Protein–RNA interactions for Protein: Q53GS9

USP39, U4/U6.U5 tri-snRNP-associated protein 2, humanhuman

Known RBP Predictions only

Length 565 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP39Q53GS9 CLUL1-208ENST00000581619 2449 ntTSL 2 BASIC4.03□□□□□ -1.76
USP39Q53GS9 THEMIS-205ENST00000626040 3179 ntAPPRIS ALT2 TSL 2 BASIC4.03□□□□□ -1.76
USP39Q53GS9 UBA6-201ENST00000322244 9564 ntAPPRIS P1 TSL 1 (best) BASIC4.03□□□□□ -1.76
USP39Q53GS9 RNU6-562P-201ENST00000362731 107 ntBASIC4.03□□□□□ -1.76
USP39Q53GS9 SNORD35B-201ENST00000363660 87 ntBASIC4.03□□□□□ -1.76
USP39Q53GS9 KRTAP19-8-201ENST00000382822 318 ntAPPRIS P1 BASIC4.03□□□□□ -1.76
USP39Q53GS9 TRAJ32-201ENST00000390505 66 ntAPPRIS P1 BASIC4.03□□□□□ -1.76
USP39Q53GS9 MIR1183-201ENST00000408856 89 ntBASIC4.03□□□□□ -1.76
USP39Q53GS9 PSMA2P3-201ENST00000429685 675 ntBASIC4.03□□□□□ -1.76
USP39Q53GS9 TBCAP1-201ENST00000436520 327 ntBASIC4.03□□□□□ -1.76
USP39Q53GS9 AC127537.2-201ENST00000439258 465 ntBASIC4.03□□□□□ -1.76
USP39Q53GS9 AC005094.1-201ENST00000440420 368 ntBASIC4.03□□□□□ -1.76
USP39Q53GS9 RPS3AP12-201ENST00000443616 753 ntBASIC4.03□□□□□ -1.76
USP39Q53GS9 BX276092.4-201ENST00000452056 248 ntBASIC4.03□□□□□ -1.76
USP39Q53GS9 AC078918.1-201ENST00000498515 228 ntBASIC4.03□□□□□ -1.76
USP39Q53GS9 LINC00492-201ENST00000504436 593 ntTSL 3 BASIC4.03□□□□□ -1.76
USP39Q53GS9 AC005921.1-201ENST00000510589 286 ntBASIC4.03□□□□□ -1.76
USP39Q53GS9 RNU6-120P-201ENST00000516077 103 ntBASIC4.03□□□□□ -1.76
USP39Q53GS9 RNU1-95P-201ENST00000516357 160 ntBASIC4.03□□□□□ -1.76
USP39Q53GS9 RNU1-128P-201ENST00000516704 160 ntBASIC4.03□□□□□ -1.76
USP39Q53GS9 Y_RNA.721-201ENST00000517207 102 ntBASIC4.03□□□□□ -1.76
USP39Q53GS9 AP005357.1-201ENST00000520749 476 ntTSL 3 BASIC4.03□□□□□ -1.76
USP39Q53GS9 AC023442.1-201ENST00000531247 422 ntBASIC4.03□□□□□ -1.76
USP39Q53GS9 LINC02442-202ENST00000540761 382 ntTSL 2 BASIC4.03□□□□□ -1.76
USP39Q53GS9 AC074052.2-201ENST00000562516 214 ntTSL 3 BASIC4.03□□□□□ -1.76
USP39Q53GS9 AC009137.1-201ENST00000562790 260 ntTSL 3 BASIC4.03□□□□□ -1.76
USP39Q53GS9 AC018554.1-202ENST00000565133 444 ntTSL 3 BASIC4.03□□□□□ -1.76
USP39Q53GS9 AC092138.1-201ENST00000568659 472 ntTSL 2 BASIC4.03□□□□□ -1.76
USP39Q53GS9 AC090409.2-202ENST00000585706 604 ntTSL 5 BASIC4.03□□□□□ -1.76
USP39Q53GS9 AL451044.1-201ENST00000604867 238 ntBASIC4.03□□□□□ -1.76
USP39Q53GS9 ATP1B3P1-201ENST00000605365 821 ntBASIC4.03□□□□□ -1.76
USP39Q53GS9 AC018462.2-201ENST00000605375 395 ntBASIC4.03□□□□□ -1.76
