Protein–RNA interactions for Protein: Q96JC1

VPS39, Vam6/Vps39-like protein, humanhuman

Predictions only

Length 886 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39Q96JC1 MIR548AB-201ENST00000584917 84 ntBASIC2.55□□□□□ -2
VPS39Q96JC1 AC022150.3-201ENST00000599143 880 ntTSL 5 BASIC2.55□□□□□ -2
VPS39Q96JC1 BX546450.2-201ENST00000602419 435 ntTSL 5 BASIC2.55□□□□□ -2
VPS39Q96JC1 AC068790.3-201ENST00000602988 553 ntBASIC2.55□□□□□ -2
VPS39Q96JC1 AP001981.2-201ENST00000603241 418 ntBASIC2.55□□□□□ -2
VPS39Q96JC1 AC103710.1-201ENST00000610003 901 ntBASIC2.55□□□□□ -2
VPS39Q96JC1 AF246928.1-201ENST00000623768 87 ntBASIC2.55□□□□□ -2
VPS39Q96JC1 AC019226.2-201ENST00000625973 424 ntBASIC2.55□□□□□ -2
VPS39Q96JC1 IL33-202ENST00000417746 2327 ntTSL 2 BASIC2.54□□□□□ -2
VPS39Q96JC1 SHOC2-201ENST00000265277 3691 ntTSL 2 BASIC2.54□□□□□ -2
VPS39Q96JC1 NOC3L-201ENST00000371361 3455 ntAPPRIS P1 TSL 1 (best) BASIC2.54□□□□□ -2
VPS39Q96JC1 ANP32E-209ENST00000616917 2989 ntTSL 2 BASIC2.54□□□□□ -2
VPS39Q96JC1 MTND4P35-201ENST00000604257 1375 ntBASIC2.54□□□□□ -2
VPS39Q96JC1 RNU6-859P-201ENST00000362728 107 ntBASIC2.54□□□□□ -2
VPS39Q96JC1 RNU6-501P-201ENST00000364072 100 ntBASIC2.54□□□□□ -2
VPS39Q96JC1 C20orf187-201ENST00000378252 446 ntTSL 2 BASIC2.54□□□□□ -2
VPS39Q96JC1 AL139397.2-201ENST00000404529 772 ntBASIC2.54□□□□□ -2
VPS39Q96JC1 CYCSP48-201ENST00000417124 323 ntBASIC2.54□□□□□ -2
VPS39Q96JC1 AC073311.1-201ENST00000420146 505 ntTSL 5 BASIC2.54□□□□□ -2
VPS39Q96JC1 AL162726.4-201ENST00000422010 673 ntTSL 5 BASIC2.54□□□□□ -2
VPS39Q96JC1 AL353729.1-201ENST00000425044 720 ntBASIC2.54□□□□□ -2
VPS39Q96JC1 AL139289.1-201ENST00000436713 731 ntTSL 3 BASIC2.54□□□□□ -2
VPS39Q96JC1 ZNF736P5Y-201ENST00000451173 805 ntBASIC2.54□□□□□ -2
VPS39Q96JC1 AC093110.1-201ENST00000456363 602 ntTSL 2 BASIC2.54□□□□□ -2
VPS39Q96JC1 AC080013.2-201ENST00000460866 323 ntBASIC2.54□□□□□ -2
VPS39Q96JC1 LINC02118-202ENST00000510583 419 ntTSL 3 BASIC2.54□□□□□ -2
VPS39Q96JC1 AC114316.1-201ENST00000511323 278 ntTSL 5 BASIC2.54□□□□□ -2
VPS39Q96JC1 MEF2C-AS1-208ENST00000512585 741 ntTSL 5 BASIC2.54□□□□□ -2
VPS39Q96JC1 AC107934.1-201ENST00000522215 217 ntBASIC2.54□□□□□ -2
VPS39Q96JC1 EIF4BP1-201ENST00000554881 351 ntBASIC2.54□□□□□ -2
VPS39Q96JC1 PSMA4-204ENST00000558094 651 ntTSL 3 BASIC2.54□□□□□ -2
VPS39Q96JC1 PCLAF-207ENST00000559519 749 ntTSL 2 BASIC2.54□□□□□ -2
