Protein–RNA interactions for Protein: Q00056

HOXA4, Homeobox protein Hox-A4, humanhuman

Predicted RBP Predictions only

Length 320 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXA4Q00056 AC012100.2-201ENST00000558317 304 ntTSL 5 BASIC3.35□□□□□ -1.87
HOXA4Q00056 AC120057.2-201ENST00000571520 271 ntBASIC3.35□□□□□ -1.87
HOXA4Q00056 AC004147.1-201ENST00000580658 299 ntTSL 3 BASIC3.35□□□□□ -1.87
HOXA4Q00056 GALP-203ENST00000590002 150 ntTSL 1 (best) BASIC3.35□□□□□ -1.87
HOXA4Q00056 AC005255.1-201ENST00000593748 216 ntBASIC3.35□□□□□ -1.87
HOXA4Q00056 AC008737.2-201ENST00000599446 118 ntBASIC3.35□□□□□ -1.87
HOXA4Q00056 ELOCP5-201ENST00000604924 333 ntBASIC3.35□□□□□ -1.87
HOXA4Q00056 AC018462.2-201ENST00000605375 395 ntBASIC3.35□□□□□ -1.87
HOXA4Q00056 AC090132.2-201ENST00000615881 347 ntBASIC3.35□□□□□ -1.87
HOXA4Q00056 PISRT1.1-201ENST00000616930 107 ntBASIC3.35□□□□□ -1.87
HOXA4Q00056 ANKRD26P2-201ENST00000445530 1710 ntBASIC3.35□□□□□ -1.87
HOXA4Q00056 MFSD8-236ENST00000641509 4050 ntBASIC3.35□□□□□ -1.87
HOXA4Q00056 EMSY-210ENST00000529032 6848 ntAPPRIS P3 TSL 1 (best) BASIC3.35□□□□□ -1.87
HOXA4Q00056 LGI1-210ENST00000629035 2251 ntTSL 5 BASIC3.35□□□□□ -1.87
HOXA4Q00056 AGTR2-201ENST00000371906 2882 ntAPPRIS P1 TSL 1 (best) BASIC3.34□□□□□ -1.87
HOXA4Q00056 FAP-214ENST00000627638 2569 ntAPPRIS ALT1 TSL 5 BASIC3.34□□□□□ -1.87
HOXA4Q00056 PLEKHG7-203ENST00000638590 3267 ntAPPRIS P1 TSL 2 BASIC3.34□□□□□ -1.87
HOXA4Q00056 KANSL1L-209ENST00000457374 2264 ntTSL 2 BASIC3.34□□□□□ -1.87
HOXA4Q00056 SNORD62.1-201ENST00000362541 86 ntBASIC3.34□□□□□ -1.87
HOXA4Q00056 SNORD3E-201ENST00000362899 217 ntBASIC3.34□□□□□ -1.87
HOXA4Q00056 RHOT1P2-201ENST00000366423 333 ntBASIC3.34□□□□□ -1.87
HOXA4Q00056 RNU6-890P-201ENST00000384121 107 ntBASIC3.34□□□□□ -1.87
HOXA4Q00056 MIR301A-201ENST00000385261 86 ntBASIC3.34□□□□□ -1.87
HOXA4Q00056 SNORD73A-201ENST00000386062 65 ntBASIC3.34□□□□□ -1.87
HOXA4Q00056 Z85995.1-201ENST00000415547 335 ntBASIC3.34□□□□□ -1.87
HOXA4Q00056 AC092941.1-201ENST00000415940 427 ntTSL 5 BASIC3.34□□□□□ -1.87
HOXA4Q00056 EI24P1-201ENST00000416584 867 ntBASIC3.34□□□□□ -1.87
HOXA4Q00056 NDUFB4P7-201ENST00000423198 363 ntBASIC3.34□□□□□ -1.87
HOXA4Q00056 USP9YP30-201ENST00000430729 455 ntBASIC3.34□□□□□ -1.87
HOXA4Q00056 AC236972.1-201ENST00000433225 199 ntBASIC3.34□□□□□ -1.87
HOXA4Q00056 AL157937.1-201ENST00000435092 443 ntTSL 3 BASIC3.34□□□□□ -1.87
HOXA4Q00056 AC078993.1-203ENST00000435789 1037 ntTSL 5 BASIC3.34□□□□□ -1.87
