Protein–RNA interactions for Protein: Q99567

NUP88, Nuclear pore complex protein Nup88, humanhuman

Predicted RBP Predictions only

Length 741 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NUP88Q99567 AL033504.1-201ENST00000427015 773 ntTSL 2 BASIC3.95□□□□□ -1.78
NUP88Q99567 ATP6V0E1P4-201ENST00000427294 242 ntBASIC3.95□□□□□ -1.78
NUP88Q99567 AL591704.1-201ENST00000432574 275 ntBASIC3.95□□□□□ -1.78
NUP88Q99567 SNRPEP4-201ENST00000435815 279 ntBASIC3.95□□□□□ -1.78
NUP88Q99567 RPL30P14-201ENST00000482744 348 ntBASIC3.95□□□□□ -1.78
NUP88Q99567 RN7SL504P-201ENST00000494496 287 ntBASIC3.95□□□□□ -1.78
NUP88Q99567 FCF1P8-201ENST00000510322 597 ntBASIC3.95□□□□□ -1.78
NUP88Q99567 AC097375.2-201ENST00000510416 579 ntTSL 5 BASIC3.95□□□□□ -1.78
NUP88Q99567 NDUFB4P9-201ENST00000511646 388 ntBASIC3.95□□□□□ -1.78
NUP88Q99567 RNU6-358P-201ENST00000516564 75 ntBASIC3.95□□□□□ -1.78
NUP88Q99567 AC006518.2-202ENST00000544947 297 ntTSL 2 BASIC3.95□□□□□ -1.78
NUP88Q99567 TGIF1P1-201ENST00000558095 802 ntBASIC3.95□□□□□ -1.78
NUP88Q99567 MAFTRR-204ENST00000568389 506 ntTSL 4 BASIC3.95□□□□□ -1.78
NUP88Q99567 MIR5583-1-201ENST00000580941 59 ntBASIC3.95□□□□□ -1.78
NUP88Q99567 AC060780.3-201ENST00000589464 80 ntBASIC3.95□□□□□ -1.78
NUP88Q99567 YPEL5P2-201ENST00000605553 359 ntBASIC3.95□□□□□ -1.78
NUP88Q99567 AC100810.6-201ENST00000638068 285 ntBASIC3.95□□□□□ -1.78
NUP88Q99567 ADGRV1-201ENST00000405460 19557 ntAPPRIS P1 TSL 1 (best) BASIC3.95□□□□□ -1.78
NUP88Q99567 XRN1-202ENST00000392981 5383 ntAPPRIS ALT1 TSL 1 (best) BASIC3.95□□□□□ -1.78
NUP88Q99567 GPRC6A-202ENST00000368549 2622 ntTSL 1 (best) BASIC3.95□□□□□ -1.78
NUP88Q99567 ATM-203ENST00000452508 12954 ntAPPRIS P1 TSL 1 (best) BASIC3.95□□□□□ -1.78
NUP88Q99567 NR3C1-212ENST00000504572 3389 ntAPPRIS ALT1 TSL 1 (best) BASIC3.95□□□□□ -1.78
NUP88Q99567 CCDC168-201ENST00000322527 21466 ntAPPRIS P1 TSL 3 BASIC3.95□□□□□ -1.78
NUP88Q99567 NUFIP2-201ENST00000225388 10850 ntAPPRIS P1 TSL 1 (best) BASIC3.95□□□□□ -1.78
NUP88Q99567 LIG4-205ENST00000614526 3884 ntTSL 2 BASIC3.95□□□□□ -1.78
NUP88Q99567 AC093274.1-201ENST00000503488 5454 ntTSL 5 BASIC3.94□□□□□ -1.78
NUP88Q99567 AC103993.1-201ENST00000521500 1584 ntTSL 5 BASIC3.94□□□□□ -1.78
NUP88Q99567 TNPO1P3-201ENST00000436471 2662 ntBASIC3.94□□□□□ -1.78
NUP88Q99567 AC066616.2-201ENST00000559334 1481 ntBASIC3.94□□□□□ -1.78
NUP88Q99567 SNORA4.3-201ENST00000365564 137 ntBASIC3.94□□□□□ -1.78
NUP88Q99567 PARD3-204ENST00000374768 799 ntTSL 3 BASIC3.94□□□□□ -1.78
