Protein–RNA interactions for Protein: P98160

HSPG2, Basement membrane-specific heparan sulfate proteoglycan core protein, humanhuman

Predictions only

Length 4,391 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HSPG2P98160 AC004241.3-201ENST00000611728 517 ntBASIC0.37□□□□□ -2.35
HSPG2P98160 AL773524.1-201ENST00000614065 229 ntBASIC0.37□□□□□ -2.35
HSPG2P98160 AC006001.4-201ENST00000622243 395 ntBASIC0.37□□□□□ -2.35
HSPG2P98160 AC083865.1-201ENST00000636634 831 ntBASIC0.37□□□□□ -2.35
HSPG2P98160 AC012361.1-201ENST00000447260 1498 ntTSL 1 (best) BASIC0.37□□□□□ -2.35
HSPG2P98160 TMEM167AP1-201ENST00000423409 219 ntBASIC0.36□□□□□ -2.35
HSPG2P98160 TPTE2P6-202ENST00000445572 1007 ntBASIC0.36□□□□□ -2.35
HSPG2P98160 RPL31P60-201ENST00000478450 367 ntBASIC0.36□□□□□ -2.35
HSPG2P98160 SOX2-OT-216ENST00000497122 578 ntTSL 4 BASIC0.36□□□□□ -2.35
HSPG2P98160 AC027018.1-202ENST00000534723 383 ntTSL 3 BASIC0.36□□□□□ -2.35
HSPG2P98160 LINC00557-201ENST00000563184 1279 ntBASIC0.36□□□□□ -2.35
HSPG2P98160 RPL21P136-201ENST00000605378 396 ntBASIC0.36□□□□□ -2.35
HSPG2P98160 AC116563.2-201ENST00000624751 535 ntBASIC0.36□□□□□ -2.35
HSPG2P98160 MIR4496-201ENST00000635896 61 ntBASIC0.36□□□□□ -2.35
HSPG2P98160 SCOC-202ENST00000394201 1795 ntAPPRIS ALT1 TSL 1 (best) BASIC0.36□□□□□ -2.35
HSPG2P98160 Y_RNA.457-201ENST00000384237 111 ntBASIC0.36□□□□□ -2.35
HSPG2P98160 RPS4XP3-201ENST00000398541 413 ntBASIC0.36□□□□□ -2.35
HSPG2P98160 AL034374.1-201ENST00000406329 351 ntBASIC0.36□□□□□ -2.35
HSPG2P98160 AL365184.1-201ENST00000413801 572 ntTSL 3 BASIC0.36□□□□□ -2.35
HSPG2P98160 AF127577.5-201ENST00000449746 446 ntTSL 3 BASIC0.36□□□□□ -2.35
HSPG2P98160 AC104663.1-201ENST00000508555 557 ntTSL 2 BASIC0.36□□□□□ -2.35
HSPG2P98160 C5orf46-203ENST00000515291 573 ntAPPRIS ALT1 TSL 1 (best) BASIC0.36□□□□□ -2.35
HSPG2P98160 RNU6-1073P-201ENST00000517182 106 ntBASIC0.36□□□□□ -2.35
HSPG2P98160 AP005902.1-201ENST00000521358 186 ntBASIC0.36□□□□□ -2.35
HSPG2P98160 AC007347.1-201ENST00000563879 281 ntTSL 3 BASIC0.36□□□□□ -2.35
HSPG2P98160 AC113194.1-201ENST00000606037 500 ntBASIC0.36□□□□□ -2.35
HSPG2P98160 MIR601-201ENST00000385256 79 ntBASIC0.36□□□□□ -2.35
HSPG2P98160 AC092628.1-201ENST00000436250 252 ntBASIC0.36□□□□□ -2.35
HSPG2P98160 AL050349.1-201ENST00000441029 401 ntTSL 2 BASIC0.36□□□□□ -2.35
HSPG2P98160 C1DP3-201ENST00000455013 423 ntBASIC0.36□□□□□ -2.35
HSPG2P98160 RPL9P9-202ENST00000466501 579 ntBASIC0.36□□□□□ -2.35
