Protein–RNA interactions for Protein: Q96RU2

USP28, Ubiquitin carboxyl-terminal hydrolase 28, humanhuman

Predictions only

Length 1,077 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP28Q96RU2 AC107401.1-201ENST00000503426 685 ntBASIC2.92□□□□□ -1.94
USP28Q96RU2 VN1R104P-201ENST00000505115 1009 ntBASIC2.92□□□□□ -1.94
USP28Q96RU2 SNORA31.22-201ENST00000517204 135 ntBASIC2.92□□□□□ -1.94
USP28Q96RU2 LYRM2-203ENST00000520318 677 ntTSL 2 BASIC2.92□□□□□ -1.94
USP28Q96RU2 C14orf105-204ENST00000526336 598 ntTSL 4 BASIC2.92□□□□□ -1.94
USP28Q96RU2 DEFB108A-201ENST00000530110 222 ntBASIC2.92□□□□□ -1.94
USP28Q96RU2 AC087318.1-201ENST00000536786 389 ntTSL 3 BASIC2.92□□□□□ -1.94
USP28Q96RU2 OR5V1-216ENST00000543825 1048 ntAPPRIS P1 BASIC2.92□□□□□ -1.94
USP28Q96RU2 LINC02464-201ENST00000552060 368 ntTSL 2 BASIC2.92□□□□□ -1.94
USP28Q96RU2 PSMA4-204ENST00000558094 651 ntTSL 3 BASIC2.92□□□□□ -1.94
USP28Q96RU2 AL391840.1-201ENST00000571144 367 ntBASIC2.92□□□□□ -1.94
USP28Q96RU2 MIR3682-201ENST00000581338 84 ntBASIC2.92□□□□□ -1.94
USP28Q96RU2 MIR5092-201ENST00000583139 88 ntBASIC2.92□□□□□ -1.94
USP28Q96RU2 MIR4293-201ENST00000584305 78 ntBASIC2.92□□□□□ -1.94
USP28Q96RU2 KC877982.1-201ENST00000602313 470 ntBASIC2.92□□□□□ -1.94
USP28Q96RU2 AC107304.1-201ENST00000604229 296 ntBASIC2.92□□□□□ -1.94
USP28Q96RU2 AP000787.2-201ENST00000604432 568 ntBASIC2.92□□□□□ -1.94
USP28Q96RU2 AC103710.2-201ENST00000609912 942 ntBASIC2.92□□□□□ -1.94
USP28Q96RU2 AC090970.3-201ENST00000612566 866 ntBASIC2.92□□□□□ -1.94
USP28Q96RU2 AL603758.1-201ENST00000618654 241 ntBASIC2.92□□□□□ -1.94
USP28Q96RU2 WFDC11-203ENST00000618797 561 ntAPPRIS P1 TSL 5 BASIC2.92□□□□□ -1.94
USP28Q96RU2 AC027309.3-201ENST00000623419 351 ntBASIC2.92□□□□□ -1.94
USP28Q96RU2 AC019226.1-201ENST00000625666 515 ntBASIC2.92□□□□□ -1.94
USP28Q96RU2 AL157786.1-207ENST00000627771 695 ntBASIC2.92□□□□□ -1.94
USP28Q96RU2 TPTE2P4-201ENST00000258589 1605 ntBASIC2.92□□□□□ -1.94
USP28Q96RU2 ZNF883-201ENST00000619044 2051 ntAPPRIS P1 TSL 5 BASIC2.92□□□□□ -1.94
USP28Q96RU2 KCNIP4-207ENST00000509207 1301 ntTSL 1 (best) BASIC2.92□□□□□ -1.94
USP28Q96RU2 AC009487.2-201ENST00000420969 6821 ntBASIC2.91□□□□□ -1.94
USP28Q96RU2 HMGB1-201ENST00000326004 821 ntTSL 3 BASIC2.91□□□□□ -1.94
USP28Q96RU2 RNA5SP387-201ENST00000364226 106 ntBASIC2.91□□□□□ -1.94
USP28Q96RU2 Y_RNA.296-201ENST00000364930 108 ntBASIC2.91□□□□□ -1.94
USP28Q96RU2 MEIG1-201ENST00000378240 507 ntAPPRIS P1 TSL 2 BASIC2.91□□□□□ -1.94