NUP88Q99567 RNU6-140P-201ENST00000384566 108 ntBASIC3.94□□□□□ -1.78
NUP88Q99567 SNORA48.2-201ENST00000390926 124 ntBASIC3.94□□□□□ -1.78
NUP88Q99567 RNA5SP118-201ENST00000410385 109 ntBASIC3.94□□□□□ -1.78
NUP88Q99567 Z99755.1-201ENST00000414048 380 ntBASIC3.94□□□□□ -1.78
NUP88Q99567 AL138737.1-202ENST00000418834 876 ntTSL 3 BASIC3.94□□□□□ -1.78
NUP88Q99567 AC012498.1-201ENST00000424037 437 ntBASIC3.94□□□□□ -1.78
NUP88Q99567 GYPB-201ENST00000429670 239 ntTSL 1 (best) BASIC3.94□□□□□ -1.78
NUP88Q99567 AC079799.1-201ENST00000430696 331 ntTSL 3 BASIC3.94□□□□□ -1.78
NUP88Q99567 AC008067.1-203ENST00000430876 359 ntTSL 3 BASIC3.94□□□□□ -1.78
NUP88Q99567 AL451060.1-203ENST00000431307 362 ntTSL 3 BASIC3.94□□□□□ -1.78
NUP88Q99567 AL121601.2-201ENST00000438019 707 ntBASIC3.94□□□□□ -1.78
NUP88Q99567 MRPS31P2-201ENST00000451581 518 ntBASIC3.94□□□□□ -1.78
NUP88Q99567 SCARNA18-201ENST00000459004 134 ntBASIC3.94□□□□□ -1.78
NUP88Q99567 RNU7-180P-201ENST00000459240 63 ntBASIC3.94□□□□□ -1.78
NUP88Q99567 AC018710.1-201ENST00000506509 158 ntBASIC3.94□□□□□ -1.78
NUP88Q99567 RNA5SP165-201ENST00000517142 115 ntBASIC3.94□□□□□ -1.78
NUP88Q99567 RNU6-1315P-201ENST00000517187 99 ntBASIC3.94□□□□□ -1.78
NUP88Q99567 AP000790.2-201ENST00000534388 522 ntTSL 3 BASIC3.94□□□□□ -1.78
NUP88Q99567 AC046158.1-201ENST00000563408 719 ntTSL 3 BASIC3.94□□□□□ -1.78
NUP88Q99567 AC007631.1-201ENST00000578545 189 ntTSL 3 BASIC3.94□□□□□ -1.78
NUP88Q99567 AC005357.2-201ENST00000586473 583 ntTSL 2 BASIC3.94□□□□□ -1.78
NUP88Q99567 AC010928.1-202ENST00000589354 473 ntTSL 3 BASIC3.94□□□□□ -1.78
NUP88Q99567 AC012531.5-201ENST00000611375 151 ntBASIC3.94□□□□□ -1.78
NUP88Q99567 GYPB-216ENST00000638448 363 ntAPPRIS P1 TSL 1 (best) BASIC3.94□□□□□ -1.78
NUP88Q99567 AC099654.14-201ENST00000638599 341 ntBASIC3.94□□□□□ -1.78
NUP88Q99567 SLC16A10-201ENST00000368850 10051 ntTSL 1 (best) BASIC3.94□□□□□ -1.78
NUP88Q99567 AC032011.1-201ENST00000611703 1549 ntBASIC3.94□□□□□ -1.78
NUP88Q99567 YWHAZ-211ENST00000457309 3007 ntAPPRIS P1 TSL 2 BASIC3.94□□□□□ -1.78
NUP88Q99567 GABRG2-208ENST00000638552 3710 ntTSL 5 BASIC3.94□□□□□ -1.78
NUP88Q99567 PSG8-202ENST00000401467 1686 ntTSL 5 BASIC3.94□□□□□ -1.78
NUP88Q99567 LUZP2-208ENST00000620308 4981 ntTSL 5 BASIC3.93□□□□□ -1.78
NUP88Q99567 DEFB107A-201ENST00000335021 389 ntAPPRIS P1 TSL 1 (best) BASIC3.93□□□□□ -1.78
NUP88Q99567 DEFB107B-201ENST00000355602 389 ntAPPRIS P1 TSL 1 (best) BASIC3.93□□□□□ -1.78
NUP88Q99567 Y_RNA.231-201ENST00000364358 102 ntBASIC3.93□□□□□ -1.78
NUP88Q99567 RNU6-715P-201ENST00000365204 103 ntBASIC3.93□□□□□ -1.78
