Protein–RNA interactions for Protein: Q9H400

LIME1, Lck-interacting transmembrane adapter 1, humanhuman

Predictions only

Length 295 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIME1Q9H400 AC098826.3-201ENST00000603823 466 ntBASIC2.58□□□□□ -2
LIME1Q9H400 AL136363.1-201ENST00000605349 337 ntBASIC2.58□□□□□ -2
LIME1Q9H400 NDUFA8P1-201ENST00000605525 367 ntBASIC2.58□□□□□ -2
LIME1Q9H400 AL133173.2-201ENST00000614270 90 ntBASIC2.58□□□□□ -2
LIME1Q9H400 AC091834.1-201ENST00000614543 472 ntBASIC2.58□□□□□ -2
LIME1Q9H400 AC072046.2-201ENST00000618366 268 ntBASIC2.58□□□□□ -2
LIME1Q9H400 AC136475.10-201ENST00000620253 385 ntBASIC2.58□□□□□ -2
LIME1Q9H400 AC006111.3-201ENST00000622137 383 ntBASIC2.58□□□□□ -2
LIME1Q9H400 THNSL1-201ENST00000376356 3691 ntAPPRIS P1 TSL 1 (best) BASIC2.58□□□□□ -2
LIME1Q9H400 MIR133A1HG-202ENST00000581072 4226 ntTSL 1 (best) BASIC2.58□□□□□ -2
LIME1Q9H400 ECT2-211ENST00000441497 2825 ntAPPRIS P2 TSL 1 (best) BASIC2.58□□□□□ -2
LIME1Q9H400 ZNF626-204ENST00000612591 4404 ntAPPRIS P1 TSL 5 BASIC2.58□□□□□ -2
LIME1Q9H400 PRKACB-217ENST00000610457 4206 ntTSL 2 BASIC2.57□□□□□ -2
LIME1Q9H400 NEBL-202ENST00000377122 9216 ntTSL 1 (best) BASIC2.57□□□□□ -2
LIME1Q9H400 ROCK2-203ENST00000401753 4017 ntTSL 1 (best) BASIC2.57□□□□□ -2
LIME1Q9H400 DNAH12-208ENST00000495027 12146 ntAPPRIS P1 TSL 5 BASIC2.57□□□□□ -2
LIME1Q9H400 Y_RNA.436-201ENST00000384097 102 ntBASIC2.57□□□□□ -2
LIME1Q9H400 MIR181B1-201ENST00000385240 110 ntBASIC2.57□□□□□ -2
LIME1Q9H400 RNA5SP508-201ENST00000411327 119 ntBASIC2.57□□□□□ -2
LIME1Q9H400 TRIAP1P1-201ENST00000427062 225 ntBASIC2.57□□□□□ -2
LIME1Q9H400 PCDH9-AS1-201ENST00000430861 532 ntTSL 2 BASIC2.57□□□□□ -2
LIME1Q9H400 MYL8P-204ENST00000431574 518 ntBASIC2.57□□□□□ -2
LIME1Q9H400 AC005019.2-201ENST00000434321 359 ntTSL 5 BASIC2.57□□□□□ -2
LIME1Q9H400 NEFMP1-201ENST00000443423 1006 ntBASIC2.57□□□□□ -2
LIME1Q9H400 TPTE2P5-203ENST00000458118 728 ntBASIC2.57□□□□□ -2
LIME1Q9H400 MCCC1-AS1-201ENST00000471731 765 ntTSL 5 BASIC2.57□□□□□ -2
LIME1Q9H400 C1orf112-206ENST00000472795 925 ntAPPRIS ALT2 TSL 2 BASIC2.57□□□□□ -2
LIME1Q9H400 AC117440.1-201ENST00000474107 571 ntBASIC2.57□□□□□ -2
LIME1Q9H400 AP004217.1-201ENST00000480579 346 ntBASIC2.57□□□□□ -2
LIME1Q9H400 AC138853.1-201ENST00000503549 823 ntBASIC2.57□□□□□ -2
LIME1Q9H400 AC005920.2-201ENST00000509833 332 ntTSL 3 BASIC2.57□□□□□ -2
LIME1Q9H400 RN7SKP298-201ENST00000515950 94 ntBASIC2.57□□□□□ -2
