Protein–RNA interactions for Protein: P12109

COL6A1, Collagen alpha-1(VI) chain, humanhuman

Predictions only

Length 1,028 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A1P12109 MIR4293-201ENST00000584305 78 ntBASIC4.37□□□□□ -1.71
COL6A1P12109 AC023043.2-201ENST00000589678 1026 ntBASIC4.37□□□□□ -1.71
COL6A1P12109 AL670379.6-201ENST00000603753 252 ntBASIC4.37□□□□□ -1.71
COL6A1P12109 AL670379.11-201ENST00000604059 253 ntBASIC4.37□□□□□ -1.71
COL6A1P12109 AC008162.1-201ENST00000604718 254 ntBASIC4.37□□□□□ -1.71
COL6A1P12109 AL670379.1-201ENST00000604752 252 ntBASIC4.37□□□□□ -1.71
COL6A1P12109 AL670379.5-201ENST00000605253 252 ntBASIC4.37□□□□□ -1.71
COL6A1P12109 AL670379.12-201ENST00000605291 253 ntBASIC4.37□□□□□ -1.71
COL6A1P12109 AL670379.8-201ENST00000605353 252 ntBASIC4.37□□□□□ -1.71
COL6A1P12109 AL670379.7-201ENST00000605823 252 ntBASIC4.37□□□□□ -1.71
COL6A1P12109 SMCR2_2.1-201ENST00000619783 161 ntBASIC4.37□□□□□ -1.71
COL6A1P12109 OR5H14-202ENST00000641380 7323 ntAPPRIS P1 BASIC4.37□□□□□ -1.71
COL6A1P12109 C1orf141-202ENST00000371006 2053 ntAPPRIS P3 TSL 2 BASIC4.37□□□□□ -1.71
COL6A1P12109 AC103710.2-202ENST00000641454 2853 ntBASIC4.37□□□□□ -1.71
COL6A1P12109 MTND5P19-201ENST00000424872 1794 ntBASIC4.37□□□□□ -1.71
COL6A1P12109 CCDC178-204ENST00000403303 3354 ntAPPRIS ALT2 TSL 1 (best) BASIC4.37□□□□□ -1.71
COL6A1P12109 CACNB4-260ENST00000637762 3800 ntTSL 5 BASIC4.37□□□□□ -1.71
COL6A1P12109 NCOA1-202ENST00000348332 6895 ntAPPRIS P4 TSL 1 (best) BASIC4.37□□□□□ -1.71
COL6A1P12109 TMEM59-205ENST00000371348 1911 ntTSL 1 (best) BASIC4.36□□□□□ -1.71
COL6A1P12109 ADGRG4-201ENST00000370652 9820 ntAPPRIS P2 TSL 5 BASIC4.36□□□□□ -1.71
COL6A1P12109 FAM126B-202ENST00000418596 9333 ntAPPRIS P1 TSL 1 (best) BASIC4.36□□□□□ -1.71
COL6A1P12109 Y_RNA.401-201ENST00000383965 117 ntBASIC4.36□□□□□ -1.71
COL6A1P12109 RNU6-601P-201ENST00000384540 107 ntBASIC4.36□□□□□ -1.71
COL6A1P12109 RNU6-550P-201ENST00000391057 101 ntBASIC4.36□□□□□ -1.71
COL6A1P12109 AL360182.1-201ENST00000397433 468 ntBASIC4.36□□□□□ -1.71
COL6A1P12109 AL139397.2-201ENST00000404529 772 ntBASIC4.36□□□□□ -1.71
COL6A1P12109 HDGFP1-201ENST00000405943 252 ntBASIC4.36□□□□□ -1.71
COL6A1P12109 RNU6-954P-201ENST00000411355 107 ntBASIC4.36□□□□□ -1.71
COL6A1P12109 RPL30P2-201ENST00000414021 291 ntBASIC4.36□□□□□ -1.71
COL6A1P12109 LINC01344-201ENST00000420760 261 ntTSL 3 BASIC4.36□□□□□ -1.71
COL6A1P12109 AL109947.1-201ENST00000423747 382 ntTSL 2 BASIC4.36□□□□□ -1.71
COL6A1P12109 EHHADH-202ENST00000440662 656 ntTSL 3 BASIC4.36□□□□□ -1.71