NUP88Q99567 Y_RNA.534-201ENST00000384599 112 ntBASIC3.93□□□□□ -1.78
NUP88Q99567 MIR128-1-201ENST00000384921 82 ntBASIC3.93□□□□□ -1.78
NUP88Q99567 AL592114.1-201ENST00000403842 483 ntBASIC3.93□□□□□ -1.78
NUP88Q99567 RNU2-68P-201ENST00000410878 191 ntBASIC3.93□□□□□ -1.78
NUP88Q99567 AL500522.1-201ENST00000423667 318 ntTSL 3 BASIC3.93□□□□□ -1.78
NUP88Q99567 LINC01810-201ENST00000450397 411 ntTSL 3 BASIC3.93□□□□□ -1.78
NUP88Q99567 RN7SL807P-201ENST00000470923 297 ntBASIC3.93□□□□□ -1.78
NUP88Q99567 SUMO2P6-201ENST00000505273 288 ntBASIC3.93□□□□□ -1.78
NUP88Q99567 AC006445.2-201ENST00000510061 472 ntBASIC3.93□□□□□ -1.78
NUP88Q99567 PHBP14-201ENST00000512887 367 ntBASIC3.93□□□□□ -1.78
NUP88Q99567 RNU6-1038P-201ENST00000516516 104 ntBASIC3.93□□□□□ -1.78
NUP88Q99567 RNU6-1282P-201ENST00000516735 96 ntBASIC3.93□□□□□ -1.78
NUP88Q99567 NDUFB9P3-201ENST00000521269 501 ntBASIC3.93□□□□□ -1.78
NUP88Q99567 AC134698.4-201ENST00000523451 826 ntBASIC3.93□□□□□ -1.78
NUP88Q99567 AF235103.2-201ENST00000525753 346 ntBASIC3.93□□□□□ -1.78
NUP88Q99567 AC026894.1-202ENST00000533843 477 ntTSL 5 BASIC3.93□□□□□ -1.78
NUP88Q99567 LINC02305-201ENST00000554142 476 ntTSL 3 BASIC3.93□□□□□ -1.78
NUP88Q99567 MIR5692A1-201ENST00000580523 69 ntBASIC3.93□□□□□ -1.78
NUP88Q99567 MIR548AC-201ENST00000585049 88 ntBASIC3.93□□□□□ -1.78
NUP88Q99567 AC004805.2-201ENST00000605382 482 ntBASIC3.93□□□□□ -1.78
NUP88Q99567 AC005000.2-201ENST00000605468 310 ntBASIC3.93□□□□□ -1.78
NUP88Q99567 RMST_8.1-201ENST00000610287 165 ntBASIC3.93□□□□□ -1.78
NUP88Q99567 KCNQ1OT1_3.1-201ENST00000616504 116 ntBASIC3.93□□□□□ -1.78
NUP88Q99567 MIR6076-201ENST00000617521 113 ntBASIC3.93□□□□□ -1.78
NUP88Q99567 SNORD39.4-201ENST00000620099 78 ntBASIC3.93□□□□□ -1.78
NUP88Q99567 AC022149.2-201ENST00000621061 203 ntBASIC3.93□□□□□ -1.78
NUP88Q99567 CYLC1-202ENST00000621735 379 ntAPPRIS ALT2 TSL 3 BASIC3.93□□□□□ -1.78
NUP88Q99567 SEPT14P19-202ENST00000632397 370 ntTSL 3 BASIC3.93□□□□□ -1.78
NUP88Q99567 ZNF804B-202ENST00000611114 3968 ntTSL 5 BASIC3.93□□□□□ -1.78
NUP88Q99567 SLC5A3-201ENST00000381151 11576 ntAPPRIS P1 TSL 1 (best) BASIC3.93□□□□□ -1.78
NUP88Q99567 HSPA8P4-201ENST00000511877 1920 ntBASIC3.93□□□□□ -1.78
NUP88Q99567 ERBIN-201ENST00000284037 8647 ntTSL 1 (best) BASIC3.93□□□□□ -1.78
NUP88Q99567 FIGNL1-202ENST00000395556 3485 ntAPPRIS P1 TSL 2 BASIC3.93□□□□□ -1.78
NUP88Q99567 PHF6-201ENST00000332070 4759 ntAPPRIS P2 TSL 1 (best) BASIC3.93□□□□□ -1.78
Retrieved 100 of 98,524 protein–RNA pairs in 105.1 ms