Protein–RNA interactions for Protein: P31249

HOXD3, Homeobox protein Hox-D3, humanhuman

Predicted RBP Predictions only

Length 432 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXD3P31249 AL513478.4-201ENST00000641636 310 ntBASIC3.05□□□□□ -1.92
HOXD3P31249 TUSC7-203ENST00000477539 2415 ntTSL 1 (best) BASIC3.05□□□□□ -1.92
HOXD3P31249 BIRC3-206ENST00000532808 4238 ntAPPRIS P1 TSL 5 BASIC3.05□□□□□ -1.92
HOXD3P31249 BLM-208ENST00000560509 3966 ntTSL 1 (best) BASIC3.05□□□□□ -1.92
HOXD3P31249 GPBP1-204ENST00000506184 2857 ntAPPRIS P3 TSL 1 (best) BASIC3.05□□□□□ -1.92
HOXD3P31249 OR10D3-203ENST00000641546 3566 ntAPPRIS P1 BASIC3.05□□□□□ -1.92
HOXD3P31249 MGA-202ENST00000545763 11413 ntAPPRIS ALT2 TSL 5 BASIC3.05□□□□□ -1.92
HOXD3P31249 CCSER2-201ENST00000224756 7664 ntAPPRIS P1 TSL 5 BASIC3.05□□□□□ -1.92
HOXD3P31249 WRN-201ENST00000298139 5215 ntAPPRIS P1 TSL 1 (best) BASIC3.04□□□□□ -1.92
HOXD3P31249 HSP90AA4P-202ENST00000506915 2228 ntBASIC3.04□□□□□ -1.92
HOXD3P31249 AL591441.1-201ENST00000618108 2247 ntTSL 2 BASIC3.04□□□□□ -1.92
HOXD3P31249 ERBIN-203ENST00000380938 4701 ntTSL 2 BASIC3.04□□□□□ -1.92
HOXD3P31249 PUS7L-207ENST00000551923 3313 ntAPPRIS P1 TSL 1 (best) BASIC3.04□□□□□ -1.92
HOXD3P31249 FBXL13-204ENST00000436908 2577 ntTSL 5 BASIC3.04□□□□□ -1.92
HOXD3P31249 RHOT1P2-201ENST00000366423 333 ntBASIC3.04□□□□□ -1.92
HOXD3P31249 RNU6-213P-201ENST00000384051 104 ntBASIC3.04□□□□□ -1.92
HOXD3P31249 RNU6-328P-201ENST00000390887 106 ntBASIC3.04□□□□□ -1.92
HOXD3P31249 AP000567.1-201ENST00000406413 156 ntBASIC3.04□□□□□ -1.92
HOXD3P31249 SNORA3C-201ENST00000408792 125 ntBASIC3.04□□□□□ -1.92
HOXD3P31249 RNA5SP129-201ENST00000410276 118 ntBASIC3.04□□□□□ -1.92
HOXD3P31249 RNA5SP104-201ENST00000410989 118 ntBASIC3.04□□□□□ -1.92
HOXD3P31249 RPL37P10-201ENST00000412884 288 ntBASIC3.04□□□□□ -1.92
HOXD3P31249 AL355989.1-202ENST00000419406 408 ntTSL 3 BASIC3.04□□□□□ -1.92
HOXD3P31249 SKA2P1-201ENST00000425592 390 ntBASIC3.04□□□□□ -1.92
HOXD3P31249 SAR1AP4-201ENST00000429225 591 ntBASIC3.04□□□□□ -1.92
HOXD3P31249 AC007919.1-201ENST00000429380 217 ntBASIC3.04□□□□□ -1.92
HOXD3P31249 AC093581.1-202ENST00000430890 391 ntTSL 2 BASIC3.04□□□□□ -1.92
HOXD3P31249 AC005534.2-201ENST00000431047 433 ntBASIC3.04□□□□□ -1.92
HOXD3P31249 AC073063.1-201ENST00000434352 607 ntBASIC3.04□□□□□ -1.92
HOXD3P31249 FABP5P14-201ENST00000437273 393 ntBASIC3.04□□□□□ -1.92
HOXD3P31249 LINC01710-201ENST00000446002 390 ntTSL 5 BASIC3.04□□□□□ -1.92
HOXD3P31249 RPL21P11-201ENST00000461458 483 ntBASIC3.04□□□□□ -1.92
