Protein–RNA interactions for Protein: P28356

HOXD9, Homeobox protein Hox-D9, humanhuman

Predicted RBP Predictions only

Length 352 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXD9P28356 API5P2-201ENST00000397055 1498 ntBASIC3.48□□□□□ -1.85
HOXD9P28356 AC116096.1-201ENST00000566804 2314 ntBASIC3.48□□□□□ -1.85
HOXD9P28356 SGO1-AS1-203ENST00000455626 2041 ntTSL 1 (best) BASIC3.48□□□□□ -1.85
HOXD9P28356 IBTK-209ENST00000510291 4109 ntTSL 1 (best) BASIC3.48□□□□□ -1.85
HOXD9P28356 Y_RNA.138-201ENST00000363462 102 ntBASIC3.48□□□□□ -1.85
HOXD9P28356 Y_RNA.378-201ENST00000365652 113 ntBASIC3.48□□□□□ -1.85
HOXD9P28356 FAM206A-202ENST00000374624 499 ntTSL 3 BASIC3.48□□□□□ -1.85
HOXD9P28356 RNU6-1013P-201ENST00000384180 107 ntBASIC3.48□□□□□ -1.85
HOXD9P28356 AL592114.1-201ENST00000403842 483 ntBASIC3.48□□□□□ -1.85
HOXD9P28356 RNU4-46P-201ENST00000410818 138 ntBASIC3.48□□□□□ -1.85
HOXD9P28356 Z99755.1-201ENST00000414048 380 ntBASIC3.48□□□□□ -1.85
HOXD9P28356 UBE2FP1-201ENST00000416536 447 ntBASIC3.48□□□□□ -1.85
HOXD9P28356 AC106873.1-201ENST00000420664 459 ntTSL 3 BASIC3.48□□□□□ -1.85
HOXD9P28356 AL353729.1-201ENST00000425044 720 ntBASIC3.48□□□□□ -1.85
HOXD9P28356 RPL7P46-201ENST00000425129 740 ntBASIC3.48□□□□□ -1.85
HOXD9P28356 AL136234.1-201ENST00000437080 349 ntTSL 2 BASIC3.48□□□□□ -1.85
HOXD9P28356 MTCO3P45-201ENST00000443036 613 ntBASIC3.48□□□□□ -1.85
HOXD9P28356 PRPS1P1-201ENST00000445305 876 ntBASIC3.48□□□□□ -1.85
HOXD9P28356 SFTA1P-203ENST00000446372 693 ntTSL 1 (best) BASIC3.48□□□□□ -1.85
HOXD9P28356 AC234775.1-201ENST00000454247 670 ntBASIC3.48□□□□□ -1.85
HOXD9P28356 SIDT1-AS1-201ENST00000462180 465 ntTSL 3 BASIC3.48□□□□□ -1.85
HOXD9P28356 AC096576.1-201ENST00000489014 359 ntBASIC3.48□□□□□ -1.85
HOXD9P28356 CCDC34P1-201ENST00000507441 517 ntBASIC3.48□□□□□ -1.85
HOXD9P28356 NDUFB4P9-201ENST00000511646 388 ntBASIC3.48□□□□□ -1.85
HOXD9P28356 AC010451.3-201ENST00000511721 444 ntTSL 3 BASIC3.48□□□□□ -1.85
HOXD9P28356 GYPA-208ENST00000512064 441 ntTSL 1 (best) BASIC3.48□□□□□ -1.85
HOXD9P28356 MIR2114-201ENST00000516645 80 ntBASIC3.48□□□□□ -1.85
HOXD9P28356 AL160262.1-201ENST00000522264 254 ntTSL 3 BASIC3.48□□□□□ -1.85
HOXD9P28356 AP001804.3-201ENST00000525146 880 ntBASIC3.48□□□□□ -1.85
HOXD9P28356 AP005597.4-201ENST00000526762 229 ntBASIC3.48□□□□□ -1.85
HOXD9P28356 AL121821.2-201ENST00000556081 394 ntBASIC3.48□□□□□ -1.85
HOXD9P28356 FAM60BP-201ENST00000578364 658 ntBASIC3.48□□□□□ -1.85