COL6A1P12109 MTND1P17-201ENST00000448961 204 ntBASIC4.36□□□□□ -1.71
COL6A1P12109 AC005871.1-201ENST00000450247 475 ntTSL 3 BASIC4.36□□□□□ -1.71
COL6A1P12109 CYCSP35-201ENST00000451978 304 ntBASIC4.36□□□□□ -1.71
COL6A1P12109 GAS5-223ENST00000452197 483 ntTSL 3 BASIC4.36□□□□□ -1.71
COL6A1P12109 TRBV1-201ENST00000476502 284 ntBASIC4.36□□□□□ -1.71
COL6A1P12109 RNU1-103P-201ENST00000516502 125 ntBASIC4.36□□□□□ -1.71
COL6A1P12109 AC100770.1-201ENST00000532310 322 ntBASIC4.36□□□□□ -1.71
COL6A1P12109 MIR3672-201ENST00000584290 82 ntBASIC4.36□□□□□ -1.71
COL6A1P12109 AC007952.9-201ENST00000584365 191 ntTSL 3 BASIC4.36□□□□□ -1.71
COL6A1P12109 AC003973.1-201ENST00000600071 546 ntTSL 4 BASIC4.36□□□□□ -1.71
COL6A1P12109 AL670379.10-201ENST00000604330 253 ntBASIC4.36□□□□□ -1.71
COL6A1P12109 AL670379.9-201ENST00000605428 253 ntBASIC4.36□□□□□ -1.71
COL6A1P12109 WFDC11-203ENST00000618797 561 ntAPPRIS P1 TSL 5 BASIC4.36□□□□□ -1.71
COL6A1P12109 AC103705.1-201ENST00000619013 241 ntBASIC4.36□□□□□ -1.71
COL6A1P12109 TEX41-280ENST00000629185 591 ntTSL 5 BASIC4.36□□□□□ -1.71
COL6A1P12109 U6.98-201ENST00000637157 84 ntBASIC4.36□□□□□ -1.71
COL6A1P12109 THEMIS-202ENST00000368250 4101 ntAPPRIS P3 TSL 5 BASIC4.36□□□□□ -1.71
COL6A1P12109 KYNU-201ENST00000264170 15316 ntAPPRIS P1 TSL 1 (best) BASIC4.36□□□□□ -1.71
COL6A1P12109 ZC3H7A-202ENST00000396516 3845 ntAPPRIS P1 TSL 1 (best) BASIC4.36□□□□□ -1.71
COL6A1P12109 AL158064.1-201ENST00000627044 2242 ntTSL 4 BASIC4.36□□□□□ -1.71
COL6A1P12109 ORC4-201ENST00000264169 6598 ntAPPRIS P1 TSL 5 BASIC4.35□□□□□ -1.71
COL6A1P12109 AL033397.1-201ENST00000502390 3653 ntTSL 2 BASIC4.35□□□□□ -1.71
COL6A1P12109 RNFT1-201ENST00000305783 2101 ntAPPRIS P1 TSL 1 (best) BASIC4.35□□□□□ -1.71
COL6A1P12109 OR10A7-201ENST00000326258 951 ntAPPRIS P1 BASIC4.35□□□□□ -1.71
COL6A1P12109 RNU6-593P-201ENST00000364716 112 ntBASIC4.35□□□□□ -1.71
COL6A1P12109 CISD1P1-201ENST00000393907 327 ntBASIC4.35□□□□□ -1.71
COL6A1P12109 AC096664.2-201ENST00000411843 406 ntBASIC4.35□□□□□ -1.71
COL6A1P12109 RPL21P24-201ENST00000413752 448 ntBASIC4.35□□□□□ -1.71
COL6A1P12109 ATP2B2-IT2-201ENST00000419591 507 ntTSL 2 BASIC4.35□□□□□ -1.71
COL6A1P12109 AC073311.1-201ENST00000420146 505 ntTSL 5 BASIC4.35□□□□□ -1.71
COL6A1P12109 AC097713.2-201ENST00000430199 356 ntBASIC4.35□□□□□ -1.71
COL6A1P12109 SNAP23P1-201ENST00000433229 246 ntBASIC4.35□□□□□ -1.71
COL6A1P12109 AL138900.2-201ENST00000434098 156 ntTSL 3 BASIC4.35□□□□□ -1.71
COL6A1P12109 AC018495.1-201ENST00000440266 452 ntTSL 3 BASIC4.35□□□□□ -1.71
COL6A1P12109 LINC01594-201ENST00000445083 611 ntTSL 5 BASIC4.35□□□□□ -1.71
