Protein–RNA interactions for Protein: P43378

PTPN9, Tyrosine-protein phosphatase non-receptor type 9, humanhuman

Predictions only

Length 593 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN9P43378 MIR4703-201ENST00000577728 79 ntBASIC3.36□□□□□ -1.87
PTPN9P43378 AC104564.2-201ENST00000581240 270 ntTSL 3 BASIC3.36□□□□□ -1.87
PTPN9P43378 MIR3944-201ENST00000581277 108 ntBASIC3.36□□□□□ -1.87
PTPN9P43378 AC008752.3-201ENST00000588113 712 ntBASIC3.36□□□□□ -1.87
PTPN9P43378 LINC01928-201ENST00000591029 504 ntTSL 3 BASIC3.36□□□□□ -1.87
PTPN9P43378 AC012313.1-202ENST00000597309 423 ntTSL 3 BASIC3.36□□□□□ -1.87
PTPN9P43378 RASSF8-215ENST00000611440 852 ntTSL 5 BASIC3.36□□□□□ -1.87
PTPN9P43378 MTND1P37-201ENST00000636562 264 ntBASIC3.36□□□□□ -1.87
PTPN9P43378 AC022336.2-201ENST00000568966 2538 ntBASIC3.36□□□□□ -1.87
PTPN9P43378 NXPE1-204ENST00000536271 2289 ntTSL 1 (best) BASIC3.36□□□□□ -1.87
PTPN9P43378 PRKACB-201ENST00000370680 1914 ntTSL 1 (best) BASIC3.35□□□□□ -1.87
PTPN9P43378 MYOT-208ENST00000515645 1578 ntTSL 2 BASIC3.35□□□□□ -1.87
PTPN9P43378 SLC8A1-207ENST00000406785 20987 ntTSL 1 (best) BASIC3.35□□□□□ -1.87
PTPN9P43378 RPL7P26-201ENST00000333817 754 ntBASIC3.35□□□□□ -1.87
PTPN9P43378 Y_RNA.89-201ENST00000363031 102 ntBASIC3.35□□□□□ -1.87
PTPN9P43378 RNA5SP267-201ENST00000364893 126 ntBASIC3.35□□□□□ -1.87
PTPN9P43378 RNU6-1029P-201ENST00000384109 107 ntBASIC3.35□□□□□ -1.87
PTPN9P43378 AL591034.1-201ENST00000407447 340 ntBASIC3.35□□□□□ -1.87
PTPN9P43378 AC079150.1-201ENST00000413043 383 ntTSL 3 BASIC3.35□□□□□ -1.87
PTPN9P43378 AC245291.1-201ENST00000419501 328 ntBASIC3.35□□□□□ -1.87
PTPN9P43378 AL353705.1-201ENST00000433468 480 ntBASIC3.35□□□□□ -1.87
PTPN9P43378 RBMX2P4-201ENST00000441256 376 ntBASIC3.35□□□□□ -1.87
PTPN9P43378 Z75741.1-201ENST00000446793 314 ntBASIC3.35□□□□□ -1.87
PTPN9P43378 DPPA3P1-201ENST00000448050 469 ntBASIC3.35□□□□□ -1.87
PTPN9P43378 MTND1P18-201ENST00000448191 573 ntBASIC3.35□□□□□ -1.87
PTPN9P43378 AC073415.1-201ENST00000449240 153 ntBASIC3.35□□□□□ -1.87
PTPN9P43378 ZEB1-AS1-204ENST00000450834 576 ntTSL 3 BASIC3.35□□□□□ -1.87
PTPN9P43378 CACYBPP2-201ENST00000453625 678 ntBASIC3.35□□□□□ -1.87
PTPN9P43378 RPS27P29-201ENST00000463110 252 ntBASIC3.35□□□□□ -1.87
PTPN9P43378 RPL39P36-201ENST00000490784 156 ntBASIC3.35□□□□□ -1.87
PTPN9P43378 AL160314.1-201ENST00000490836 438 ntBASIC3.35□□□□□ -1.87
PTPN9P43378 AC106744.2-202ENST00000515123 448 ntTSL 3 BASIC3.35□□□□□ -1.87