USP39Q53GS9 AC005344.1-201ENST00000613391 459 ntBASIC4.03□□□□□ -1.76
USP39Q53GS9 U2.1-201ENST00000618978 145 ntBASIC4.03□□□□□ -1.76
USP39Q53GS9 AC009093.8-201ENST00000641769 292 ntBASIC4.03□□□□□ -1.76
USP39Q53GS9 EXOC5P1-201ENST00000510543 1969 ntBASIC4.03□□□□□ -1.76
USP39Q53GS9 SEL1L2-202ENST00000378072 1892 ntTSL 2 BASIC4.03□□□□□ -1.77
USP39Q53GS9 AC005592.1-201ENST00000566527 1640 ntBASIC4.03□□□□□ -1.77
USP39Q53GS9 ZNF962P-201ENST00000443465 3140 ntBASIC4.02□□□□□ -1.77
USP39Q53GS9 OR10J1-203ENST00000642080 3503 ntAPPRIS P1 BASIC4.02□□□□□ -1.77
USP39Q53GS9 PLCB4-206ENST00000414679 3947 ntAPPRIS ALT1 TSL 5 BASIC4.02□□□□□ -1.77
USP39Q53GS9 MCF2-203ENST00000370576 3688 ntAPPRIS P3 TSL 1 (best) BASIC4.02□□□□□ -1.77
USP39Q53GS9 CFAP44-202ENST00000393845 7069 ntAPPRIS ALT2 TSL 5 BASIC4.02□□□□□ -1.77
USP39Q53GS9 FRYL-205ENST00000503238 11103 ntAPPRIS P1 TSL 5 BASIC4.02□□□□□ -1.77
USP39Q53GS9 DEFB108B-201ENST00000328698 222 ntAPPRIS P1 TSL 1 (best) BASIC4.02□□□□□ -1.77
USP39Q53GS9 RNU6-490P-201ENST00000362985 107 ntBASIC4.02□□□□□ -1.77
USP39Q53GS9 MS4A4E-202ENST00000398986 522 ntAPPRIS P1 TSL 5 BASIC4.02□□□□□ -1.77
USP39Q53GS9 NDUFS5P1-201ENST00000405668 289 ntBASIC4.02□□□□□ -1.77
USP39Q53GS9 Y_RNA.594-201ENST00000410373 140 ntBASIC4.02□□□□□ -1.77
USP39Q53GS9 RNU6-1050P-201ENST00000410388 107 ntBASIC4.02□□□□□ -1.77
USP39Q53GS9 RNU2-15P-201ENST00000410692 191 ntBASIC4.02□□□□□ -1.77
USP39Q53GS9 RNU4-61P-201ENST00000411243 107 ntBASIC4.02□□□□□ -1.77
USP39Q53GS9 RNA5SP107-201ENST00000411358 122 ntBASIC4.02□□□□□ -1.77
USP39Q53GS9 U51244.1-201ENST00000423120 374 ntTSL 3 BASIC4.02□□□□□ -1.77
USP39Q53GS9 AL590632.1-201ENST00000424289 371 ntBASIC4.02□□□□□ -1.77
USP39Q53GS9 RPL7P37-201ENST00000425095 738 ntBASIC4.02□□□□□ -1.77
USP39Q53GS9 AL160411.1-201ENST00000429853 400 ntTSL 2 BASIC4.02□□□□□ -1.77
USP39Q53GS9 RPL21P112-201ENST00000434403 463 ntBASIC4.02□□□□□ -1.77
USP39Q53GS9 RPL21P8-201ENST00000465083 535 ntBASIC4.02□□□□□ -1.77
USP39Q53GS9 AC106892.1-201ENST00000491608 406 ntTSL 3 BASIC4.02□□□□□ -1.77
USP39Q53GS9 RPL22P13-201ENST00000493291 347 ntBASIC4.02□□□□□ -1.77
USP39Q53GS9 COX7A2P2-201ENST00000505291 250 ntBASIC4.02□□□□□ -1.77
USP39Q53GS9 MFAP3L-206ENST00000506110 548 ntTSL 3 BASIC4.02□□□□□ -1.77
USP39Q53GS9 RBBP4P6-201ENST00000508098 202 ntBASIC4.02□□□□□ -1.77
USP39Q53GS9 NDUFB4P9-201ENST00000511646 388 ntBASIC4.02□□□□□ -1.77
USP39Q53GS9 RNU4ATAC7P-201ENST00000516280 125 ntBASIC4.02□□□□□ -1.77
