Protein–RNA interactions for Protein: Q8NDQ6

ZNF540, Zinc finger protein 540, humanhuman

Predictions only

Length 660 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ZNF540Q8NDQ6 DPPA3P3-201ENST00000603842 430 ntBASIC2.49□□□□□ -2.01
ZNF540Q8NDQ6 AL592221.1-201ENST00000605266 382 ntBASIC2.49□□□□□ -2.01
ZNF540Q8NDQ6 AC018638.7-201ENST00000605836 1114 ntBASIC2.49□□□□□ -2.01
ZNF540Q8NDQ6 AC072039.2-201ENST00000608883 439 ntBASIC2.49□□□□□ -2.01
ZNF540Q8NDQ6 AC093783.1-201ENST00000612976 329 ntBASIC2.49□□□□□ -2.01
ZNF540Q8NDQ6 MIR6895-201ENST00000613497 78 ntBASIC2.49□□□□□ -2.01
ZNF540Q8NDQ6 AC092142.2-201ENST00000614642 354 ntTSL 3 BASIC2.49□□□□□ -2.01
ZNF540Q8NDQ6 AC244093.3-201ENST00000615419 411 ntTSL 3 BASIC2.49□□□□□ -2.01
ZNF540Q8NDQ6 MYCBP2-AS1-209ENST00000631152 412 ntTSL 5 BASIC2.49□□□□□ -2.01
ZNF540Q8NDQ6 RTL4-201ENST00000340433 2613 ntAPPRIS P1 BASIC2.49□□□□□ -2.01
ZNF540Q8NDQ6 FGF7-201ENST00000267843 5467 ntAPPRIS P1 TSL 1 (best) BASIC2.48□□□□□ -2.01
ZNF540Q8NDQ6 AMY2B-208ENST00000610648 1736 ntAPPRIS P1 TSL 1 (best) BASIC2.48□□□□□ -2.01
ZNF540Q8NDQ6 NACAP2-201ENST00000318548 624 ntBASIC2.48□□□□□ -2.01
ZNF540Q8NDQ6 MIR6073-201ENST00000352083 89 ntBASIC2.48□□□□□ -2.01
ZNF540Q8NDQ6 AL049545.1-201ENST00000401856 572 ntBASIC2.48□□□□□ -2.01
ZNF540Q8NDQ6 RNA5SP181-201ENST00000410246 98 ntBASIC2.48□□□□□ -2.01
ZNF540Q8NDQ6 RN7SKP158-201ENST00000410453 326 ntBASIC2.48□□□□□ -2.01
ZNF540Q8NDQ6 AC093382.1-201ENST00000413311 379 ntTSL 5 BASIC2.48□□□□□ -2.01
ZNF540Q8NDQ6 AL158840.1-201ENST00000414132 523 ntTSL 3 BASIC2.48□□□□□ -2.01
ZNF540Q8NDQ6 LINC02331-201ENST00000418927 602 ntTSL 5 BASIC2.48□□□□□ -2.01
ZNF540Q8NDQ6 AL593851.1-201ENST00000426171 157 ntBASIC2.48□□□□□ -2.01
ZNF540Q8NDQ6 RPS6P15-201ENST00000431996 751 ntBASIC2.48□□□□□ -2.01
ZNF540Q8NDQ6 AC097662.1-205ENST00000433324 241 ntTSL 5 BASIC2.48□□□□□ -2.01
ZNF540Q8NDQ6 AC069540.2-201ENST00000441776 351 ntTSL 3 BASIC2.48□□□□□ -2.01
ZNF540Q8NDQ6 CHODL-AS1-201ENST00000447175 1117 ntTSL 2 BASIC2.48□□□□□ -2.01
ZNF540Q8NDQ6 AL158210.1-201ENST00000448835 500 ntTSL 3 BASIC2.48□□□□□ -2.01
ZNF540Q8NDQ6 TEX41-209ENST00000451478 452 ntTSL 2 BASIC2.48□□□□□ -2.01
ZNF540Q8NDQ6 TSPY5P-202ENST00000456541 142 ntTSL 3 BASIC2.48□□□□□ -2.01
ZNF540Q8NDQ6 DYNLL1P5-201ENST00000467158 270 ntBASIC2.48□□□□□ -2.01
ZNF540Q8NDQ6 RPS3AP22-201ENST00000488297 769 ntBASIC2.48□□□□□ -2.01
ZNF540Q8NDQ6 AHI1-208ENST00000488690 712 ntTSL 5 BASIC2.48□□□□□ -2.01
ZNF540Q8NDQ6 AC074131.1-201ENST00000514662 253 ntTSL 2 BASIC2.48□□□□□ -2.01