COL6A1P12109 AC010655.1-201ENST00000449336 292 ntBASIC4.35□□□□□ -1.71
COL6A1P12109 AC234775.1-201ENST00000454247 670 ntBASIC4.35□□□□□ -1.71
COL6A1P12109 AC009468.2-201ENST00000457372 366 ntTSL 5 BASIC4.35□□□□□ -1.71
COL6A1P12109 SCARNA18-201ENST00000459004 134 ntBASIC4.35□□□□□ -1.71
COL6A1P12109 LEKR1-205ENST00000477399 621 ntTSL 2 BASIC4.35□□□□□ -1.71
COL6A1P12109 RPL7P43-201ENST00000478876 753 ntBASIC4.35□□□□□ -1.71
COL6A1P12109 AC104304.1-201ENST00000505797 291 ntAPPRIS P1 TSL 3 BASIC4.35□□□□□ -1.71
COL6A1P12109 AC111194.2-201ENST00000511222 455 ntTSL 5 BASIC4.35□□□□□ -1.71
COL6A1P12109 AC010451.3-201ENST00000511721 444 ntTSL 3 BASIC4.35□□□□□ -1.71
COL6A1P12109 PTP4A1P4-201ENST00000512479 322 ntBASIC4.35□□□□□ -1.71
COL6A1P12109 RN7SKP18-201ENST00000516005 275 ntBASIC4.35□□□□□ -1.71
COL6A1P12109 IGKV2D-23-201ENST00000518179 286 ntBASIC4.35□□□□□ -1.71
COL6A1P12109 AC087369.1-201ENST00000520775 996 ntBASIC4.35□□□□□ -1.71
COL6A1P12109 AC100870.1-201ENST00000522035 505 ntBASIC4.35□□□□□ -1.71
COL6A1P12109 LINC02459-201ENST00000551761 474 ntTSL 3 BASIC4.35□□□□□ -1.71
COL6A1P12109 MIR3668-201ENST00000582138 75 ntBASIC4.35□□□□□ -1.71
COL6A1P12109 AF038458.1-201ENST00000588406 262 ntBASIC4.35□□□□□ -1.71
COL6A1P12109 AC244505.7-201ENST00000599675 272 ntBASIC4.35□□□□□ -1.71
COL6A1P12109 AP000654.2-201ENST00000605633 586 ntBASIC4.35□□□□□ -1.71
COL6A1P12109 LINC00310-205ENST00000609062 863 ntTSL 5 BASIC4.35□□□□□ -1.71
COL6A1P12109 AL355810.1-201ENST00000614629 552 ntBASIC4.35□□□□□ -1.71
COL6A1P12109 MSANTD4-206ENST00000617528 508 ntTSL 5 BASIC4.35□□□□□ -1.71
COL6A1P12109 CCDC178-205ENST00000406524 3039 ntAPPRIS ALT2 TSL 5 BASIC4.35□□□□□ -1.71
COL6A1P12109 CLCA2-201ENST00000370565 4025 ntAPPRIS P1 TSL 1 (best) BASIC4.35□□□□□ -1.71
COL6A1P12109 LINC02232-201ENST00000509932 4079 ntTSL 1 (best) BASIC4.35□□□□□ -1.71
COL6A1P12109 OR56A1-203ENST00000641900 8448 ntAPPRIS P1 BASIC4.35□□□□□ -1.71
COL6A1P12109 GABRG2-221ENST00000639683 3600 ntTSL 5 BASIC4.35□□□□□ -1.71
COL6A1P12109 THOC2-202ENST00000355725 4930 ntAPPRIS P1 TSL 5 BASIC4.35□□□□□ -1.71
COL6A1P12109 TMEM71-202ENST00000377901 1861 ntAPPRIS ALT2 TSL 1 (best) BASIC4.35□□□□□ -1.71
COL6A1P12109 ADAMTS9-AS1-207ENST00000594810 3609 ntTSL 4 BASIC4.34□□□□□ -1.71
COL6A1P12109 SERPINA7-201ENST00000327674 2642 ntAPPRIS P1 TSL 1 (best) BASIC4.34□□□□□ -1.71
COL6A1P12109 CDH8-205ENST00000577730 8009 ntTSL 5 BASIC4.34□□□□□ -1.71
COL6A1P12109 COMMD6-201ENST00000355801 486 ntTSL 2 BASIC4.34□□□□□ -1.71
Retrieved 100 of 98,524 protein–RNA pairs in 95.7 ms