USP39Q53GS9 RNU2-58P-201ENST00000516403 183 ntBASIC4.02□□□□□ -1.77
USP39Q53GS9 RNU6-1069P-201ENST00000516612 133 ntBASIC4.02□□□□□ -1.77
USP39Q53GS9 Y_RNA.708-201ENST00000516950 96 ntBASIC4.02□□□□□ -1.77
USP39Q53GS9 RNU6-1092P-201ENST00000516955 87 ntBASIC4.02□□□□□ -1.77
USP39Q53GS9 RNU4ATAC10P-201ENST00000516967 122 ntBASIC4.02□□□□□ -1.77
USP39Q53GS9 RNU6-685P-201ENST00000517088 95 ntBASIC4.02□□□□□ -1.77
USP39Q53GS9 PPP1R12A-204ENST00000546369 2977 ntTSL 2 BASIC4.02□□□□□ -1.77
USP39Q53GS9 AL160314.2-204ENST00000554730 380 ntTSL 5 BASIC4.02□□□□□ -1.77
USP39Q53GS9 RPL23AP87-202ENST00000573039 466 ntBASIC4.02□□□□□ -1.77
USP39Q53GS9 MIR5692C1-201ENST00000585309 91 ntBASIC4.02□□□□□ -1.77
USP39Q53GS9 AC008521.1-201ENST00000587471 187 ntBASIC4.02□□□□□ -1.77
USP39Q53GS9 AC078938.1-201ENST00000620993 318 ntBASIC4.02□□□□□ -1.77
USP39Q53GS9 CCDC14-217ENST00000485727 7917 ntAPPRIS ALT2 TSL 1 (best) BASIC4.02□□□□□ -1.77
USP39Q53GS9 STAU2-225ENST00000523558 1603 ntTSL 2 BASIC4.02□□□□□ -1.77
USP39Q53GS9 PTAR1-202ENST00000377200 9876 ntTSL 1 (best) BASIC4.02□□□□□ -1.77
USP39Q53GS9 PHTF2-201ENST00000248550 4778 ntTSL 1 (best) BASIC4.02□□□□□ -1.77
USP39Q53GS9 CNOT10-206ENST00000454516 2760 ntTSL 2 BASIC4.02□□□□□ -1.77
USP39Q53GS9 AC093274.1-201ENST00000503488 5454 ntTSL 5 BASIC4.01□□□□□ -1.77
USP39Q53GS9 MTND5P27-201ENST00000428871 1720 ntBASIC4.01□□□□□ -1.77
USP39Q53GS9 AC032011.1-201ENST00000611703 1549 ntBASIC4.01□□□□□ -1.77
USP39Q53GS9 MAPK10-372ENST00000641954 3413 ntBASIC4.01□□□□□ -1.77
USP39Q53GS9 ISPD-AS1-202ENST00000438573 2252 ntTSL 1 (best) BASIC4.01□□□□□ -1.77
USP39Q53GS9 SETDB2-202ENST00000317257 5619 ntAPPRIS ALT2 TSL 1 (best) BASIC4.01□□□□□ -1.77
USP39Q53GS9 SAGE4P-201ENST00000442271 3381 ntBASIC4.01□□□□□ -1.77
USP39Q53GS9 AL161668.1-201ENST00000320322 358 ntTSL 1 (best) BASIC4.01□□□□□ -1.77
USP39Q53GS9 OR2M2-201ENST00000359682 1044 ntAPPRIS P1 BASIC4.01□□□□□ -1.77
USP39Q53GS9 RNU6-99P-201ENST00000364721 107 ntBASIC4.01□□□□□ -1.77
USP39Q53GS9 RNU1-115P-201ENST00000365329 160 ntBASIC4.01□□□□□ -1.77
USP39Q53GS9 MIR483-201ENST00000385070 76 ntBASIC4.01□□□□□ -1.77
USP39Q53GS9 TRDJ1-201ENST00000390473 51 ntAPPRIS P1 BASIC4.01□□□□□ -1.77
USP39Q53GS9 RNA5SP306-201ENST00000411087 107 ntBASIC4.01□□□□□ -1.77
USP39Q53GS9 LINC00894-201ENST00000413076 403 ntTSL 3 BASIC4.01□□□□□ -1.77
USP39Q53GS9 LINC01817-201ENST00000429317 564 ntTSL 4 BASIC4.01□□□□□ -1.77
USP39Q53GS9 AC091286.1-201ENST00000431233 461 ntBASIC4.01□□□□□ -1.77
Retrieved 100 of 98,524 protein–RNA pairs in 105 ms