PTPN9P43378 SNORA64.4-201ENST00000516632 81 ntBASIC3.35□□□□□ -1.87
PTPN9P43378 AC136777.1-201ENST00000517765 369 ntTSL 4 BASIC3.35□□□□□ -1.87
PTPN9P43378 AP005435.4-201ENST00000529514 284 ntBASIC3.35□□□□□ -1.87
PTPN9P43378 RANP3-201ENST00000530970 276 ntBASIC3.35□□□□□ -1.87
PTPN9P43378 AC078778.1-201ENST00000547177 735 ntTSL 3 BASIC3.35□□□□□ -1.87
PTPN9P43378 ADI1P3-201ENST00000549509 470 ntBASIC3.35□□□□□ -1.87
PTPN9P43378 AC113137.1-201ENST00000591869 558 ntTSL 4 BASIC3.35□□□□□ -1.87
PTPN9P43378 BNIP3P30-201ENST00000601184 574 ntBASIC3.35□□□□□ -1.87
PTPN9P43378 AC008945.2-201ENST00000606056 604 ntBASIC3.35□□□□□ -1.87
PTPN9P43378 uc_338.25-201ENST00000613756 156 ntBASIC3.35□□□□□ -1.87
PTPN9P43378 AL354950.2-201ENST00000617939 290 ntBASIC3.35□□□□□ -1.87
PTPN9P43378 AC091903.1-201ENST00000624322 454 ntBASIC3.35□□□□□ -1.87
PTPN9P43378 ZNF807-201ENST00000328088 1707 ntBASIC3.35□□□□□ -1.87
PTPN9P43378 MTND5P27-201ENST00000428871 1720 ntBASIC3.35□□□□□ -1.87
PTPN9P43378 POLK-217ENST00000515295 1438 ntTSL 1 (best) BASIC3.35□□□□□ -1.87
PTPN9P43378 AC007785.2-201ENST00000598627 1916 ntBASIC3.34□□□□□ -1.87
PTPN9P43378 PRKACB-219ENST00000614872 4306 ntTSL 1 (best) BASIC3.34□□□□□ -1.87
PTPN9P43378 CRISP3-204ENST00000433368 2205 ntAPPRIS ALT2 TSL 5 BASIC3.34□□□□□ -1.87
PTPN9P43378 KRTAP15-1-201ENST00000334067 671 ntAPPRIS P1 BASIC3.34□□□□□ -1.87
PTPN9P43378 RNA5SP383-201ENST00000362934 120 ntBASIC3.34□□□□□ -1.87
PTPN9P43378 RNU6-1167P-201ENST00000363227 94 ntBASIC3.34□□□□□ -1.87
PTPN9P43378 RNY3P3-201ENST00000363816 102 ntBASIC3.34□□□□□ -1.87
PTPN9P43378 RNU6-1090P-201ENST00000364065 94 ntBASIC3.34□□□□□ -1.87
PTPN9P43378 RNU6-534P-201ENST00000364877 106 ntBASIC3.34□□□□□ -1.87
PTPN9P43378 Y_RNA.576-201ENST00000384781 102 ntBASIC3.34□□□□□ -1.87
PTPN9P43378 AL139397.2-201ENST00000404529 772 ntBASIC3.34□□□□□ -1.87
PTPN9P43378 RNA5SP44-201ENST00000410446 133 ntBASIC3.34□□□□□ -1.87
PTPN9P43378 RNU4-46P-201ENST00000410818 138 ntBASIC3.34□□□□□ -1.87
PTPN9P43378 RPS12P24-201ENST00000412619 387 ntBASIC3.34□□□□□ -1.87
PTPN9P43378 AC012498.1-201ENST00000424037 437 ntBASIC3.34□□□□□ -1.87
PTPN9P43378 UBE2D3P2-201ENST00000424409 445 ntBASIC3.34□□□□□ -1.87
PTPN9P43378 AL451062.2-201ENST00000427515 271 ntBASIC3.34□□□□□ -1.87
PTPN9P43378 RPL23AP69-201ENST00000431134 458 ntBASIC3.34□□□□□ -1.87
PTPN9P43378 LINC00844-201ENST00000432535 477 ntTSL 2 BASIC3.34□□□□□ -1.87
PTPN9P43378 AL138900.2-201ENST00000434098 156 ntTSL 3 BASIC3.34□□□□□ -1.87