ZNF540Q8NDQ6 AC106895.1-201ENST00000515825 548 ntTSL 4 BASIC2.48□□□□□ -2.01
ZNF540Q8NDQ6 AC105185.1-201ENST00000518705 535 ntBASIC2.48□□□□□ -2.01
ZNF540Q8NDQ6 AC021242.2-203ENST00000521842 687 ntTSL 3 BASIC2.48□□□□□ -2.01
ZNF540Q8NDQ6 AC093012.1-203ENST00000548437 450 ntTSL 2 BASIC2.48□□□□□ -2.01
ZNF540Q8NDQ6 AC010196.1-201ENST00000550014 450 ntTSL 5 BASIC2.48□□□□□ -2.01
ZNF540Q8NDQ6 AL121821.2-201ENST00000556081 394 ntBASIC2.48□□□□□ -2.01
ZNF540Q8NDQ6 GTF3AP2-201ENST00000557014 266 ntBASIC2.48□□□□□ -2.01
ZNF540Q8NDQ6 AL138976.2-201ENST00000563989 694 ntBASIC2.48□□□□□ -2.01
ZNF540Q8NDQ6 FOPNL-205ENST00000573429 646 ntTSL 3 BASIC2.48□□□□□ -2.01
ZNF540Q8NDQ6 RPS3AP23-202ENST00000574601 686 ntBASIC2.48□□□□□ -2.01
ZNF540Q8NDQ6 AC087749.2-201ENST00000583910 352 ntTSL 5 BASIC2.48□□□□□ -2.01
ZNF540Q8NDQ6 TTN-AS1-213ENST00000584485 838 ntTSL 3 BASIC2.48□□□□□ -2.01
ZNF540Q8NDQ6 AC011477.3-201ENST00000585571 403 ntTSL 5 BASIC2.48□□□□□ -2.01
ZNF540Q8NDQ6 AC005261.5-201ENST00000596280 355 ntBASIC2.48□□□□□ -2.01
ZNF540Q8NDQ6 AL158042.1-201ENST00000605338 460 ntBASIC2.48□□□□□ -2.01
ZNF540Q8NDQ6 AC107214.2-201ENST00000608204 634 ntBASIC2.48□□□□□ -2.01
ZNF540Q8NDQ6 AC022017.1-201ENST00000608793 559 ntTSL 4 BASIC2.48□□□□□ -2.01
ZNF540Q8NDQ6 AC097478.2-201ENST00000610572 514 ntBASIC2.48□□□□□ -2.01
ZNF540Q8NDQ6 ZNF451-208ENST00000491832 3632 ntAPPRIS ALT2 TSL 1 (best) BASIC2.48□□□□□ -2.01
ZNF540Q8NDQ6 LINC00836-202ENST00000626230 1640 ntTSL 2 BASIC2.48□□□□□ -2.01
ZNF540Q8NDQ6 LINC02510-201ENST00000509798 1576 ntTSL 1 (best) BASIC2.48□□□□□ -2.01
ZNF540Q8NDQ6 ZNF117-203ENST00000610793 1374 ntTSL 2 BASIC2.48□□□□□ -2.01
ZNF540Q8NDQ6 EIF2AK2-204ENST00000405334 1533 ntTSL 1 (best) BASIC2.47□□□□□ -2.01
ZNF540Q8NDQ6 Y_RNA.169-201ENST00000363745 96 ntBASIC2.47□□□□□ -2.01
ZNF540Q8NDQ6 RNA5SP125-201ENST00000364843 120 ntBASIC2.47□□□□□ -2.01
ZNF540Q8NDQ6 C20orf187-201ENST00000378252 446 ntTSL 2 BASIC2.47□□□□□ -2.01
ZNF540Q8NDQ6 SNORD116-8-201ENST00000384365 95 ntBASIC2.47□□□□□ -2.01
ZNF540Q8NDQ6 RNU6-748P-201ENST00000384648 107 ntBASIC2.47□□□□□ -2.01
ZNF540Q8NDQ6 TRAJ26-201ENST00000390511 60 ntAPPRIS P1 BASIC2.47□□□□□ -2.01
ZNF540Q8NDQ6 RNU2-63P-201ENST00000410792 194 ntBASIC2.47□□□□□ -2.01
ZNF540Q8NDQ6 AL161935.1-201ENST00000420945 421 ntTSL 3 BASIC2.47□□□□□ -2.01
ZNF540Q8NDQ6 TXNL1P1-201ENST00000429528 554 ntBASIC2.47□□□□□ -2.01
ZNF540Q8NDQ6 AL139132.1-201ENST00000431587 344 ntBASIC2.47□□□□□ -2.01
ZNF540Q8NDQ6 AC105272.1-201ENST00000438604 198 ntBASIC2.47□□□□□ -2.01
