Protein–RNA interactions for Protein: Q96JC1

VPS39, Vam6/Vps39-like protein, humanhuman

Predictions only

Length 886 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39Q96JC1 AC104688.1-201ENST00000447158 419 ntTSL 3 BASIC2.57□□□□□ -2
VPS39Q96JC1 AC011753.1-201ENST00000451001 220 ntBASIC2.57□□□□□ -2
VPS39Q96JC1 KATNBL1P6-201ENST00000453433 915 ntBASIC2.57□□□□□ -2
VPS39Q96JC1 IFT74-AS1-201ENST00000456198 405 ntTSL 2 BASIC2.57□□□□□ -2
VPS39Q96JC1 RNU7-59P-201ENST00000459101 61 ntBASIC2.57□□□□□ -2
VPS39Q96JC1 BZW1P2-201ENST00000473537 826 ntBASIC2.57□□□□□ -2
VPS39Q96JC1 AC026801.1-201ENST00000497178 464 ntBASIC2.57□□□□□ -2
VPS39Q96JC1 AC005178.1-201ENST00000508392 440 ntBASIC2.57□□□□□ -2
VPS39Q96JC1 LINC02501-201ENST00000510420 426 ntTSL 2 BASIC2.57□□□□□ -2
VPS39Q96JC1 AC096725.1-201ENST00000514266 313 ntBASIC2.57□□□□□ -2
VPS39Q96JC1 RN7SKP258-201ENST00000517151 304 ntBASIC2.57□□□□□ -2
VPS39Q96JC1 CKS1BP7-201ENST00000522230 235 ntBASIC2.57□□□□□ -2
VPS39Q96JC1 AP000907.2-201ENST00000530827 353 ntBASIC2.57□□□□□ -2
VPS39Q96JC1 AL136146.2-201ENST00000534594 494 ntTSL 2 BASIC2.57□□□□□ -2
VPS39Q96JC1 AC091489.2-201ENST00000566263 604 ntBASIC2.57□□□□□ -2
VPS39Q96JC1 AC145350.1-201ENST00000567426 208 ntBASIC2.57□□□□□ -2
VPS39Q96JC1 AC016229.1-201ENST00000589242 487 ntTSL 5 BASIC2.57□□□□□ -2
VPS39Q96JC1 AL356575.1-201ENST00000603008 283 ntBASIC2.57□□□□□ -2
VPS39Q96JC1 AC008121.1-201ENST00000603244 268 ntBASIC2.57□□□□□ -2
VPS39Q96JC1 AL355598.1-201ENST00000604169 202 ntBASIC2.57□□□□□ -2
VPS39Q96JC1 DUSP12P1-201ENST00000612874 516 ntBASIC2.57□□□□□ -2
VPS39Q96JC1 AC245884.12-201ENST00000615364 59 ntBASIC2.57□□□□□ -2
VPS39Q96JC1 AC027807.2-201ENST00000616099 408 ntBASIC2.57□□□□□ -2
VPS39Q96JC1 AC104010.1-201ENST00000616889 150 ntBASIC2.57□□□□□ -2
VPS39Q96JC1 AC007494.3-201ENST00000624660 743 ntBASIC2.57□□□□□ -2
VPS39Q96JC1 ZNF117-203ENST00000610793 1374 ntTSL 2 BASIC2.57□□□□□ -2
VPS39Q96JC1 LINC01111-201ENST00000518732 1663 ntTSL 1 (best) BASIC2.57□□□□□ -2
VPS39Q96JC1 DNAH14-210ENST00000439375 13548 ntAPPRIS P1 TSL 5 BASIC2.57□□□□□ -2
VPS39Q96JC1 MTND5P30-201ENST00000452896 1731 ntBASIC2.56□□□□□ -2
VPS39Q96JC1 OR5K1-202ENST00000642057 3466 ntAPPRIS P1 BASIC2.56□□□□□ -2
VPS39Q96JC1 ZNF470-202ENST00000391709 6601 ntAPPRIS P1 TSL 5 BASIC2.56□□□□□ -2
VPS39Q96JC1 ZNF271P-202ENST00000465539 1970 ntBASIC2.56□□□□□ -2
