Protein–RNA interactions for Protein: Q96DZ5

CLIP3, CAP-Gly domain-containing linker protein 3, humanhuman

Predictions only

Length 547 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP3Q96DZ5 AC108516.1-201ENST00000503666 257 ntTSL 2 BASIC4.05□□□□□ -1.76
CLIP3Q96DZ5 RNA5SP315-201ENST00000516340 116 ntBASIC4.05□□□□□ -1.76
CLIP3Q96DZ5 RNU6-764P-201ENST00000516396 105 ntBASIC4.05□□□□□ -1.76
CLIP3Q96DZ5 Y_RNA.689-201ENST00000516589 107 ntBASIC4.05□□□□□ -1.76
CLIP3Q96DZ5 RNU6-256P-201ENST00000516747 97 ntBASIC4.05□□□□□ -1.76
CLIP3Q96DZ5 RNA5SP503-201ENST00000517047 117 ntBASIC4.05□□□□□ -1.76
CLIP3Q96DZ5 RNA5SP312-201ENST00000517068 116 ntBASIC4.05□□□□□ -1.76
CLIP3Q96DZ5 HTN3-202ENST00000526767 578 ntAPPRIS P2 TSL 1 (best) BASIC4.05□□□□□ -1.76
CLIP3Q96DZ5 AC113192.1-201ENST00000527270 321 ntTSL 3 BASIC4.05□□□□□ -1.76
CLIP3Q96DZ5 AC100770.1-201ENST00000532310 322 ntBASIC4.05□□□□□ -1.76
CLIP3Q96DZ5 MIR5690-201ENST00000583739 73 ntBASIC4.05□□□□□ -1.76
CLIP3Q96DZ5 AC003973.1-201ENST00000600071 546 ntTSL 4 BASIC4.05□□□□□ -1.76
CLIP3Q96DZ5 AC104662.1-201ENST00000604448 511 ntBASIC4.05□□□□□ -1.76
CLIP3Q96DZ5 AC010201.1-201ENST00000605051 540 ntBASIC4.05□□□□□ -1.76
CLIP3Q96DZ5 AC009570.1-201ENST00000609599 745 ntBASIC4.05□□□□□ -1.76
CLIP3Q96DZ5 AL390240.1-201ENST00000612950 384 ntBASIC4.05□□□□□ -1.76
CLIP3Q96DZ5 AL359547.2-201ENST00000615810 418 ntBASIC4.05□□□□□ -1.76
CLIP3Q96DZ5 AL138721.1-201ENST00000616756 179 ntBASIC4.05□□□□□ -1.76
CLIP3Q96DZ5 AC092628.2-201ENST00000622492 339 ntBASIC4.05□□□□□ -1.76
CLIP3Q96DZ5 AC008013.2-202ENST00000637965 364 ntBASIC4.05□□□□□ -1.76
CLIP3Q96DZ5 PSMD5-AS1-215ENST00000640622 205 ntBASIC4.05□□□□□ -1.76
CLIP3Q96DZ5 RTKN2-201ENST00000315289 2383 ntTSL 2 BASIC4.05□□□□□ -1.76
CLIP3Q96DZ5 CPXCR1-202ENST00000373111 1577 ntAPPRIS P1 TSL 2 BASIC4.05□□□□□ -1.76
CLIP3Q96DZ5 TMEM59-205ENST00000371348 1911 ntTSL 1 (best) BASIC4.05□□□□□ -1.76
CLIP3Q96DZ5 AL033397.1-201ENST00000502390 3653 ntTSL 2 BASIC4.05□□□□□ -1.76
CLIP3Q96DZ5 PLCZ1-209ENST00000539875 1398 ntTSL 1 (best) BASIC4.04□□□□□ -1.76
CLIP3Q96DZ5 DLG1-217ENST00000452595 3053 ntTSL 2 BASIC4.04□□□□□ -1.76
CLIP3Q96DZ5 ATP13A3-203ENST00000439040 7720 ntAPPRIS P1 TSL 5 BASIC4.04□□□□□ -1.76
CLIP3Q96DZ5 SLC17A4-203ENST00000439485 3699 ntTSL 5 BASIC4.04□□□□□ -1.76
CLIP3Q96DZ5 CCNYL2-202ENST00000637719 3311 ntTSL 2 BASIC4.04□□□□□ -1.76
CLIP3Q96DZ5 OR10A7-201ENST00000326258 951 ntAPPRIS P1 BASIC4.04□□□□□ -1.76
