Protein–RNA interactions for Protein: O43365

HOXA3, Homeobox protein Hox-A3, humanhuman

Predicted RBP Predictions only

Length 443 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXA3O43365 AC093159.1-201ENST00000416845 424 ntTSL 3 BASIC3.58□□□□□ -1.84
HOXA3O43365 AC007560.1-201ENST00000426912 237 ntBASIC3.58□□□□□ -1.84
HOXA3O43365 RPL7P2-201ENST00000427639 268 ntBASIC3.58□□□□□ -1.84
HOXA3O43365 AC007271.1-201ENST00000428188 382 ntTSL 3 BASIC3.58□□□□□ -1.84
HOXA3O43365 AC073325.1-201ENST00000443714 542 ntTSL 4 BASIC3.58□□□□□ -1.84
HOXA3O43365 CHEK2P4-201ENST00000450340 246 ntBASIC3.58□□□□□ -1.84
HOXA3O43365 AC012671.1-201ENST00000451912 203 ntBASIC3.58□□□□□ -1.84
HOXA3O43365 AC022616.4-201ENST00000522985 181 ntBASIC3.58□□□□□ -1.84
HOXA3O43365 AC087362.1-201ENST00000527912 434 ntTSL 5 BASIC3.58□□□□□ -1.84
HOXA3O43365 AP000889.1-201ENST00000530968 660 ntBASIC3.58□□□□□ -1.84
HOXA3O43365 AF099810.1-201ENST00000554219 525 ntTSL 3 BASIC3.58□□□□□ -1.84
HOXA3O43365 AC103996.1-201ENST00000555468 102 ntBASIC3.58□□□□□ -1.84
HOXA3O43365 TRAV28-201ENST00000557548 323 ntBASIC3.58□□□□□ -1.84
HOXA3O43365 AC053481.4-201ENST00000583164 216 ntBASIC3.58□□□□□ -1.84
HOXA3O43365 AC015911.9-201ENST00000591634 185 ntTSL 5 BASIC3.58□□□□□ -1.84
HOXA3O43365 AC008121.1-201ENST00000603244 268 ntBASIC3.58□□□□□ -1.84
HOXA3O43365 AC124312.5-201ENST00000604451 268 ntBASIC3.58□□□□□ -1.84
HOXA3O43365 AC004805.2-201ENST00000605382 482 ntBASIC3.58□□□□□ -1.84
HOXA3O43365 UBE2Q2P6-201ENST00000612666 153 ntBASIC3.58□□□□□ -1.84
HOXA3O43365 PCDH11X-204ENST00000373088 4069 ntAPPRIS ALT2 TSL 1 (best) BASIC3.58□□□□□ -1.84
HOXA3O43365 ZNF705D-202ENST00000400085 3377 ntAPPRIS P1 TSL 5 BASIC3.58□□□□□ -1.84
HOXA3O43365 RIMS1-204ENST00000401910 3542 ntTSL 2 BASIC3.58□□□□□ -1.84
HOXA3O43365 TFPI-201ENST00000233156 3885 ntAPPRIS P1 TSL 1 (best) BASIC3.58□□□□□ -1.84
HOXA3O43365 GALNT3-202ENST00000409882 2107 ntTSL 1 (best) BASIC3.58□□□□□ -1.84
HOXA3O43365 ETV1-203ENST00000403527 3363 ntTSL 1 (best) BASIC3.57□□□□□ -1.84
HOXA3O43365 MS4A1-201ENST00000345732 3331 ntAPPRIS P1 TSL 1 (best) BASIC3.57□□□□□ -1.84
HOXA3O43365 MIR331-201ENST00000362302 94 ntBASIC3.57□□□□□ -1.84
HOXA3O43365 RNA5SP515-201ENST00000364570 118 ntBASIC3.57□□□□□ -1.84
HOXA3O43365 RNA5SP366-201ENST00000365454 123 ntBASIC3.57□□□□□ -1.84
HOXA3O43365 SNORD14.1-201ENST00000365609 90 ntBASIC3.57□□□□□ -1.84
HOXA3O43365 RNU6-166P-201ENST00000384371 107 ntBASIC3.57□□□□□ -1.84