LIME1Q9H400 HMGB1P41-201ENST00000520234 440 ntBASIC2.57□□□□□ -2
LIME1Q9H400 AC022695.3-201ENST00000523385 478 ntTSL 3 BASIC2.57□□□□□ -2
LIME1Q9H400 G2E3-AS1-202ENST00000550118 609 ntTSL 5 BASIC2.57□□□□□ -2
LIME1Q9H400 AGGF1P4-201ENST00000568249 801 ntBASIC2.57□□□□□ -2
LIME1Q9H400 AC024619.4-201ENST00000580924 316 ntBASIC2.57□□□□□ -2
LIME1Q9H400 AC103987.3-201ENST00000582071 292 ntBASIC2.57□□□□□ -2
LIME1Q9H400 MSMB-202ENST00000582163 488 ntAPPRIS P1 TSL 1 (best) BASIC2.57□□□□□ -2
LIME1Q9H400 AC007001.1-201ENST00000590912 670 ntTSL 5 BASIC2.57□□□□□ -2
LIME1Q9H400 AC008739.1-201ENST00000598137 575 ntTSL 2 BASIC2.57□□□□□ -2
LIME1Q9H400 DPY19L1-208ENST00000612226 607 ntTSL 1 (best) BASIC2.57□□□□□ -2
LIME1Q9H400 AC138649.3-201ENST00000622154 254 ntBASIC2.57□□□□□ -2
LIME1Q9H400 PTP4A2-219ENST00000626355 606 ntTSL 5 BASIC2.57□□□□□ -2
LIME1Q9H400 MTND5P42-201ENST00000637720 498 ntBASIC2.57□□□□□ -2
LIME1Q9H400 AC068137.4-201ENST00000638485 296 ntBASIC2.57□□□□□ -2
LIME1Q9H400 NANOGNB-202ENST00000640040 824 ntAPPRIS ALT2 TSL 5 BASIC2.57□□□□□ -2
LIME1Q9H400 CEP57L1-203ENST00000368970 1680 ntAPPRIS ALT2 TSL 5 BASIC2.57□□□□□ -2
LIME1Q9H400 AC073343.1-201ENST00000328239 651 ntBASIC2.56□□□□□ -2
LIME1Q9H400 MDM2-207ENST00000360430 891 ntTSL 1 (best) BASIC2.56□□□□□ -2
LIME1Q9H400 RNU6-623P-201ENST00000363143 105 ntBASIC2.56□□□□□ -2
LIME1Q9H400 RNU6-188P-201ENST00000364207 107 ntBASIC2.56□□□□□ -2
LIME1Q9H400 SNORA14A-201ENST00000364773 135 ntBASIC2.56□□□□□ -2
LIME1Q9H400 RNU6-946P-201ENST00000383878 107 ntBASIC2.56□□□□□ -2
LIME1Q9H400 Y_RNA.559-201ENST00000384686 107 ntBASIC2.56□□□□□ -2
LIME1Q9H400 Y_RNA.582-201ENST00000391023 95 ntBASIC2.56□□□□□ -2
LIME1Q9H400 RNA5SP252-201ENST00000391131 119 ntBASIC2.56□□□□□ -2
LIME1Q9H400 RNU2-66P-201ENST00000410650 161 ntBASIC2.56□□□□□ -2
LIME1Q9H400 AL365356.1-201ENST00000411512 736 ntTSL 3 BASIC2.56□□□□□ -2
LIME1Q9H400 MRPL50P2-201ENST00000416821 482 ntBASIC2.56□□□□□ -2
LIME1Q9H400 AL136322.1-201ENST00000422250 548 ntTSL 4 BASIC2.56□□□□□ -2
LIME1Q9H400 ZNF863P-201ENST00000426746 417 ntBASIC2.56□□□□□ -2
LIME1Q9H400 AC010975.2-201ENST00000427781 588 ntBASIC2.56□□□□□ -2
LIME1Q9H400 ELOCP14-201ENST00000428070 331 ntBASIC2.56□□□□□ -2
LIME1Q9H400 AC093106.2-201ENST00000428212 385 ntBASIC2.56□□□□□ -2
LIME1Q9H400 AC114808.2-201ENST00000428335 536 ntTSL 4 BASIC2.56□□□□□ -2