CLIP3Q96DZ5 Y_RNA.135-201ENST00000363439 95 ntBASIC4.04□□□□□ -1.76
CLIP3Q96DZ5 Y_RNA.149-201ENST00000363558 117 ntBASIC4.04□□□□□ -1.76
CLIP3Q96DZ5 RNA5SP322-201ENST00000363617 119 ntBASIC4.04□□□□□ -1.76
CLIP3Q96DZ5 SNORD113-7-201ENST00000363762 77 ntBASIC4.04□□□□□ -1.76
CLIP3Q96DZ5 Y_RNA.188-201ENST00000363952 111 ntBASIC4.04□□□□□ -1.76
CLIP3Q96DZ5 SNORD115-7-201ENST00000365306 82 ntBASIC4.04□□□□□ -1.76
CLIP3Q96DZ5 RNU6-26P-201ENST00000383985 107 ntBASIC4.04□□□□□ -1.76
CLIP3Q96DZ5 Y_RNA.482-201ENST00000384377 111 ntBASIC4.04□□□□□ -1.76
CLIP3Q96DZ5 RNU1-13P-201ENST00000384499 162 ntBASIC4.04□□□□□ -1.76
CLIP3Q96DZ5 HSPE1P8-201ENST00000406997 288 ntBASIC4.04□□□□□ -1.76
CLIP3Q96DZ5 MIR1911-201ENST00000410783 80 ntBASIC4.04□□□□□ -1.76
CLIP3Q96DZ5 Y_RNA.646-201ENST00000410980 101 ntBASIC4.04□□□□□ -1.76
CLIP3Q96DZ5 AL513365.2-201ENST00000423060 529 ntTSL 2 BASIC4.04□□□□□ -1.76
CLIP3Q96DZ5 MTCYBP10-201ENST00000424905 650 ntBASIC4.04□□□□□ -1.76
CLIP3Q96DZ5 CALM2P2-201ENST00000428512 440 ntBASIC4.04□□□□□ -1.76
CLIP3Q96DZ5 LINC00844-201ENST00000432535 477 ntTSL 2 BASIC4.04□□□□□ -1.76
CLIP3Q96DZ5 AL591212.2-201ENST00000433923 257 ntBASIC4.04□□□□□ -1.76
CLIP3Q96DZ5 AC092573.2-201ENST00000434546 243 ntBASIC4.04□□□□□ -1.76
CLIP3Q96DZ5 OR4C10P-201ENST00000434991 931 ntBASIC4.04□□□□□ -1.76
CLIP3Q96DZ5 Z82210.1-201ENST00000440037 231 ntBASIC4.04□□□□□ -1.76
CLIP3Q96DZ5 AC091153.2-202ENST00000441700 384 ntTSL 3 BASIC4.04□□□□□ -1.76
CLIP3Q96DZ5 PIGFP3-201ENST00000441918 722 ntBASIC4.04□□□□□ -1.76
CLIP3Q96DZ5 AC104058.1-201ENST00000448028 297 ntBASIC4.04□□□□□ -1.76
CLIP3Q96DZ5 AL078587.1-201ENST00000448580 542 ntTSL 5 BASIC4.04□□□□□ -1.76
CLIP3Q96DZ5 CECR9-201ENST00000453421 199 ntBASIC4.04□□□□□ -1.76
CLIP3Q96DZ5 SNRPFP3-201ENST00000457792 225 ntBASIC4.04□□□□□ -1.76
CLIP3Q96DZ5 KC877373.1-201ENST00000479066 408 ntBASIC4.04□□□□□ -1.76
CLIP3Q96DZ5 PPIAP15-201ENST00000479662 484 ntBASIC4.04□□□□□ -1.76
CLIP3Q96DZ5 RPS29P19-201ENST00000479709 171 ntBASIC4.04□□□□□ -1.76
CLIP3Q96DZ5 LINC02377-201ENST00000500169 450 ntTSL 3 BASIC4.04□□□□□ -1.76
CLIP3Q96DZ5 AC093297.2-204ENST00000508945 295 ntTSL 3 BASIC4.04□□□□□ -1.76
CLIP3Q96DZ5 RPL39P5-202ENST00000512505 151 ntBASIC4.04□□□□□ -1.76
CLIP3Q96DZ5 APOOP4-201ENST00000513530 597 ntBASIC4.04□□□□□ -1.76
CLIP3Q96DZ5 RNU6-1213P-201ENST00000517075 94 ntBASIC4.04□□□□□ -1.76
CLIP3Q96DZ5 AC023866.1-201ENST00000518064 579 ntTSL 4 BASIC4.04□□□□□ -1.76
CLIP3Q96DZ5 AC068992.1-201ENST00000521411 543 ntTSL 5 BASIC4.04□□□□□ -1.76