HOXA4Q00056 AL357873.1-201ENST00000449215 282 ntTSL 3 BASIC3.34□□□□□ -1.87
HOXA4Q00056 AC025918.1-201ENST00000452467 383 ntTSL 3 BASIC3.34□□□□□ -1.87
HOXA4Q00056 HMGB3P30-201ENST00000457863 606 ntBASIC3.34□□□□□ -1.87
HOXA4Q00056 RNU7-187P-201ENST00000458985 68 ntBASIC3.34□□□□□ -1.87
HOXA4Q00056 RNU7-138P-201ENST00000459479 64 ntBASIC3.34□□□□□ -1.87
HOXA4Q00056 CREM-230ENST00000474931 626 ntTSL 2 BASIC3.34□□□□□ -1.87
HOXA4Q00056 AP000926.1-201ENST00000479573 241 ntBASIC3.34□□□□□ -1.87
HOXA4Q00056 PPIAP15-201ENST00000479662 484 ntBASIC3.34□□□□□ -1.87
HOXA4Q00056 AC008716.1-201ENST00000511084 513 ntBASIC3.34□□□□□ -1.87
HOXA4Q00056 SNORA70.16-201ENST00000516390 95 ntBASIC3.34□□□□□ -1.87
HOXA4Q00056 Y_RNA.708-201ENST00000516950 96 ntBASIC3.34□□□□□ -1.87
HOXA4Q00056 RNU6-1315P-201ENST00000517187 99 ntBASIC3.34□□□□□ -1.87
HOXA4Q00056 THEM7P-202ENST00000525689 764 ntTSL 3 BASIC3.34□□□□□ -1.87
HOXA4Q00056 AC113192.5-201ENST00000528779 486 ntTSL 2 BASIC3.34□□□□□ -1.87
HOXA4Q00056 UTS2-201ENST00000054668 420 ntAPPRIS P4 TSL 1 (best) BASIC3.34□□□□□ -1.87
HOXA4Q00056 AC127894.1-201ENST00000548266 851 ntTSL 3 BASIC3.34□□□□□ -1.87
HOXA4Q00056 AC069240.1-201ENST00000548774 375 ntBASIC3.34□□□□□ -1.87
HOXA4Q00056 TRAV37-201ENST00000553906 342 ntBASIC3.34□□□□□ -1.87
HOXA4Q00056 MIR3160-1-201ENST00000577972 85 ntBASIC3.34□□□□□ -1.87
HOXA4Q00056 AC007948.1-201ENST00000581632 242 ntTSL 5 BASIC3.34□□□□□ -1.87
HOXA4Q00056 LINC02079-201ENST00000582518 294 ntTSL 2 BASIC3.34□□□□□ -1.87
HOXA4Q00056 LINC02112-205ENST00000606744 236 ntTSL 1 (best) BASIC3.34□□□□□ -1.87
HOXA4Q00056 AC107294.1-201ENST00000609524 467 ntBASIC3.34□□□□□ -1.87
HOXA4Q00056 AL589935.1-202ENST00000612512 393 ntTSL 5 BASIC3.34□□□□□ -1.87
HOXA4Q00056 AL732372.2-225ENST00000642124 456 ntBASIC3.34□□□□□ -1.87
HOXA4Q00056 CCDC121-201ENST00000324364 2342 ntAPPRIS P3 TSL 1 (best) BASIC3.34□□□□□ -1.87
HOXA4Q00056 ADGRG2-201ENST00000340581 3594 ntTSL 2 BASIC3.34□□□□□ -1.88
HOXA4Q00056 TAOK3-202ENST00000419821 4301 ntAPPRIS P1 TSL 1 (best) BASIC3.34□□□□□ -1.88
HOXA4Q00056 KCNJ16-201ENST00000283936 4062 ntAPPRIS P1 TSL 1 (best) BASIC3.34□□□□□ -1.88
HOXA4Q00056 MS4A14-203ENST00000395005 2813 ntTSL 1 (best) BASIC3.34□□□□□ -1.88
HOXA4Q00056 U2SURP-214ENST00000493598 3491 ntTSL 5 BASIC3.34□□□□□ -1.88
HOXA4Q00056 ZNF345-214ENST00000612719 2938 ntAPPRIS P1 TSL 4 BASIC3.33□□□□□ -1.88
HOXA4Q00056 LINC01416-201ENST00000563553 2310 ntTSL 1 (best) BASIC3.33□□□□□ -1.88
HOXA4Q00056 FGF7-202ENST00000560270 1688 ntTSL 1 (best) BASIC3.33□□□□□ -1.88