ZNF540Q8NDQ6 MTND3P1-201ENST00000441336 220 ntBASIC2.47□□□□□ -2.01
ZNF540Q8NDQ6 MTATP6P30-201ENST00000443540 664 ntBASIC2.47□□□□□ -2.01
ZNF540Q8NDQ6 LINC01766-201ENST00000453968 362 ntTSL 3 BASIC2.47□□□□□ -2.01
ZNF540Q8NDQ6 ANKRD7-204ENST00000477532 744 ntTSL 5 BASIC2.47□□□□□ -2.01
ZNF540Q8NDQ6 AC072039.1-201ENST00000477611 581 ntBASIC2.47□□□□□ -2.01
ZNF540Q8NDQ6 AC026780.2-201ENST00000503489 730 ntTSL 5 BASIC2.47□□□□□ -2.01
ZNF540Q8NDQ6 SNORA31.3-201ENST00000516029 96 ntBASIC2.47□□□□□ -2.01
ZNF540Q8NDQ6 RNU6-143P-201ENST00000516942 93 ntBASIC2.47□□□□□ -2.01
ZNF540Q8NDQ6 IGLV3-17-201ENST00000519099 244 ntBASIC2.47□□□□□ -2.01
ZNF540Q8NDQ6 AC087276.1-201ENST00000529659 480 ntBASIC2.47□□□□□ -2.01
ZNF540Q8NDQ6 RGS4-209ENST00000531057 544 ntTSL 4 BASIC2.47□□□□□ -2.01
ZNF540Q8NDQ6 AC007834.2-201ENST00000536310 343 ntBASIC2.47□□□□□ -2.01
ZNF540Q8NDQ6 EMP1-206ENST00000537612 505 ntTSL 3 BASIC2.47□□□□□ -2.01
ZNF540Q8NDQ6 OSBPL9P5-201ENST00000542581 171 ntBASIC2.47□□□□□ -2.01
ZNF540Q8NDQ6 AC010183.2-202ENST00000546791 382 ntTSL 3 BASIC2.47□□□□□ -2.01
ZNF540Q8NDQ6 AC079584.2-201ENST00000548756 515 ntTSL 3 BASIC2.47□□□□□ -2.01
ZNF540Q8NDQ6 AC078899.2-201ENST00000595282 212 ntBASIC2.47□□□□□ -2.01
ZNF540Q8NDQ6 AC008277.2-201ENST00000605196 797 ntBASIC2.47□□□□□ -2.01
ZNF540Q8NDQ6 AC011890.2-201ENST00000613393 294 ntBASIC2.47□□□□□ -2.01
ZNF540Q8NDQ6 AC091304.6-201ENST00000619761 202 ntBASIC2.47□□□□□ -2.01
ZNF540Q8NDQ6 AC131159.1-201ENST00000621854 213 ntBASIC2.47□□□□□ -2.01
ZNF540Q8NDQ6 AC007490.1-201ENST00000624321 703 ntBASIC2.47□□□□□ -2.01
ZNF540Q8NDQ6 AC103706.2-201ENST00000638080 240 ntBASIC2.47□□□□□ -2.01
ZNF540Q8NDQ6 PRKACB-204ENST00000370685 4481 ntAPPRIS P4 TSL 1 (best) BASIC2.47□□□□□ -2.01
ZNF540Q8NDQ6 ACTR6-212ENST00000552376 1659 ntTSL 5 BASIC2.47□□□□□ -2.01
ZNF540Q8NDQ6 AC092125.1-201ENST00000562568 1995 ntBASIC2.47□□□□□ -2.01
ZNF540Q8NDQ6 LRRC6-212ENST00000618342 1754 ntAPPRIS ALT1 TSL 5 BASIC2.46□□□□□ -2.02
ZNF540Q8NDQ6 RNU5A-8P-201ENST00000364102 114 ntBASIC2.46□□□□□ -2.02
ZNF540Q8NDQ6 SNORA3A-201ENST00000364113 130 ntBASIC2.46□□□□□ -2.02
ZNF540Q8NDQ6 RNU4-40P-201ENST00000364351 143 ntBASIC2.46□□□□□ -2.02
ZNF540Q8NDQ6 RNU6-512P-201ENST00000364438 103 ntBASIC2.46□□□□□ -2.02
ZNF540Q8NDQ6 RNA5SP210-201ENST00000391034 120 ntBASIC2.46□□□□□ -2.02
ZNF540Q8NDQ6 CASP3-203ENST00000393588 677 ntTSL 4 BASIC2.46□□□□□ -2.02
ZNF540Q8NDQ6 RNA5SP184-201ENST00000411071 108 ntBASIC2.46□□□□□ -2.02
Retrieved 100 of 98,524 protein–RNA pairs in 148 ms