HOXD9P28356 AC016866.2-201ENST00000585251 502 ntTSL 2 BASIC3.48□□□□□ -1.85
HOXD9P28356 POLR3GP2-201ENST00000588366 668 ntBASIC3.48□□□□□ -1.85
HOXD9P28356 AC104534.1-201ENST00000594558 566 ntTSL 4 BASIC3.48□□□□□ -1.85
HOXD9P28356 AC098617.1-215ENST00000594798 1152 ntTSL 5 BASIC3.48□□□□□ -1.85
HOXD9P28356 BNIP3P25-201ENST00000596023 559 ntBASIC3.48□□□□□ -1.85
HOXD9P28356 AL355376.2-201ENST00000603866 267 ntTSL 5 BASIC3.48□□□□□ -1.85
HOXD9P28356 AC103710.3-201ENST00000608157 948 ntBASIC3.48□□□□□ -1.85
HOXD9P28356 AC092807.2-201ENST00000609367 243 ntBASIC3.48□□□□□ -1.85
HOXD9P28356 AL365204.3-201ENST00000612448 685 ntBASIC3.48□□□□□ -1.85
HOXD9P28356 LINC00907-209ENST00000593234 3376 ntTSL 1 (best) BASIC3.48□□□□□ -1.85
HOXD9P28356 PSG8-202ENST00000401467 1686 ntTSL 5 BASIC3.48□□□□□ -1.85
HOXD9P28356 ABCA5-208ENST00000588877 6525 ntAPPRIS P1 TSL 1 (best) BASIC3.48□□□□□ -1.85
HOXD9P28356 EMSY-210ENST00000529032 6848 ntAPPRIS P3 TSL 1 (best) BASIC3.48□□□□□ -1.85
HOXD9P28356 ZNF736P3Y-201ENST00000428264 1465 ntBASIC3.47□□□□□ -1.85
HOXD9P28356 LIG4-205ENST00000614526 3884 ntTSL 2 BASIC3.47□□□□□ -1.85
HOXD9P28356 ATP13A3-203ENST00000439040 7720 ntAPPRIS P1 TSL 5 BASIC3.47□□□□□ -1.85
HOXD9P28356 AL513302.2-201ENST00000562313 1842 ntBASIC3.47□□□□□ -1.85
HOXD9P28356 ATXN3L-201ENST00000380622 2164 ntAPPRIS P1 BASIC3.47□□□□□ -1.85
HOXD9P28356 RNU6-1155P-201ENST00000363554 107 ntBASIC3.47□□□□□ -1.85
HOXD9P28356 Y_RNA.339-201ENST00000365325 102 ntBASIC3.47□□□□□ -1.85
HOXD9P28356 MIR135A2-201ENST00000384854 100 ntBASIC3.47□□□□□ -1.85
HOXD9P28356 MIR491-201ENST00000384877 84 ntBASIC3.47□□□□□ -1.85
HOXD9P28356 AL592435.1-201ENST00000416401 469 ntTSL 3 BASIC3.47□□□□□ -1.85
HOXD9P28356 AC073323.1-201ENST00000419832 451 ntTSL 2 BASIC3.47□□□□□ -1.85
HOXD9P28356 RAC1P6-201ENST00000423911 575 ntBASIC3.47□□□□□ -1.85
HOXD9P28356 CALM2P2-201ENST00000428512 440 ntBASIC3.47□□□□□ -1.85
HOXD9P28356 NCOA7-AS1-201ENST00000429007 501 ntTSL 3 BASIC3.47□□□□□ -1.85
HOXD9P28356 AC008481.1-201ENST00000463278 396 ntBASIC3.47□□□□□ -1.85
HOXD9P28356 SNRPGP3-201ENST00000469405 227 ntBASIC3.47□□□□□ -1.85
HOXD9P28356 AC106892.1-201ENST00000491608 406 ntTSL 3 BASIC3.47□□□□□ -1.85
HOXD9P28356 HMGB3P15-201ENST00000507326 574 ntBASIC3.47□□□□□ -1.85
HOXD9P28356 AC104806.1-201ENST00000508720 308 ntBASIC3.47□□□□□ -1.85
HOXD9P28356 LINC02220-201ENST00000510065 270 ntTSL 5 BASIC3.47□□□□□ -1.85
HOXD9P28356 AC091906.1-201ENST00000511310 391 ntTSL 2 BASIC3.47□□□□□ -1.85