HOXA4Q00056 AC005550.3-201ENST00000451240 3743 ntTSL 1 (best) BASIC3.33□□□□□ -1.88
HOXA4Q00056 FAM169A-201ENST00000389156 5990 ntAPPRIS P1 TSL 1 (best) BASIC3.33□□□□□ -1.88
HOXA4Q00056 DMXL1-201ENST00000311085 11072 ntAPPRIS P1 TSL 1 (best) BASIC3.33□□□□□ -1.88
HOXA4Q00056 AL049641.1-201ENST00000441055 1948 ntBASIC3.33□□□□□ -1.88
HOXA4Q00056 MFN1-201ENST00000263969 2754 ntAPPRIS P1 TSL 1 (best) BASIC3.33□□□□□ -1.88
HOXA4Q00056 Y_RNA.112-201ENST00000363250 102 ntBASIC3.33□□□□□ -1.88
HOXA4Q00056 RNU6-1059P-201ENST00000363752 98 ntBASIC3.33□□□□□ -1.88
HOXA4Q00056 SNORD74.4-201ENST00000364129 80 ntBASIC3.33□□□□□ -1.88
HOXA4Q00056 Y_RNA.324-201ENST00000365165 102 ntBASIC3.33□□□□□ -1.88
HOXA4Q00056 RNU6-1329P-201ENST00000365664 107 ntBASIC3.33□□□□□ -1.88
HOXA4Q00056 RNU6-331P-201ENST00000384724 107 ntBASIC3.33□□□□□ -1.88
HOXA4Q00056 MIR93-201ENST00000385024 80 ntBASIC3.33□□□□□ -1.88
HOXA4Q00056 RNU6-328P-201ENST00000390887 106 ntBASIC3.33□□□□□ -1.88
HOXA4Q00056 LINC00279-201ENST00000413486 473 ntTSL 3 BASIC3.33□□□□□ -1.88
HOXA4Q00056 Z99755.1-201ENST00000414048 380 ntBASIC3.33□□□□□ -1.88
HOXA4Q00056 AC113618.1-201ENST00000416747 285 ntBASIC3.33□□□□□ -1.88
HOXA4Q00056 RPL27AP8-201ENST00000424277 446 ntBASIC3.33□□□□□ -1.88
HOXA4Q00056 UBE2D3P2-201ENST00000424409 445 ntBASIC3.33□□□□□ -1.88
HOXA4Q00056 HCG2040054-201ENST00000435331 434 ntTSL 3 BASIC3.33□□□□□ -1.88
HOXA4Q00056 AL390067.1-201ENST00000440009 420 ntTSL 3 BASIC3.33□□□□□ -1.88
HOXA4Q00056 AL441989.1-201ENST00000454204 382 ntTSL 3 BASIC3.33□□□□□ -1.88
HOXA4Q00056 AC022445.1-201ENST00000457499 408 ntTSL 3 BASIC3.33□□□□□ -1.88
HOXA4Q00056 AC078817.1-201ENST00000492623 435 ntBASIC3.33□□□□□ -1.88
HOXA4Q00056 RNU6-120P-201ENST00000516077 103 ntBASIC3.33□□□□□ -1.88
HOXA4Q00056 RNU6-1137P-201ENST00000517073 99 ntBASIC3.33□□□□□ -1.88
HOXA4Q00056 UTP23-205ENST00000520733 369 ntTSL 3 BASIC3.33□□□□□ -1.88
HOXA4Q00056 AC104576.1-201ENST00000524225 88 ntBASIC3.33□□□□□ -1.88
HOXA4Q00056 YPEL5P3-201ENST00000547227 352 ntBASIC3.33□□□□□ -1.88
HOXA4Q00056 PCED1B-AS1-208ENST00000551898 359 ntTSL 3 BASIC3.33□□□□□ -1.88
HOXA4Q00056 AL359237.1-201ENST00000554305 826 ntTSL 5 BASIC3.33□□□□□ -1.88
HOXA4Q00056 AC104002.1-201ENST00000557025 380 ntTSL 3 BASIC3.33□□□□□ -1.88
HOXA4Q00056 MIR3921-201ENST00000577308 85 ntBASIC3.33□□□□□ -1.88
HOXA4Q00056 LRRC37A5P-203ENST00000580181 585 ntBASIC3.33□□□□□ -1.88
HOXA4Q00056 LINC01897-203ENST00000591503 369 ntTSL 2 BASIC3.33□□□□□ -1.88
Retrieved 100 of 98,524 protein–RNA pairs in 11.6 ms