HSPG2P98160 NDUFB4P2-201ENST00000509515 391 ntBASIC0.36□□□□□ -2.35
HSPG2P98160 SCOC-AS1-203ENST00000609616 405 ntTSL 3 BASIC0.36□□□□□ -2.35
HSPG2P98160 ZNF33BP1-201ENST00000452497 1834 ntBASIC0.36□□□□□ -2.35
HSPG2P98160 AC087359.1-201ENST00000508335 1740 ntBASIC0.36□□□□□ -2.35
HSPG2P98160 AC096656.1-201ENST00000623826 1364 ntBASIC0.36□□□□□ -2.35
HSPG2P98160 AC104653.1-201ENST00000420579 578 ntTSL 2 BASIC0.36□□□□□ -2.35
HSPG2P98160 EIF4EP4-201ENST00000424916 578 ntBASIC0.36□□□□□ -2.35
HSPG2P98160 CPHL1P-203ENST00000471823 523 ntTSL 5 BASIC0.36□□□□□ -2.35
HSPG2P98160 AC091435.1-201ENST00000505442 584 ntBASIC0.36□□□□□ -2.35
HSPG2P98160 MTATP6P22-201ENST00000507369 598 ntBASIC0.36□□□□□ -2.35
HSPG2P98160 AP006587.4-201ENST00000526053 529 ntBASIC0.36□□□□□ -2.35
HSPG2P98160 AC023050.2-201ENST00000544968 387 ntBASIC0.36□□□□□ -2.35
HSPG2P98160 AC090616.3-201ENST00000582184 217 ntBASIC0.36□□□□□ -2.35
HSPG2P98160 AP005230.1-201ENST00000585072 675 ntTSL 5 BASIC0.36□□□□□ -2.35
HSPG2P98160 AC243960.4-201ENST00000600532 288 ntBASIC0.36□□□□□ -2.35
HSPG2P98160 AL139344.1-201ENST00000605228 195 ntBASIC0.36□□□□□ -2.35
HSPG2P98160 SFR1P1-201ENST00000403720 688 ntBASIC0.35□□□□□ -2.35
HSPG2P98160 AL356131.1-201ENST00000405826 414 ntBASIC0.35□□□□□ -2.35
HSPG2P98160 RNU6ATAC11P-201ENST00000408541 125 ntBASIC0.35□□□□□ -2.35
HSPG2P98160 AC016751.2-201ENST00000453206 280 ntTSL 5 BASIC0.35□□□□□ -2.35
HSPG2P98160 SKP1-203ENST00000517625 876 ntAPPRIS P4 TSL 3 BASIC0.35□□□□□ -2.35
HSPG2P98160 IGLVI-20-201ENST00000519296 130 ntBASIC0.35□□□□□ -2.35
HSPG2P98160 AC087272.1-201ENST00000523624 533 ntBASIC0.35□□□□□ -2.35
HSPG2P98160 AC009509.2-201ENST00000538640 429 ntTSL 2 BASIC0.35□□□□□ -2.35
HSPG2P98160 AC104819.3-201ENST00000603264 540 ntTSL 4 BASIC0.35□□□□□ -2.35
HSPG2P98160 AC013244.3-201ENST00000605614 388 ntBASIC0.35□□□□□ -2.35
HSPG2P98160 SNORD14A-201ENST00000606526 91 ntBASIC0.35□□□□□ -2.35
HSPG2P98160 AC020923.1-201ENST00000624021 917 ntBASIC0.35□□□□□ -2.35
HSPG2P98160 SNORA3A-201ENST00000364113 130 ntBASIC0.35□□□□□ -2.35
HSPG2P98160 BX248415.1-201ENST00000367421 1043 ntAPPRIS P1 TSL 1 (best) BASIC0.35□□□□□ -2.35
HSPG2P98160 AL031577.2-201ENST00000404133 280 ntBASIC0.35□□□□□ -2.35
HSPG2P98160 AC009296.1-201ENST00000443146 155 ntBASIC0.35□□□□□ -2.35
HSPG2P98160 AC079448.1-201ENST00000449377 373 ntBASIC0.35□□□□□ -2.35
HSPG2P98160 AC118282.2-201ENST00000508739 374 ntBASIC0.35□□□□□ -2.35
HSPG2P98160 AC004817.2-201ENST00000561794 651 ntBASIC0.35□□□□□ -2.35