USP28Q96RU2 DEFA7P-201ENST00000382676 285 ntBASIC2.91□□□□□ -1.94
USP28Q96RU2 SNORA20.2-201ENST00000383922 131 ntBASIC2.91□□□□□ -1.94
USP28Q96RU2 RNU6-432P-201ENST00000384196 109 ntBASIC2.91□□□□□ -1.94
USP28Q96RU2 RNU6-39P-201ENST00000384344 107 ntBASIC2.91□□□□□ -1.94
USP28Q96RU2 Y_RNA.554-201ENST00000384672 102 ntBASIC2.91□□□□□ -1.94
USP28Q96RU2 RNU6-780P-201ENST00000391030 104 ntBASIC2.91□□□□□ -1.94
USP28Q96RU2 MIR1290-201ENST00000408735 78 ntBASIC2.91□□□□□ -1.94
USP28Q96RU2 UBE2FP1-201ENST00000416536 447 ntBASIC2.91□□□□□ -1.94
USP28Q96RU2 AC083900.1-201ENST00000421964 469 ntTSL 2 BASIC2.91□□□□□ -1.94
USP28Q96RU2 AL136322.1-201ENST00000422250 548 ntTSL 4 BASIC2.91□□□□□ -1.94
USP28Q96RU2 RPS3AP44-201ENST00000425466 790 ntBASIC2.91□□□□□ -1.94
USP28Q96RU2 MTCO2P11-201ENST00000431069 680 ntBASIC2.91□□□□□ -1.94
USP28Q96RU2 RPL23AP30-201ENST00000432419 501 ntBASIC2.91□□□□□ -1.94
USP28Q96RU2 AC119618.1-201ENST00000434191 222 ntBASIC2.91□□□□□ -1.94
USP28Q96RU2 RPS15AP9-201ENST00000439856 381 ntBASIC2.91□□□□□ -1.94
USP28Q96RU2 AC005094.1-201ENST00000440420 368 ntBASIC2.91□□□□□ -1.94
USP28Q96RU2 AC007879.4-201ENST00000440545 361 ntTSL 3 BASIC2.91□□□□□ -1.94
USP28Q96RU2 RPL26P6-201ENST00000440913 438 ntBASIC2.91□□□□□ -1.94
USP28Q96RU2 AC018693.1-201ENST00000442829 550 ntTSL 4 BASIC2.91□□□□□ -1.94
USP28Q96RU2 MTND1P9-201ENST00000453775 944 ntBASIC2.91□□□□□ -1.94
USP28Q96RU2 MTND1P12-201ENST00000455231 147 ntBASIC2.91□□□□□ -1.94
USP28Q96RU2 AC010099.1-201ENST00000455434 375 ntBASIC2.91□□□□□ -1.94
USP28Q96RU2 AL359273.1-203ENST00000506295 602 ntTSL 1 (best) BASIC2.91□□□□□ -1.94
USP28Q96RU2 SLC25A15P5-201ENST00000508033 253 ntBASIC2.91□□□□□ -1.94
USP28Q96RU2 AL359273.1-201ENST00000510918 627 ntBASIC2.91□□□□□ -1.94
USP28Q96RU2 AC114316.1-201ENST00000511323 278 ntTSL 5 BASIC2.91□□□□□ -1.94
USP28Q96RU2 AC022483.1-201ENST00000514020 567 ntBASIC2.91□□□□□ -1.94
USP28Q96RU2 AC010280.1-201ENST00000515199 340 ntTSL 2 BASIC2.91□□□□□ -1.94
USP28Q96RU2 Vault.3-201ENST00000516676 95 ntBASIC2.91□□□□□ -1.94
USP28Q96RU2 SNORA70.24-201ENST00000517233 118 ntBASIC2.91□□□□□ -1.94
USP28Q96RU2 MTND1P5-201ENST00000517906 940 ntBASIC2.91□□□□□ -1.94
USP28Q96RU2 CDKL3-207ENST00000521755 586 ntTSL 5 BASIC2.91□□□□□ -1.94
USP28Q96RU2 AC022695.3-201ENST00000523385 478 ntTSL 3 BASIC2.91□□□□□ -1.94
USP28Q96RU2 FAM92A1P1-201ENST00000528023 890 ntBASIC2.91□□□□□ -1.94
USP28Q96RU2 TAS2R43-201ENST00000531678 1027 ntAPPRIS P1 BASIC2.91□□□□□ -1.94