HOXA3O43365 Y_RNA.533-201ENST00000384596 114 ntBASIC3.57□□□□□ -1.84
HOXA3O43365 MIR521-1-201ENST00000384902 87 ntBASIC3.57□□□□□ -1.84
HOXA3O43365 MAPK10-208ENST00000395169 4049 ntTSL 1 (best) BASIC3.57□□□□□ -1.84
HOXA3O43365 HDGFP1-201ENST00000405943 252 ntBASIC3.57□□□□□ -1.84
HOXA3O43365 U3.42-201ENST00000408746 214 ntBASIC3.57□□□□□ -1.84
HOXA3O43365 MORN2-203ENST00000409131 544 ntTSL 5 BASIC3.57□□□□□ -1.84
HOXA3O43365 PREPL-206ENST00000409936 5212 ntAPPRIS P1 TSL 1 (best) BASIC3.57□□□□□ -1.84
HOXA3O43365 AC118345.1-201ENST00000411785 366 ntTSL 3 BASIC3.57□□□□□ -1.84
HOXA3O43365 RRAS2-202ENST00000414023 1884 ntTSL 2 BASIC3.57□□□□□ -1.84
HOXA3O43365 U51244.1-201ENST00000423120 374 ntTSL 3 BASIC3.57□□□□□ -1.84
HOXA3O43365 ZNF72P-201ENST00000425869 1908 ntBASIC3.57□□□□□ -1.84
HOXA3O43365 ZNF534-204ENST00000433050 2047 ntAPPRIS ALT2 TSL 1 (best) BASIC3.57□□□□□ -1.84
HOXA3O43365 AC093083.1-201ENST00000438633 347 ntTSL 3 BASIC3.57□□□□□ -1.84
HOXA3O43365 TRAPPC2P8-201ENST00000440676 396 ntBASIC3.57□□□□□ -1.84
HOXA3O43365 ATP5J2-209ENST00000488775 306 ntTSL 2 BASIC3.57□□□□□ -1.84
HOXA3O43365 AC091167.1-201ENST00000492017 396 ntBASIC3.57□□□□□ -1.84
HOXA3O43365 AC078918.1-201ENST00000498515 228 ntBASIC3.57□□□□□ -1.84
HOXA3O43365 RNA5SP497-201ENST00000516081 97 ntBASIC3.57□□□□□ -1.84
HOXA3O43365 RNU6-572P-201ENST00000516724 80 ntBASIC3.57□□□□□ -1.84
HOXA3O43365 TUG1-201ENST00000519077 5673 ntTSL 1 (best) BASIC3.57□□□□□ -1.84
HOXA3O43365 AL049775.2-201ENST00000557547 558 ntTSL 4 BASIC3.57□□□□□ -1.84
HOXA3O43365 AC008669.1-201ENST00000565823 2178 ntBASIC3.57□□□□□ -1.84
HOXA3O43365 AC007785.2-201ENST00000598627 1916 ntBASIC3.57□□□□□ -1.84
HOXA3O43365 VN1R85P-201ENST00000601587 426 ntBASIC3.57□□□□□ -1.84
HOXA3O43365 AL158827.2-201ENST00000602494 330 ntBASIC3.57□□□□□ -1.84
HOXA3O43365 AC009314.1-201ENST00000603871 304 ntBASIC3.57□□□□□ -1.84
HOXA3O43365 AC016727.2-201ENST00000603988 621 ntBASIC3.57□□□□□ -1.84
HOXA3O43365 AL355598.1-201ENST00000604169 202 ntBASIC3.57□□□□□ -1.84
HOXA3O43365 AC136601.2-201ENST00000604356 474 ntBASIC3.57□□□□□ -1.84
HOXA3O43365 AC113403.1-201ENST00000604910 193 ntBASIC3.57□□□□□ -1.84
HOXA3O43365 AC090425.1-201ENST00000610007 140 ntBASIC3.57□□□□□ -1.84
HOXA3O43365 AC004852.3-201ENST00000614131 326 ntBASIC3.57□□□□□ -1.84
HOXA3O43365 uc_338.13-201ENST00000618243 179 ntBASIC3.57□□□□□ -1.84
HOXA3O43365 RAG2-209ENST00000618712 2818 ntAPPRIS P1 TSL 4 BASIC3.57□□□□□ -1.84
HOXA3O43365 AL513314.2-204ENST00000619187 459 ntTSL 5 BASIC3.57□□□□□ -1.84
