -2.08
CDX2Q99626 AC109927.1-202ENST00000511951 282 ntTSL 3 BASIC2.07□□□□□ -2.08
CDX2Q99626 RNA5SP82-201ENST00000516707 92 ntBASIC2.07□□□□□ -2.08
CDX2Q99626 AC087518.1-201ENST00000524098 187 ntTSL 3 BASIC2.07□□□□□ -2.08
CDX2Q99626 SUB1P1-201ENST00000524415 382 ntBASIC2.07□□□□□ -2.08
CDX2Q99626 AP000756.1-201ENST00000532606 679 ntTSL 2 BASIC2.07□□□□□ -2.08
CDX2Q99626 AC023538.1-201ENST00000534576 736 ntBASIC2.07□□□□□ -2.08
CDX2Q99626 LRRC34P1-201ENST00000542742 915 ntBASIC2.07□□□□□ -2.08
CDX2Q99626 AC130371.1-204ENST00000576197 401 ntTSL 3 BASIC2.07□□□□□ -2.08
CDX2Q99626 AC022662.1-201ENST00000580252 331 ntBASIC2.07□□□□□ -2.08
CDX2Q99626 Z99289.3-201ENST00000605586 594 ntBASIC2.07□□□□□ -2.08
CDX2Q99626 AC080013.3-201ENST00000606839 578 ntBASIC2.07□□□□□ -2.08
CDX2Q99626 AC087683.2-201ENST00000611384 326 ntBASIC2.07□□□□□ -2.08
CDX2Q99626 MIR6895-201ENST00000613497 78 ntBASIC2.07□□□□□ -2.08
CDX2Q99626 AC022079.1-201ENST00000621546 602 ntBASIC2.07□□□□□ -2.08
CDX2Q99626 AC009268.2-201ENST00000621925 457 ntBASIC2.07□□□□□ -2.08
CDX2Q99626 OR8K3-202ENST00000623845 939 ntAPPRIS P1 BASIC2.07□□□□□ -2.08
CDX2Q99626 AC079597.1-201ENST00000624306 508 ntBASIC2.07□□□□□ -2.08
Retrieved 100 of 98,524 protein–RNA pairs in 123.3 ms