USP28Q96RU2 ARL2BPP2-201ENST00000550907 489 ntBASIC2.91□□□□□ -1.94
USP28Q96RU2 AL352984.1-201ENST00000556949 276 ntTSL 3 BASIC2.91□□□□□ -1.94
USP28Q96RU2 AC009269.3-201ENST00000558429 472 ntTSL 5 BASIC2.91□□□□□ -1.94
USP28Q96RU2 TPRKBP2-201ENST00000565969 475 ntBASIC2.91□□□□□ -1.94
USP28Q96RU2 AC010547.2-201ENST00000568523 409 ntTSL 5 BASIC2.91□□□□□ -1.94
USP28Q96RU2 MIR3921-201ENST00000577308 85 ntBASIC2.91□□□□□ -1.94
USP28Q96RU2 AC019159.1-201ENST00000605094 187 ntBASIC2.91□□□□□ -1.94
USP28Q96RU2 ATP1B3P1-201ENST00000605365 821 ntBASIC2.91□□□□□ -1.94
USP28Q96RU2 AC004067.1-201ENST00000608733 700 ntBASIC2.91□□□□□ -1.94
USP28Q96RU2 AC004908.2-201ENST00000609090 574 ntBASIC2.91□□□□□ -1.94
USP28Q96RU2 AC092954.2-201ENST00000609103 430 ntBASIC2.91□□□□□ -1.94
USP28Q96RU2 AL161734.1-201ENST00000609720 557 ntBASIC2.91□□□□□ -1.94
USP28Q96RU2 AL158209.2-201ENST00000619266 216 ntBASIC2.91□□□□□ -1.94
USP28Q96RU2 AC068544.1-201ENST00000635064 248 ntTSL 5 BASIC2.91□□□□□ -1.94
USP28Q96RU2 AC005832.2-201ENST00000538921 1430 ntBASIC2.91□□□□□ -1.94
USP28Q96RU2 ATXN3L-201ENST00000380622 2164 ntAPPRIS P1 BASIC2.91□□□□□ -1.94
USP28Q96RU2 OLFM3-206ENST00000536598 2801 ntTSL 5 BASIC2.91□□□□□ -1.94
USP28Q96RU2 OFD1P6Y-202ENST00000451061 2724 ntBASIC2.91□□□□□ -1.94
USP28Q96RU2 TECRL-202ENST00000507440 2876 ntTSL 5 BASIC2.9□□□□□ -1.94
USP28Q96RU2 AC007336.1-201ENST00000576365 3828 ntBASIC2.9□□□□□ -1.94
USP28Q96RU2 TAB3-203ENST00000378930 6255 ntAPPRIS P1 TSL 1 (best) BASIC2.9□□□□□ -1.94
USP28Q96RU2 HSFY1-202ENST00000309834 1038 ntAPPRIS ALT2 TSL 1 (best) BASIC2.9□□□□□ -1.95
USP28Q96RU2 HSFY2-202ENST00000344884 1038 ntAPPRIS ALT2 TSL 1 (best) BASIC2.9□□□□□ -1.95
USP28Q96RU2 SNORD62.1-201ENST00000362541 86 ntBASIC2.9□□□□□ -1.95
USP28Q96RU2 RNU6-181P-201ENST00000363225 107 ntBASIC2.9□□□□□ -1.95
USP28Q96RU2 RNU6-169P-201ENST00000365336 107 ntBASIC2.9□□□□□ -1.95
USP28Q96RU2 MDM4-202ENST00000367180 547 ntTSL 3 BASIC2.9□□□□□ -1.95
USP28Q96RU2 CRISP3-203ENST00000371159 872 ntAPPRIS ALT2 TSL 5 BASIC2.9□□□□□ -1.95
USP28Q96RU2 RNU6-754P-201ENST00000391166 107 ntBASIC2.9□□□□□ -1.95
USP28Q96RU2 CALM2P3-201ENST00000400429 449 ntBASIC2.9□□□□□ -1.95
USP28Q96RU2 GSTA9P-201ENST00000406231 611 ntBASIC2.9□□□□□ -1.95
USP28Q96RU2 RNU2-36P-201ENST00000410361 191 ntBASIC2.9□□□□□ -1.95
USP28Q96RU2 RNU2-52P-201ENST00000410680 190 ntBASIC2.9□□□□□ -1.95
Retrieved 100 of 98,524 protein–RNA pairs in 97.7 ms