HSPG2P98160 AC097376.2-202ENST00000608345 433 ntTSL 3 BASIC0.35□□□□□ -2.35
HSPG2P98160 PLSCR2-206ENST00000610787 1001 ntAPPRIS P1 TSL 1 (best) BASIC0.35□□□□□ -2.35
HSPG2P98160 RNU6-1331P-201ENST00000363658 106 ntBASIC0.35□□□□□ -2.35
HSPG2P98160 AL353689.1-201ENST00000438895 199 ntBASIC0.35□□□□□ -2.35
HSPG2P98160 TRGVB-201ENST00000453257 471 ntBASIC0.35□□□□□ -2.35
HSPG2P98160 PRELID3BP1-201ENST00000457142 540 ntBASIC0.35□□□□□ -2.35
HSPG2P98160 SETP11-201ENST00000473027 690 ntBASIC0.35□□□□□ -2.35
HSPG2P98160 AL353811.1-202ENST00000602614 618 ntTSL 3 BASIC0.35□□□□□ -2.35
HSPG2P98160 AC068620.3-201ENST00000602749 560 ntBASIC0.35□□□□□ -2.35
HSPG2P98160 AC069304.3-201ENST00000603938 1084 ntBASIC0.35□□□□□ -2.35
HSPG2P98160 MIR6864-201ENST00000617935 70 ntBASIC0.35□□□□□ -2.35
HSPG2P98160 SNORA25.8-201ENST00000364831 128 ntBASIC0.34□□□□□ -2.35
HSPG2P98160 LINC01509-202ENST00000423523 408 ntTSL 3 BASIC0.34□□□□□ -2.35
HSPG2P98160 AC103851.1-201ENST00000506833 274 ntBASIC0.34□□□□□ -2.35
HSPG2P98160 RNU6-319P-201ENST00000516025 108 ntBASIC0.34□□□□□ -2.35
HSPG2P98160 MTND2P26-201ENST00000528255 1029 ntBASIC0.34□□□□□ -2.35
HSPG2P98160 AC074051.3-201ENST00000570238 358 ntBASIC0.34□□□□□ -2.35
HSPG2P98160 PCNAP1-202ENST00000595299 752 ntBASIC0.34□□□□□ -2.35
HSPG2P98160 AC021749.1-201ENST00000604322 607 ntBASIC0.34□□□□□ -2.35
HSPG2P98160 AC025594.3-201ENST00000613068 790 ntBASIC0.34□□□□□ -2.35
HSPG2P98160 MIR515-2-201ENST00000384883 83 ntBASIC0.34□□□□□ -2.35
HSPG2P98160 MIR515-1-201ENST00000384884 83 ntBASIC0.34□□□□□ -2.35
HSPG2P98160 SNORA81-201ENST00000408493 178 ntBASIC0.34□□□□□ -2.35
HSPG2P98160 LINC02559-201ENST00000420391 188 ntTSL 2 BASIC0.34□□□□□ -2.35
HSPG2P98160 AL161788.1-201ENST00000441805 169 ntBASIC0.34□□□□□ -2.35
HSPG2P98160 AL139147.1-201ENST00000502413 1156 ntTSL 2 BASIC0.34□□□□□ -2.35
HSPG2P98160 AC012557.2-201ENST00000605919 418 ntBASIC0.34□□□□□ -2.35
HSPG2P98160 AL592148.2-201ENST00000612210 372 ntBASIC0.34□□□□□ -2.35
HSPG2P98160 AL136313.1-201ENST00000624804 202 ntBASIC0.34□□□□□ -2.35
HSPG2P98160 Y_RNA.571-201ENST00000384753 98 ntBASIC0.34□□□□□ -2.36
HSPG2P98160 AL161935.3-201ENST00000433770 347 ntTSL 2 BASIC0.34□□□□□ -2.36
HSPG2P98160 ITGA9-AS1-208ENST00000449586 726 ntTSL 3 BASIC0.34□□□□□ -2.36
HSPG2P98160 snoU13.19-201ENST00000459148 104 ntBASIC0.34□□□□□ -2.36
HSPG2P98160 LRRTM2-203ENST00000521094 1182 ntTSL 1 (best) BASIC0.34□□□□□ -2.36
Retrieved 100 of 98,524 protein–RNA pairs in 102.5 ms