VPS39Q96JC1 SLC12A1-210ENST00000561031 735 ntTSL 2 BASIC2.54□□□□□ -2
VPS39Q96JC1 AL356432.3-201ENST00000568952 465 ntBASIC2.54□□□□□ -2
VPS39Q96JC1 MIR4293-201ENST00000584305 78 ntBASIC2.54□□□□□ -2
VPS39Q96JC1 RPS15AP11-201ENST00000594193 385 ntBASIC2.54□□□□□ -2
VPS39Q96JC1 AC005261.5-201ENST00000596280 355 ntBASIC2.54□□□□□ -2
VPS39Q96JC1 AL022161.1-201ENST00000604390 213 ntBASIC2.54□□□□□ -2
VPS39Q96JC1 AC069294.1-201ENST00000608397 350 ntBASIC2.54□□□□□ -2
VPS39Q96JC1 MIR7106-201ENST00000612419 65 ntBASIC2.54□□□□□ -2
VPS39Q96JC1 AC122133.1-201ENST00000613964 233 ntBASIC2.54□□□□□ -2
VPS39Q96JC1 CLECL1-204ENST00000621400 611 ntAPPRIS ALT2 TSL 5 BASIC2.54□□□□□ -2
VPS39Q96JC1 AC006386.2-201ENST00000624491 75 ntBASIC2.54□□□□□ -2
VPS39Q96JC1 AC012005.1-201ENST00000624575 75 ntBASIC2.54□□□□□ -2
VPS39Q96JC1 AC093591.3-201ENST00000634516 308 ntBASIC2.54□□□□□ -2
VPS39Q96JC1 AC006927.3-201ENST00000638789 384 ntBASIC2.54□□□□□ -2
VPS39Q96JC1 DLD-214ENST00000639772 421 ntTSL 5 BASIC2.54□□□□□ -2
VPS39Q96JC1 PAPPA-AS1-201ENST00000445861 2450 ntBASIC2.53□□□□□ -2
VPS39Q96JC1 OR5J1P-201ENST00000313544 939 ntBASIC2.53□□□□□ -2
VPS39Q96JC1 MIR6073-201ENST00000352083 89 ntBASIC2.53□□□□□ -2
VPS39Q96JC1 IVNS1ABP-201ENST00000367497 746 ntTSL 5 BASIC2.53□□□□□ -2
VPS39Q96JC1 AL390198.1-201ENST00000376445 320 ntTSL 2 BASIC2.53□□□□□ -2
VPS39Q96JC1 AL021407.1-201ENST00000404531 386 ntBASIC2.53□□□□□ -2
VPS39Q96JC1 AL359634.1-202ENST00000404721 284 ntBASIC2.53□□□□□ -2
VPS39Q96JC1 MAGI2-AS2-201ENST00000411616 476 ntTSL 2 BASIC2.53□□□□□ -2
VPS39Q96JC1 LINC02559-201ENST00000420391 188 ntTSL 2 BASIC2.53□□□□□ -2
VPS39Q96JC1 AL109913.1-201ENST00000421173 514 ntBASIC2.53□□□□□ -2
VPS39Q96JC1 AL162414.1-201ENST00000426204 744 ntTSL 3 BASIC2.53□□□□□ -2
VPS39Q96JC1 LINC01724-201ENST00000430519 621 ntTSL 3 BASIC2.53□□□□□ -2
VPS39Q96JC1 LINC00189-202ENST00000431661 308 ntTSL 5 BASIC2.53□□□□□ -2
VPS39Q96JC1 RPL36AP53-201ENST00000432891 316 ntBASIC2.53□□□□□ -2
VPS39Q96JC1 AC005094.1-201ENST00000440420 368 ntBASIC2.53□□□□□ -2
VPS39Q96JC1 AC025750.2-201ENST00000442609 450 ntBASIC2.53□□□□□ -2
VPS39Q96JC1 GAS5-221ENST00000450589 632 ntTSL 1 (best) BASIC2.53□□□□□ -2
VPS39Q96JC1 AL137847.2-201ENST00000458111 527 ntTSL 3 BASIC2.53□□□□□ -2
VPS39Q96JC1 FSBP-201ENST00000481490 1158 ntTSL 1 (best) BASIC2.53□□□□□ -2
VPS39Q96JC1 RNU6-1003P-201ENST00000517099 105 ntBASIC2.53□□□□□ -2