HOXD9P28356 LINC02374-202ENST00000515222 578 ntTSL 4 BASIC3.47□□□□□ -1.85
HOXD9P28356 SNORA70.19-201ENST00000516717 90 ntBASIC3.47□□□□□ -1.85
HOXD9P28356 RNU6-685P-201ENST00000517088 95 ntBASIC3.47□□□□□ -1.85
HOXD9P28356 SNORA25.17-201ENST00000517184 124 ntBASIC3.47□□□□□ -1.85
HOXD9P28356 SNORA70.24-201ENST00000517233 118 ntBASIC3.47□□□□□ -1.85
HOXD9P28356 SNRPGP16-201ENST00000533275 226 ntBASIC3.47□□□□□ -1.85
HOXD9P28356 SNHG1-219ENST00000542112 780 ntTSL 3 BASIC3.47□□□□□ -1.85
HOXD9P28356 AC023824.4-201ENST00000562572 476 ntTSL 3 BASIC3.47□□□□□ -1.85
HOXD9P28356 AC098848.1-201ENST00000588466 567 ntTSL 4 BASIC3.47□□□□□ -1.85
HOXD9P28356 AL034351.1-201ENST00000605288 668 ntBASIC3.47□□□□□ -1.85
HOXD9P28356 CTHRC1P1-201ENST00000605383 469 ntBASIC3.47□□□□□ -1.85
HOXD9P28356 HTN1-205ENST00000610341 536 ntAPPRIS P1 TSL 1 (best) BASIC3.47□□□□□ -1.85
HOXD9P28356 AL355810.1-201ENST00000614629 552 ntBASIC3.47□□□□□ -1.85
HOXD9P28356 uc_338.15-201ENST00000615470 191 ntBASIC3.47□□□□□ -1.85
HOXD9P28356 MIR7112-201ENST00000616126 65 ntBASIC3.47□□□□□ -1.85
HOXD9P28356 SMAD5-AS1_2.1-201ENST00000617906 131 ntBASIC3.47□□□□□ -1.85
HOXD9P28356 WFDC11-203ENST00000618797 561 ntAPPRIS P1 TSL 5 BASIC3.47□□□□□ -1.85
HOXD9P28356 MIR3651-201ENST00000630427 90 ntBASIC3.47□□□□□ -1.85
HOXD9P28356 TPTE2P4-201ENST00000258589 1605 ntBASIC3.47□□□□□ -1.85
HOXD9P28356 DCUN1D1-208ENST00000632685 3147 ntTSL 1 (best) BASIC3.47□□□□□ -1.85
HOXD9P28356 RNF17-204ENST00000339524 2203 ntTSL 2 BASIC3.47□□□□□ -1.85
HOXD9P28356 MT-ND5-201ENST00000361567 1812 ntAPPRIS P1 BASIC3.47□□□□□ -1.85
HOXD9P28356 STK31-205ENST00000433467 3085 ntTSL 2 BASIC3.46□□□□□ -1.86
HOXD9P28356 RNU6-1287P-201ENST00000362914 107 ntBASIC3.46□□□□□ -1.86
HOXD9P28356 Y_RNA.212-201ENST00000364177 102 ntBASIC3.46□□□□□ -1.86
HOXD9P28356 SMIM11P1-201ENST00000369586 178 ntBASIC3.46□□□□□ -1.86
HOXD9P28356 DEFB109C-201ENST00000382575 264 ntBASIC3.46□□□□□ -1.86
HOXD9P28356 DEFB109B-201ENST00000382656 264 ntBASIC3.46□□□□□ -1.86
HOXD9P28356 RNU6-1060P-201ENST00000384664 107 ntBASIC3.46□□□□□ -1.86
HOXD9P28356 UBE2V1P2-201ENST00000397758 440 ntBASIC3.46□□□□□ -1.86
HOXD9P28356 LINC01201-201ENST00000412420 294 ntTSL 3 BASIC3.46□□□□□ -1.86
HOXD9P28356 RPL9P9-201ENST00000418824 636 ntTSL 2 BASIC3.46□□□□□ -1.86
HOXD9P28356 AC090952.1-201ENST00000424242 446 ntTSL 3 BASIC3.46□□□□□ -1.86
HOXD9P28356 AL022396.1-201ENST00000427011 386 ntTSL 3 BASIC3.46□□□□□ -1.86
Retrieved 100 of 98,524 protein–RNA pairs in 97.3 ms