HOXD3P31249 PTP4A2-203ENST00000470404 575 ntTSL 3 BASIC3.04□□□□□ -1.92
HOXD3P31249 AC022493.1-201ENST00000492984 337 ntBASIC3.04□□□□□ -1.92
HOXD3P31249 AC110767.1-201ENST00000508374 239 ntTSL 3 BASIC3.04□□□□□ -1.92
HOXD3P31249 AC008526.1-201ENST00000509149 338 ntBASIC3.04□□□□□ -1.92
HOXD3P31249 AC005741.1-201ENST00000511094 432 ntBASIC3.04□□□□□ -1.92
HOXD3P31249 RGS4-209ENST00000531057 544 ntTSL 4 BASIC3.04□□□□□ -1.92
HOXD3P31249 AC026894.1-202ENST00000533843 477 ntTSL 5 BASIC3.04□□□□□ -1.92
HOXD3P31249 APAF1-207ENST00000547743 651 ntTSL 3 BASIC3.04□□□□□ -1.92
HOXD3P31249 PCED1B-AS1-208ENST00000551898 359 ntTSL 3 BASIC3.04□□□□□ -1.92
HOXD3P31249 AF099810.1-201ENST00000554219 525 ntTSL 3 BASIC3.04□□□□□ -1.92
HOXD3P31249 GNRHR2P1-201ENST00000555315 631 ntBASIC3.04□□□□□ -1.92
HOXD3P31249 AC104002.1-201ENST00000557025 380 ntTSL 3 BASIC3.04□□□□□ -1.92
HOXD3P31249 AC020661.3-201ENST00000558101 414 ntTSL 3 BASIC3.04□□□□□ -1.92
HOXD3P31249 AC093515.1-201ENST00000567103 445 ntTSL 5 BASIC3.04□□□□□ -1.92
HOXD3P31249 AL139395.1-201ENST00000603662 160 ntBASIC3.04□□□□□ -1.92
HOXD3P31249 AC012468.1-201ENST00000604888 430 ntBASIC3.04□□□□□ -1.92
HOXD3P31249 AC084757.4-201ENST00000616350 526 ntBASIC3.04□□□□□ -1.92
HOXD3P31249 AC126177.8-201ENST00000618339 1015 ntBASIC3.04□□□□□ -1.92
HOXD3P31249 AC135584.1-201ENST00000624438 333 ntTSL 5 BASIC3.04□□□□□ -1.92
HOXD3P31249 AL158835.3-201ENST00000625908 565 ntTSL 5 BASIC3.04□□□□□ -1.92
HOXD3P31249 AC025164.2-202ENST00000499685 5699 ntTSL 3 BASIC3.04□□□□□ -1.92
HOXD3P31249 LINC01592-202ENST00000518540 2367 ntTSL 2 BASIC3.04□□□□□ -1.92
HOXD3P31249 SLCO1B1-201ENST00000256958 2229 ntAPPRIS P1 TSL 1 (best) BASIC3.04□□□□□ -1.92
HOXD3P31249 FLG-AS1-205ENST00000445097 2857 ntTSL 1 (best) BASIC3.03□□□□□ -1.92
HOXD3P31249 NEB-204ENST00000409198 20637 ntAPPRIS P3 TSL 5 BASIC3.03□□□□□ -1.92
HOXD3P31249 GABRG2-208ENST00000638552 3710 ntTSL 5 BASIC3.03□□□□□ -1.92
HOXD3P31249 ZBTB20-201ENST00000357258 27125 ntAPPRIS P1 TSL 1 (best) BASIC3.03□□□□□ -1.92
HOXD3P31249 TRMT10A-203ENST00000394877 3516 ntAPPRIS P1 TSL 2 BASIC3.03□□□□□ -1.92
HOXD3P31249 DTWD2-201ENST00000304058 4365 ntTSL 1 (best) BASIC3.03□□□□□ -1.92
HOXD3P31249 AL672296.1-201ENST00000427780 2158 ntBASIC3.03□□□□□ -1.92
HOXD3P31249 FIGNL1-202ENST00000395556 3485 ntAPPRIS P1 TSL 2 BASIC3.03□□□□□ -1.92
HOXD3P31249 ZNF616-201ENST00000330123 2563 ntTSL 1 (best) BASIC3.03□□□□□ -1.92
HOXD3P31249 MIR369-201ENST00000362155 70 ntBASIC3.03□□□□□ -1.92