LIME1Q9H400 RPL21P40-201ENST00000428586 483 ntBASIC2.56□□□□□ -2
LIME1Q9H400 AC007919.1-201ENST00000429380 217 ntBASIC2.56□□□□□ -2
LIME1Q9H400 AL137789.1-201ENST00000439443 682 ntTSL 3 BASIC2.56□□□□□ -2
LIME1Q9H400 ELOCP7-201ENST00000439968 331 ntBASIC2.56□□□□□ -2
LIME1Q9H400 DNAJC19P4-201ENST00000440115 345 ntBASIC2.56□□□□□ -2
LIME1Q9H400 LINC01510-201ENST00000441991 468 ntTSL 3 BASIC2.56□□□□□ -2
LIME1Q9H400 EEF1B2P7-201ENST00000451177 676 ntBASIC2.56□□□□□ -2
LIME1Q9H400 AC010099.1-201ENST00000455434 375 ntBASIC2.56□□□□□ -2
LIME1Q9H400 ARL4AP2-201ENST00000507378 601 ntBASIC2.56□□□□□ -2
LIME1Q9H400 AC079349.1-201ENST00000509096 589 ntTSL 2 BASIC2.56□□□□□ -2
LIME1Q9H400 SNORD27.1-201ENST00000516319 72 ntBASIC2.56□□□□□ -2
LIME1Q9H400 SNORD59.2-201ENST00000516873 68 ntBASIC2.56□□□□□ -2
LIME1Q9H400 RNU6-711P-201ENST00000517255 106 ntBASIC2.56□□□□□ -2
LIME1Q9H400 AP000867.2-201ENST00000532468 320 ntBASIC2.56□□□□□ -2
LIME1Q9H400 AC079600.2-201ENST00000550076 130 ntBASIC2.56□□□□□ -2
LIME1Q9H400 AC084756.1-201ENST00000558237 606 ntTSL 5 BASIC2.56□□□□□ -2
LIME1Q9H400 AC026462.2-201ENST00000565771 286 ntTSL 2 BASIC2.56□□□□□ -2
LIME1Q9H400 AC009145.3-201ENST00000567386 476 ntTSL 3 BASIC2.56□□□□□ -2
LIME1Q9H400 AC005154.1-222ENST00000579024 341 ntTSL 5 BASIC2.56□□□□□ -2
LIME1Q9H400 AC069061.2-202ENST00000580280 357 ntTSL 3 BASIC2.56□□□□□ -2
LIME1Q9H400 AP005671.1-201ENST00000581798 463 ntTSL 3 BASIC2.56□□□□□ -2
LIME1Q9H400 LINC01482-203ENST00000589610 468 ntTSL 3 BASIC2.56□□□□□ -2
LIME1Q9H400 AC174048.1-201ENST00000603389 144 ntBASIC2.56□□□□□ -2
LIME1Q9H400 BNIP3P10-201ENST00000605360 577 ntBASIC2.56□□□□□ -2
LIME1Q9H400 AC244093.3-201ENST00000615419 411 ntTSL 3 BASIC2.56□□□□□ -2
LIME1Q9H400 TFG-209ENST00000615993 1244 ntTSL 1 (best) BASIC2.56□□□□□ -2
LIME1Q9H400 AL589994.2-201ENST00000621124 579 ntBASIC2.56□□□□□ -2
LIME1Q9H400 LINC01002-215ENST00000632203 314 ntTSL 5 BASIC2.56□□□□□ -2
LIME1Q9H400 AC215522.3-201ENST00000635602 354 ntTSL 5 BASIC2.56□□□□□ -2
LIME1Q9H400 VBP1-204ENST00000625964 1547 ntTSL 5 BASIC2.56□□□□□ -2
LIME1Q9H400 OR4M1-202ENST00000641200 3493 ntAPPRIS P1 BASIC2.56□□□□□ -2
LIME1Q9H400 RAPGEF6-210ENST00000512052 3535 ntTSL 2 BASIC2.56□□□□□ -2
LIME1Q9H400 USP15-203ENST00000353364 14950 ntAPPRIS P3 TSL 1 (best) BASIC2.55□□□□□ -2
LIME1Q9H400 MIER3-203ENST00000381213 5198 ntAPPRIS P3 TSL 1 (best) BASIC2.55□□□□□ -2
Retrieved 100 of 98,524 protein–RNA pairs in 140.5 ms