VPS39Q96JC1 CCSAP-202ENST00000366686 4399 ntTSL 2 BASIC2.56□□□□□ -2
VPS39Q96JC1 AL365361.1-201ENST00000566942 3481 ntBASIC2.56□□□□□ -2
VPS39Q96JC1 HMGB1-201ENST00000326004 821 ntTSL 3 BASIC2.56□□□□□ -2
VPS39Q96JC1 RNU6-525P-201ENST00000363685 104 ntBASIC2.56□□□□□ -2
VPS39Q96JC1 MDM4-202ENST00000367180 547 ntTSL 3 BASIC2.56□□□□□ -2
VPS39Q96JC1 EEF1E1-201ENST00000379715 1077 ntAPPRIS P1 TSL 1 (best) BASIC2.56□□□□□ -2
VPS39Q96JC1 MIR218-1-201ENST00000384999 110 ntBASIC2.56□□□□□ -2
VPS39Q96JC1 AL360182.1-201ENST00000397433 468 ntBASIC2.56□□□□□ -2
VPS39Q96JC1 GPM6BP2-201ENST00000432046 144 ntBASIC2.56□□□□□ -2
VPS39Q96JC1 GPM6BP1-201ENST00000446387 144 ntBASIC2.56□□□□□ -2
VPS39Q96JC1 AL158210.1-201ENST00000448835 500 ntTSL 3 BASIC2.56□□□□□ -2
VPS39Q96JC1 C1orf112-206ENST00000472795 925 ntAPPRIS ALT2 TSL 2 BASIC2.56□□□□□ -2
VPS39Q96JC1 ANKRD7-204ENST00000477532 744 ntTSL 5 BASIC2.56□□□□□ -2
VPS39Q96JC1 EPGN-208ENST00000509145 222 ntTSL 1 (best) BASIC2.56□□□□□ -2
VPS39Q96JC1 AC096736.1-201ENST00000512609 947 ntTSL 3 BASIC2.56□□□□□ -2
VPS39Q96JC1 AC092436.2-201ENST00000515188 411 ntTSL 2 BASIC2.56□□□□□ -2
VPS39Q96JC1 AC026407.1-201ENST00000518369 204 ntBASIC2.56□□□□□ -2
VPS39Q96JC1 OR5BN1P-201ENST00000532955 829 ntBASIC2.56□□□□□ -2
VPS39Q96JC1 AL133368.2-201ENST00000556978 386 ntTSL 3 BASIC2.56□□□□□ -2
VPS39Q96JC1 AC021739.1-201ENST00000559631 174 ntBASIC2.56□□□□□ -2
VPS39Q96JC1 LARP7P3-201ENST00000579888 337 ntBASIC2.56□□□□□ -2
VPS39Q96JC1 LINC01897-203ENST00000591503 369 ntTSL 2 BASIC2.56□□□□□ -2
VPS39Q96JC1 AC098826.3-201ENST00000603823 466 ntBASIC2.56□□□□□ -2
VPS39Q96JC1 DPPA3P3-201ENST00000603842 430 ntBASIC2.56□□□□□ -2
VPS39Q96JC1 AL161798.1-201ENST00000604630 131 ntBASIC2.56□□□□□ -2
VPS39Q96JC1 DPY19L1-208ENST00000612226 607 ntTSL 1 (best) BASIC2.56□□□□□ -2
VPS39Q96JC1 AC010678.1-201ENST00000614118 713 ntBASIC2.56□□□□□ -2
VPS39Q96JC1 FKTN-204ENST00000448551 1700 ntTSL 2 BASIC2.56□□□□□ -2
VPS39Q96JC1 SERPINI2-209ENST00000616363 1769 ntTSL 5 BASIC2.56□□□□□ -2
VPS39Q96JC1 PARPBP-203ENST00000392911 1916 ntTSL 5 BASIC2.56□□□□□ -2
VPS39Q96JC1 ADAM3A-203ENST00000461344 2157 ntBASIC2.56□□□□□ -2
VPS39Q96JC1 OLFM3-206ENST00000536598 2801 ntTSL 5 BASIC2.55□□□□□ -2
VPS39Q96JC1 RGPD6-201ENST00000329516 7165 ntAPPRIS P1 TSL 1 (best) BASIC2.55□□□□□ -2
VPS39Q96JC1 MT-ATP6-201ENST00000361899 681 ntAPPRIS P1 BASIC2.55□□□□□ -2