PTPN9P43378 AC004888.1-201ENST00000450480 547 ntTSL 2 BASIC3.34□□□□□ -1.87
PTPN9P43378 RPS29P15-201ENST00000458329 171 ntBASIC3.34□□□□□ -1.87
PTPN9P43378 RPL37P6-201ENST00000460682 294 ntBASIC3.34□□□□□ -1.87
PTPN9P43378 AC006512.1-201ENST00000468816 291 ntBASIC3.34□□□□□ -1.87
PTPN9P43378 RN7SL601P-201ENST00000471221 293 ntBASIC3.34□□□□□ -1.87
PTPN9P43378 AC233702.1-201ENST00000482905 502 ntBASIC3.34□□□□□ -1.87
PTPN9P43378 RPL32P34-201ENST00000486380 400 ntBASIC3.34□□□□□ -1.87
PTPN9P43378 AC117522.3-201ENST00000507974 584 ntBASIC3.34□□□□□ -1.87
PTPN9P43378 AC113385.1-201ENST00000511468 563 ntTSL 4 BASIC3.34□□□□□ -1.87
PTPN9P43378 RNU6-1282P-201ENST00000516735 96 ntBASIC3.34□□□□□ -1.87
PTPN9P43378 AC009435.1-201ENST00000519555 574 ntTSL 4 BASIC3.34□□□□□ -1.87
PTPN9P43378 LINC02546-202ENST00000528119 801 ntTSL 5 BASIC3.34□□□□□ -1.87
PTPN9P43378 AC010185.1-201ENST00000542489 456 ntTSL 3 BASIC3.34□□□□□ -1.87
PTPN9P43378 LINC02350-201ENST00000544419 480 ntTSL 3 BASIC3.34□□□□□ -1.87
PTPN9P43378 CR383656.11-201ENST00000552261 498 ntTSL 3 BASIC3.34□□□□□ -1.87
PTPN9P43378 AL352955.1-201ENST00000555490 332 ntTSL 3 BASIC3.34□□□□□ -1.87
PTPN9P43378 AC026470.3-201ENST00000563994 438 ntTSL 3 BASIC3.34□□□□□ -1.87
PTPN9P43378 AC034105.3-201ENST00000565294 442 ntBASIC3.34□□□□□ -1.87
PTPN9P43378 AC008521.1-201ENST00000587471 187 ntBASIC3.34□□□□□ -1.87
PTPN9P43378 AC024220.1-201ENST00000603675 484 ntBASIC3.34□□□□□ -1.87
PTPN9P43378 AL390240.1-201ENST00000612950 384 ntBASIC3.34□□□□□ -1.87
PTPN9P43378 AC002553.4-201ENST00000616896 331 ntBASIC3.34□□□□□ -1.87
PTPN9P43378 AF117829.1-206ENST00000621883 3802 ntBASIC3.34□□□□□ -1.87
PTPN9P43378 YWHAEP7-203ENST00000622054 312 ntBASIC3.34□□□□□ -1.87
PTPN9P43378 AC007218.2-201ENST00000636913 179 ntTSL 5 BASIC3.34□□□□□ -1.87
PTPN9P43378 EFCAB5-213ENST00000638539 168 ntTSL 5 BASIC3.34□□□□□ -1.87
PTPN9P43378 FILIP1L-206ENST00000471562 2854 ntTSL 1 (best) BASIC3.34□□□□□ -1.87
PTPN9P43378 SLC9C1-205ENST00000487372 3979 ntAPPRIS ALT2 TSL 1 (best) BASIC3.34□□□□□ -1.87
PTPN9P43378 ZNF676-201ENST00000397121 2944 ntAPPRIS P1 TSL 2 BASIC3.34□□□□□ -1.87
PTPN9P43378 LRRC49-224ENST00000560691 2531 ntTSL 2 BASIC3.34□□□□□ -1.88
PTPN9P43378 FIGNL1-212ENST00000613602 3187 ntAPPRIS P1 TSL 5 BASIC3.34□□□□□ -1.88
PTPN9P43378 NEB-218ENST00000603639 25578 ntAPPRIS ALT2 TSL 5 BASIC3.33□□□□□ -1.88
PTPN9P43378 NEB-219ENST00000604864 25578 ntAPPRIS ALT2 TSL 5 BASIC3.33□□□□□ -1.88
Retrieved 100 of 98,524 protein–RNA pairs in 83.7 ms