VPS39Q96JC1 AP003181.2-201ENST00000528941 181 ntBASIC2.53□□□□□ -2
VPS39Q96JC1 AC008083.1-201ENST00000547748 663 ntTSL 2 BASIC2.53□□□□□ -2
VPS39Q96JC1 AC006199.1-201ENST00000548728 219 ntBASIC2.53□□□□□ -2
VPS39Q96JC1 AL445074.1-201ENST00000555362 318 ntTSL 2 BASIC2.53□□□□□ -2
VPS39Q96JC1 AL358333.2-201ENST00000556834 529 ntTSL 5 BASIC2.53□□□□□ -2
VPS39Q96JC1 AC009127.3-201ENST00000570531 403 ntBASIC2.53□□□□□ -2
VPS39Q96JC1 MIR3167-201ENST00000579623 85 ntBASIC2.53□□□□□ -2
VPS39Q96JC1 MIR4765-201ENST00000585007 77 ntBASIC2.53□□□□□ -2
VPS39Q96JC1 AC112187.2-201ENST00000604345 283 ntBASIC2.53□□□□□ -2
VPS39Q96JC1 AC007619.2-201ENST00000605743 379 ntBASIC2.53□□□□□ -2
VPS39Q96JC1 RNF219-AS1-205ENST00000605996 792 ntTSL 5 BASIC2.53□□□□□ -2
VPS39Q96JC1 uc_338.14-201ENST00000613162 166 ntBASIC2.53□□□□□ -2
VPS39Q96JC1 AC011939.3-201ENST00000613686 466 ntBASIC2.53□□□□□ -2
VPS39Q96JC1 AC009159.1-201ENST00000618386 642 ntBASIC2.53□□□□□ -2
VPS39Q96JC1 CAPZA2-214ENST00000628758 525 ntTSL 5 BASIC2.53□□□□□ -2
VPS39Q96JC1 TMEM232-201ENST00000455884 2501 ntAPPRIS P2 TSL 2 BASIC2.52□□□□□ -2.01
VPS39Q96JC1 OR51A4-202ENST00000641898 4393 ntAPPRIS P1 BASIC2.52□□□□□ -2.01
VPS39Q96JC1 TXLNGY-201ENST00000253320 7299 ntTSL 2 BASIC2.52□□□□□ -2.01
VPS39Q96JC1 QSER1-204ENST00000527788 5052 ntTSL 2 BASIC2.52□□□□□ -2.01
VPS39Q96JC1 AL139276.1-201ENST00000311910 1001 ntBASIC2.52□□□□□ -2.01
VPS39Q96JC1 RNY4P16-201ENST00000364768 94 ntBASIC2.52□□□□□ -2.01
VPS39Q96JC1 RNU6-533P-201ENST00000384144 107 ntBASIC2.52□□□□□ -2.01
VPS39Q96JC1 AF228730.1-201ENST00000397972 663 ntBASIC2.52□□□□□ -2.01
VPS39Q96JC1 AL031577.2-201ENST00000404133 280 ntBASIC2.52□□□□□ -2.01
VPS39Q96JC1 AL162578.1-201ENST00000406202 378 ntBASIC2.52□□□□□ -2.01
VPS39Q96JC1 AC104653.1-201ENST00000420579 578 ntTSL 2 BASIC2.52□□□□□ -2.01
VPS39Q96JC1 GS1-594A7.3-201ENST00000421585 574 ntTSL 2 BASIC2.52□□□□□ -2.01
VPS39Q96JC1 MTND4P20-201ENST00000424125 869 ntBASIC2.52□□□□□ -2.01
VPS39Q96JC1 AC092447.3-201ENST00000426027 686 ntBASIC2.52□□□□□ -2.01
VPS39Q96JC1 ISCA1P1-201ENST00000426679 387 ntBASIC2.52□□□□□ -2.01
VPS39Q96JC1 AL356277.3-201ENST00000432484 618 ntTSL 3 BASIC2.52□□□□□ -2.01
VPS39Q96JC1 TIMM9P1-201ENST00000436122 256 ntBASIC2.52□□□□□ -2.01
VPS39Q96JC1 AL161651.1-201ENST00000440882 223 ntBASIC2.52□□□□□ -2.01
Retrieved 100 of 98,524 protein–RNA pairs in 98.2 ms