VPS39Q96JC1 SNORD62.1-201ENST00000362541 86 ntBASIC2.55□□□□□ -2
VPS39Q96JC1 LINC00397-201ENST00000422074 344 ntTSL 3 BASIC2.55□□□□□ -2
VPS39Q96JC1 RPS27AP14-201ENST00000422868 454 ntBASIC2.55□□□□□ -2
VPS39Q96JC1 LINC02532-205ENST00000430094 628 ntTSL 5 BASIC2.55□□□□□ -2
VPS39Q96JC1 AC236972.1-201ENST00000433225 199 ntBASIC2.55□□□□□ -2
VPS39Q96JC1 AL353680.1-201ENST00000433788 337 ntTSL 3 BASIC2.55□□□□□ -2
VPS39Q96JC1 AC007003.1-202ENST00000439318 349 ntTSL 5 BASIC2.55□□□□□ -2
VPS39Q96JC1 AC007879.4-201ENST00000440545 361 ntTSL 3 BASIC2.55□□□□□ -2
VPS39Q96JC1 AC118469.1-201ENST00000442943 488 ntBASIC2.55□□□□□ -2
VPS39Q96JC1 IFNA11P-201ENST00000446352 526 ntBASIC2.55□□□□□ -2
VPS39Q96JC1 HMGN2P10-201ENST00000448085 265 ntBASIC2.55□□□□□ -2
VPS39Q96JC1 AL135787.1-201ENST00000450154 302 ntTSL 3 BASIC2.55□□□□□ -2
VPS39Q96JC1 MTATP6P7-201ENST00000453315 681 ntBASIC2.55□□□□□ -2
VPS39Q96JC1 AL441989.1-201ENST00000454204 382 ntTSL 3 BASIC2.55□□□□□ -2
VPS39Q96JC1 ATP6V1G3-204ENST00000489986 449 ntTSL 1 (best) BASIC2.55□□□□□ -2
VPS39Q96JC1 RPS27P27-201ENST00000498779 255 ntBASIC2.55□□□□□ -2
VPS39Q96JC1 AC098862.1-201ENST00000504991 413 ntBASIC2.55□□□□□ -2
VPS39Q96JC1 RNU6-64P-201ENST00000517119 105 ntBASIC2.55□□□□□ -2
VPS39Q96JC1 LINC00824-201ENST00000517583 805 ntTSL 5 BASIC2.55□□□□□ -2
VPS39Q96JC1 AC025881.1-201ENST00000518851 512 ntBASIC2.55□□□□□ -2
VPS39Q96JC1 AC084116.3-201ENST00000519123 429 ntTSL 3 BASIC2.55□□□□□ -2
VPS39Q96JC1 IGHVII-62-1-201ENST00000519283 235 ntBASIC2.55□□□□□ -2
VPS39Q96JC1 HMGB1P41-201ENST00000520234 440 ntBASIC2.55□□□□□ -2
VPS39Q96JC1 AP005902.1-201ENST00000521358 186 ntBASIC2.55□□□□□ -2
VPS39Q96JC1 SPINK7-205ENST00000523535 299 ntTSL 2 BASIC2.55□□□□□ -2
VPS39Q96JC1 AC108471.2-204ENST00000526807 784 ntTSL 5 BASIC2.55□□□□□ -2
VPS39Q96JC1 MTND4LP18-201ENST00000526864 291 ntBASIC2.55□□□□□ -2
VPS39Q96JC1 LINC02235-201ENST00000534675 466 ntTSL 5 BASIC2.55□□□□□ -2
VPS39Q96JC1 AC243972.3-201ENST00000539655 198 ntBASIC2.55□□□□□ -2
VPS39Q96JC1 AKIRIN1P1-201ENST00000547384 544 ntBASIC2.55□□□□□ -2
VPS39Q96JC1 ZNF519P3-201ENST00000557158 1032 ntBASIC2.55□□□□□ -2
VPS39Q96JC1 AC002400.1-201ENST00000569310 726 ntBASIC2.55□□□□□ -2
VPS39Q96JC1 MIR5697-201ENST00000578045 78 ntBASIC2.55□□□□□ -2
VPS39Q96JC1 MIR3915-201ENST00000578518 97 ntBASIC2.55□□□□□ -2
Retrieved 100 of 98,524 protein–RNA pairs in 138.5 ms