HOXD3P31249 RNA5SP97-201ENST00000365006 84 ntBASIC3.03□□□□□ -1.92
HOXD3P31249 TSACC-205ENST00000368255 751 ntAPPRIS P1 TSL 1 (best) BASIC3.03□□□□□ -1.92
HOXD3P31249 SNORA75B-201ENST00000384053 137 ntBASIC3.03□□□□□ -1.92
HOXD3P31249 Y_RNA.431-201ENST00000384086 102 ntBASIC3.03□□□□□ -1.92
HOXD3P31249 RNU6-43P-201ENST00000384302 107 ntBASIC3.03□□□□□ -1.92
HOXD3P31249 Y_RNA.473-201ENST00000384333 102 ntBASIC3.03□□□□□ -1.92
HOXD3P31249 MIR93-201ENST00000385024 80 ntBASIC3.03□□□□□ -1.92
HOXD3P31249 MIR1302-11-201ENST00000408051 138 ntBASIC3.03□□□□□ -1.92
HOXD3P31249 MIR1302-9-201ENST00000408365 138 ntBASIC3.03□□□□□ -1.92
HOXD3P31249 MIR1302-10-201ENST00000408734 138 ntBASIC3.03□□□□□ -1.92
HOXD3P31249 RN7SKP158-201ENST00000410453 326 ntBASIC3.03□□□□□ -1.92
HOXD3P31249 RPL7P37-201ENST00000425095 738 ntBASIC3.03□□□□□ -1.92
HOXD3P31249 RPL23AP83-201ENST00000434984 473 ntBASIC3.03□□□□□ -1.92
HOXD3P31249 MTCYBP6-201ENST00000441810 138 ntBASIC3.03□□□□□ -1.92
HOXD3P31249 NHS-AS1-201ENST00000452788 366 ntTSL 3 BASIC3.03□□□□□ -1.92
HOXD3P31249 Y_RNA.635-201ENST00000459041 101 ntBASIC3.03□□□□□ -1.92
HOXD3P31249 AC027575.1-201ENST00000481064 460 ntBASIC3.03□□□□□ -1.92
HOXD3P31249 RPS15AP34-201ENST00000487776 387 ntBASIC3.03□□□□□ -1.92
HOXD3P31249 AC121154.1-201ENST00000507299 430 ntTSL 3 BASIC3.03□□□□□ -1.92
HOXD3P31249 AC026726.1-201ENST00000512859 601 ntBASIC3.03□□□□□ -1.92
HOXD3P31249 RNU6-1213P-201ENST00000517075 94 ntBASIC3.03□□□□□ -1.92
HOXD3P31249 AC104211.1-202ENST00000521307 866 ntTSL 3 BASIC3.03□□□□□ -1.92
HOXD3P31249 AP003072.1-201ENST00000531740 145 ntBASIC3.03□□□□□ -1.92
HOXD3P31249 AP003174.2-201ENST00000544663 294 ntTSL 3 BASIC3.03□□□□□ -1.92
HOXD3P31249 AC025423.5-201ENST00000550230 219 ntBASIC3.03□□□□□ -1.92
HOXD3P31249 AL121821.2-201ENST00000556081 394 ntBASIC3.03□□□□□ -1.92
HOXD3P31249 AC013565.1-201ENST00000565938 597 ntTSL 2 BASIC3.03□□□□□ -1.92
HOXD3P31249 AC093249.1-201ENST00000567049 203 ntBASIC3.03□□□□□ -1.92
HOXD3P31249 MIR3921-201ENST00000577308 85 ntBASIC3.03□□□□□ -1.92
HOXD3P31249 LINC01928-201ENST00000591029 504 ntTSL 3 BASIC3.03□□□□□ -1.92
HOXD3P31249 AC003973.1-201ENST00000600071 546 ntTSL 4 BASIC3.03□□□□□ -1.92
HOXD3P31249 MIR1302-2-201ENST00000607096 138 ntBASIC3.03□□□□□ -1.92
HOXD3P31249 AP002826.1-201ENST00000608835 315 ntBASIC3.03□□□□□ -1.92
HOXD3P31249 NRDE2-210ENST00000628832 132 ntTSL 5 BASIC3.03□□□□□ -1.92
HOXD3P31249 AL034408.1-202ENST00000636088 415 ntBASIC3.03□□□□□ -1.92
Retrieved 100 of 98,524 protein–RNA pairs in 124.7 ms