CLIP3Q96DZ5 MTND4P7-201ENST00000523876 130 ntBASIC4.04□□□□□ -1.76
CLIP3Q96DZ5 CASP1P1-201ENST00000526345 212 ntBASIC4.04□□□□□ -1.76
CLIP3Q96DZ5 RANP3-201ENST00000530970 276 ntBASIC4.04□□□□□ -1.76
CLIP3Q96DZ5 AL161670.1-201ENST00000554348 137 ntBASIC4.04□□□□□ -1.76
CLIP3Q96DZ5 MIR3186-201ENST00000577404 85 ntBASIC4.04□□□□□ -1.76
CLIP3Q96DZ5 AC053481.4-201ENST00000583164 216 ntBASIC4.04□□□□□ -1.76
CLIP3Q96DZ5 AC023043.2-201ENST00000589678 1026 ntBASIC4.04□□□□□ -1.76
CLIP3Q96DZ5 AC244505.7-201ENST00000599675 272 ntBASIC4.04□□□□□ -1.76
CLIP3Q96DZ5 AC098826.3-201ENST00000603823 466 ntBASIC4.04□□□□□ -1.76
CLIP3Q96DZ5 AL157817.1-201ENST00000614264 790 ntBASIC4.04□□□□□ -1.76
CLIP3Q96DZ5 AC007485.1-201ENST00000616755 206 ntBASIC4.04□□□□□ -1.76
CLIP3Q96DZ5 MRPL42-206ENST00000549982 15582 ntAPPRIS P2 TSL 1 (best) BASIC4.04□□□□□ -1.76
CLIP3Q96DZ5 CENPJ-205ENST00000545981 4299 ntTSL 2 BASIC4.04□□□□□ -1.76
CLIP3Q96DZ5 EMSY-210ENST00000529032 6848 ntAPPRIS P3 TSL 1 (best) BASIC4.04□□□□□ -1.76
CLIP3Q96DZ5 NCAM2-201ENST00000284894 4699 ntAPPRIS ALT2 TSL 5 BASIC4.04□□□□□ -1.76
CLIP3Q96DZ5 PAPOLA-202ENST00000392990 2588 ntTSL 5 BASIC4.04□□□□□ -1.76
CLIP3Q96DZ5 KCNJ16-209ENST00000589377 3684 ntAPPRIS P1 TSL 5 BASIC4.03□□□□□ -1.76
CLIP3Q96DZ5 CASC1-205ENST00000545133 2146 ntAPPRIS ALT2 TSL 2 BASIC4.03□□□□□ -1.76
CLIP3Q96DZ5 SNORA63.7-201ENST00000365579 123 ntBASIC4.03□□□□□ -1.76
CLIP3Q96DZ5 C1orf100-202ENST00000366537 483 ntTSL 1 (best) BASIC4.03□□□□□ -1.76
CLIP3Q96DZ5 Y_RNA.527-201ENST00000384573 102 ntBASIC4.03□□□□□ -1.76
CLIP3Q96DZ5 Y_RNA.576-201ENST00000384781 102 ntBASIC4.03□□□□□ -1.76
CLIP3Q96DZ5 AC010163.2-201ENST00000416341 381 ntTSL 2 BASIC4.03□□□□□ -1.76
CLIP3Q96DZ5 CXorf51B-201ENST00000438525 436 ntAPPRIS P1 TSL 2 BASIC4.03□□□□□ -1.76
CLIP3Q96DZ5 IKZF2-209ENST00000442445 551 ntTSL 5 BASIC4.03□□□□□ -1.76
CLIP3Q96DZ5 HSFY6P-201ENST00000445573 403 ntBASIC4.03□□□□□ -1.76
CLIP3Q96DZ5 AL357873.1-201ENST00000449215 282 ntTSL 3 BASIC4.03□□□□□ -1.76
CLIP3Q96DZ5 RNA5SP310-201ENST00000459084 116 ntBASIC4.03□□□□□ -1.76
CLIP3Q96DZ5 RN7SL330P-201ENST00000469709 307 ntBASIC4.03□□□□□ -1.76
CLIP3Q96DZ5 AL049830.2-201ENST00000480072 201 ntBASIC4.03□□□□□ -1.76
CLIP3Q96DZ5 RPL21P93-201ENST00000480465 489 ntBASIC4.03□□□□□ -1.76
CLIP3Q96DZ5 AF213884.1-201ENST00000488102 463 ntBASIC4.03□□□□□ -1.76
CLIP3Q96DZ5 RPS27P27-201ENST00000498779 255 ntBASIC4.03□□□□□ -1.76
Retrieved 100 of 98,524 protein–RNA pairs in 92.5 ms