HOXA3O43365 AL161782.1-201ENST00000622930 586 ntTSL 3 BASIC3.57□□□□□ -1.84
HOXA3O43365 AC112200.1-201ENST00000625015 234 ntBASIC3.57□□□□□ -1.84
HOXA3O43365 MIR3653-201ENST00000625572 110 ntBASIC3.57□□□□□ -1.84
HOXA3O43365 NAA50-211ENST00000630058 177 ntTSL 5 BASIC3.57□□□□□ -1.84
HOXA3O43365 AL691447.3-201ENST00000635020 330 ntBASIC3.57□□□□□ -1.84
HOXA3O43365 MIR4272-201ENST00000635924 64 ntBASIC3.57□□□□□ -1.84
HOXA3O43365 PREPL-207ENST00000409957 4703 ntTSL 5 BASIC3.57□□□□□ -1.84
HOXA3O43365 KCNJ16-211ENST00000615244 4190 ntAPPRIS P1 TSL 4 BASIC3.57□□□□□ -1.84
HOXA3O43365 EMSY-207ENST00000525919 4074 ntAPPRIS ALT1 TSL 1 (best) BASIC3.57□□□□□ -1.84
HOXA3O43365 AP1G1-207ENST00000564155 2723 ntTSL 1 (best) BASIC3.57□□□□□ -1.84
HOXA3O43365 GPRC6A-203ENST00000530250 2310 ntTSL 1 (best) BASIC3.56□□□□□ -1.84
HOXA3O43365 LINC01902-202ENST00000636983 4607 ntTSL 5 BASIC3.56□□□□□ -1.84
HOXA3O43365 MIR34A-201ENST00000385130 110 ntBASIC3.56□□□□□ -1.84
HOXA3O43365 MIR195-201ENST00000385194 87 ntBASIC3.56□□□□□ -1.84
HOXA3O43365 MT-TG-201ENST00000387429 68 ntBASIC3.56□□□□□ -1.84
HOXA3O43365 RNA5SP372-201ENST00000390836 115 ntBASIC3.56□□□□□ -1.84
HOXA3O43365 Y_RNA.618-201ENST00000410949 107 ntBASIC3.56□□□□□ -1.84
HOXA3O43365 ITCH-IT1-201ENST00000418598 208 ntTSL 3 BASIC3.56□□□□□ -1.84
HOXA3O43365 AL117339.3-201ENST00000418733 162 ntBASIC3.56□□□□□ -1.84
HOXA3O43365 CBX3P6-201ENST00000430257 527 ntBASIC3.56□□□□□ -1.84
HOXA3O43365 AC087650.1-201ENST00000431445 468 ntBASIC3.56□□□□□ -1.84
HOXA3O43365 AC092573.2-201ENST00000434546 243 ntBASIC3.56□□□□□ -1.84
HOXA3O43365 AC069285.2-201ENST00000440210 275 ntBASIC3.56□□□□□ -1.84
HOXA3O43365 AC114501.3-201ENST00000453648 164 ntTSL 5 BASIC3.56□□□□□ -1.84
HOXA3O43365 ANP32BP2-201ENST00000454525 545 ntBASIC3.56□□□□□ -1.84
HOXA3O43365 AC092798.1-201ENST00000458542 409 ntBASIC3.56□□□□□ -1.84
HOXA3O43365 U8.21-201ENST00000459536 136 ntBASIC3.56□□□□□ -1.84
HOXA3O43365 AC010655.3-201ENST00000478818 450 ntBASIC3.56□□□□□ -1.84
HOXA3O43365 AC104164.2-201ENST00000496953 495 ntBASIC3.56□□□□□ -1.84
HOXA3O43365 AC114801.2-201ENST00000503825 781 ntBASIC3.56□□□□□ -1.84
HOXA3O43365 AC025741.1-201ENST00000506100 544 ntTSL 4 BASIC3.56□□□□□ -1.84
HOXA3O43365 MRPS35P2-201ENST00000508242 191 ntBASIC3.56□□□□□ -1.84
HOXA3O43365 AC111194.2-201ENST00000511222 455 ntTSL 5 BASIC3.56□□□□□ -1.84
HOXA3O43365 Y_RNA.687-201ENST00000516558 91 ntBASIC3.56□□□□□ -1.84
Retrieved 100 of 98,524 protein–RNA pairs in 108.9 ms